Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0006054 Sechium edule HOM05D006141 ORTHO05D007670 4.7e-101 371.3 202 100.0
ClCG01G007160 Citrullus lanatus HOM05D006141 ORTHO05D007670 7.2e-86 320.9 213 85.4
MELO3C005194.2 Cucumis melo HOM05D006141 ORTHO05D007670 5.7e-83 311.2 214 84.6
CsaV3_5G018600 Cucumis sativus L. HOM05D006141 ORTHO05D007670 8.3e-82 307.4 214 82.7
Gohir.A08G036900 Gossypium hirsutum HOM05D006141 ORTHO05D007670 2.1e-61 239.6 205 66.3
Gohir.D08G047500 Gossypium hirsutum HOM05D006141 ORTHO05D007670 2.8e-61 239.2 205 66.3
Gorai.004G046700 Gossypium raimondii HOM05D006141 ORTHO05D007670 1.4e-60 236.9 205 65.9
Cfa004908 Carpinus fangiana HOM05D006141 ORTHO05D007670 4.0e-60 235.3 213 66.2
Manes.01G234600 Manihot esculenta HOM05D006141 ORTHO05D007670 2.9e-58 229.2 211 64.9
Duzib138G1179 Durio zibethinus HOM05D006141 ORTHO05D007670 6.4e-58 228.0 209 63.6
Thecc.01G324800 Theobroma cacao HOM05D006141 ORTHO05D007670 1.4e-57 226.9 209 63.2
Atru.chr5.866 Acer truncatum HOM05D006141 ORTHO05D007670 2.4e-57 226.1 215 62.3
CiPaw.08G082900 Carya illinoinensis HOM05D006141 ORTHO05D007670 5.4e-57 224.9 210 63.3
Nn4g25355 Nelumbo nucifera HOM05D006141 ORTHO05D007670 9.2e-57 224.2 207 65.2
Ciclev10022224m.g Citrus clementina HOM05D006141 ORTHO05D007670 1.2e-56 223.8 215 62.3
Potri.014G112900 Populus trichocarpa HOM05D006141 ORTHO05D007670 1.7e-55 219.9 210 63.3
PGR042G1406 Punica granatum HOM05D006141 ORTHO05D007670 3.9e-55 218.8 207 62.3
TPR.G2465 Trifolium pratense HOM05D006141 ORTHO05D007670 5.1e-55 218.4 211 60.2
GSVIVG01028253001 Vitis vinifera HOM05D006141 ORTHO05D007670 5.1e-55 218.4 206 62.6
TWI59G0338 Tripterygium wilfordii HOM05D006141 ORTHO05D007670 8.6e-55 217.6 213 62.4
QL12p034897 Quercus lobata HOM05D006141 ORTHO05D007670 2.5e-54 216.1 212 60.4
AL5G44810 Arabidopsis lyrata HOM05D006141 ORTHO05D007670 1.6e-53 213.4 222 59.0
Nitab4.5_0000222g0340 Nicotiana tabacum HOM05D006141 ORTHO05D007670 1.6e-53 213.4 219 59.4
Sabra14G0083000 Salix brachista HOM05D006141 ORTHO05D007670 1.6e-53 213.4 207 62.3
Migut.D00015 Erythranthe guttata HOM05D006141 ORTHO05D007670 4.7e-53 211.8 203 62.1
Medtr7g110620 Medicago truncatula HOM05D006141 ORTHO05D007670 4.7e-53 211.8 211 59.2
Thhalv10006233m.g Eutrema salsugineum HOM05D006141 ORTHO05D007670 6.2e-53 211.5 216 60.2
AT3G62140 Arabidopsis thaliana HOM05D006141 ORTHO05D007670 1.1e-52 210.7 215 58.1
MBI18_g10378_MAGBIO Magnolia biondii HOM05D006141 ORTHO05D007670 1.1e-52 210.7 201 63.7
Aa31LG10G16170 Aethionema arabicum HOM05D006141 ORTHO05D007670 1.4e-52 210.3 204 60.3
Aqoxy2G02498 Aquilegia oxysepala HOM05D006141 ORTHO05D007670 1.8e-52 209.9 205 62.0
THA.LOC104817433 Tarenaya hassleriana HOM05D006141 ORTHO05D007670 2.3e-52 209.5 200 59.5
CANSAT25G1526 Cannabis sativa HOM05D006141 ORTHO05D007670 3.1e-52 209.1 212 57.5
DCAR_012301 Daucus carota HOM05D006141 ORTHO05D007670 3.1e-52 209.1 200 61.0
Psat3g016880 Pisum sativum HOM05D006141 ORTHO05D007670 4.0e-52 208.8 211 58.3
Carub.0005s2889 Capsella rubella HOM05D006141 ORTHO05D007670 6.8e-52 208.0 215 58.6
Ca_09244_v3 Cicer arietinum L. HOM05D006141 ORTHO05D007670 1.2e-51 207.2 211 57.3
Rhsim01G0000200 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.2e-51 207.2 210 61.4
RcHm_v2.0_Chr3g0485921 Rosa chinensis HOM05D006141 ORTHO05D007670 1.5e-51 206.8 205 61.0
Glyma.19G221200 Glycine max HOM05D006141 ORTHO05D007670 2.0e-51 206.5 211 58.8
PSO210G0852 Papaver somniferum HOM05D006141 ORTHO05D007670 2.0e-51 206.5 206 59.2
Phvul.001G218100 Phaseolus vulgaris HOM05D006141 ORTHO05D007670 2.6e-51 206.1 211 58.3
COL.COLO4_23134 Corchorus olitorius HOM05D006141 ORTHO05D007670 3.4e-51 205.7 212 58.5
HanXRQChr06g0167971 Helianthus annuus HOM05D006141 ORTHO05D007670 3.4e-51 205.7 193 63.2
VMungo1383G2247 Vigna mungo HOM05D006141 ORTHO05D007670 5.8e-51 204.9 211 57.3
TAR362G0148 Trochodendron aralioides HOM05D006141 ORTHO05D007670 7.6e-51 204.5 203 60.6
CARHR172480 Cardamine hirsuta HOM05D006141 ORTHO05D007670 9.9e-51 204.1 199 60.3
Prupe.3G003000 Prunus persica HOM05D006141 ORTHO05D007670 9.9e-51 204.1 214 58.9
Hma1.2p1_0408F.1_g146310 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 1.3e-50 203.8 209 59.3
Glyma.03G224200 Glycine max HOM05D006141 ORTHO05D007670 1.7e-50 203.4 210 56.2
PSO761G0605 Papaver somniferum HOM05D006141 ORTHO05D007670 2.9e-50 202.6 206 58.3
SGA_v2.0_scaffold417G51257 Striga asiatica HOM05D006141 ORTHO05D007670 4.9e-50 201.8 208 59.6
FAN19G0972 Fragaria x ananassa HOM05D006141 ORTHO05D007670 6.4e-50 201.4 203 60.1
arahy.Tifrunner.gnm1.ann1.XETR8R Arachis hypogaea HOM05D006141 ORTHO05D007670 1.4e-49 200.3 226 53.5
FvH4_1g26260 Fragaria vesca HOM05D006141 ORTHO05D007670 1.4e-49 200.3 202 60.4
Sp5g01230 Schrenkiella parvula HOM05D006141 ORTHO05D007670 3.2e-49 199.1 221 56.1
C06p28110 Brassica napus HOM05D006141 ORTHO05D007670 4.1e-49 198.7 204 58.8
BolC6t37977H Brassica oleracea HOM05D006141 ORTHO05D007670 4.1e-49 198.7 204 58.8
MD17G1284800 Malus domestica HOM05D006141 ORTHO05D007670 5.4e-49 198.4 211 58.8
arahy.Tifrunner.gnm1.ann1.3ZI6V8 Arachis hypogaea HOM05D006141 ORTHO05D007670 7.1e-49 198.0 175 64.0
arahy.Tifrunner.gnm1.ann1.YFT3VK Arachis hypogaea HOM05D006141 ORTHO05D007670 7.1e-49 198.0 175 64.0
FAN23G3136 Fragaria x ananassa HOM05D006141 ORTHO05D007670 1.6e-48 196.8 203 58.6
HPP92_018284 Vanilla planifolia HOM05D006141 ORTHO05D007670 1.6e-48 196.8 203 58.1
AUR62001013 Chenopodium quinoa HOM05D006141 ORTHO05D007670 2.1e-48 196.4 224 53.6
FAN28G2755 Fragaria x ananassa HOM05D006141 ORTHO05D007670 2.1e-48 196.4 203 58.6
Sopen01g030090 Solanum pennellii HOM05D006141 ORTHO05D007670 2.1e-48 196.4 219 54.3
Actinidia20966 Actinidia chinensis HOM05D006141 ORTHO05D007670 3.5e-48 195.7 202 60.9
MSTRG.21729 Avicennia marina HOM05D006141 ORTHO05D007670 3.5e-48 195.7 212 59.0
CDE09G0801 Ceratophyllum demersum HOM05D006141 ORTHO05D007670 6.0e-48 194.9 201 56.2
ATR0796G189 Amborella trichopoda HOM05D006141 ORTHO05D007670 7.8e-48 194.5 196 59.2
AUR62004945 Chenopodium quinoa HOM05D006141 ORTHO05D007670 1.0e-47 194.1 224 53.1
Solyc01g068150.3 Solanum lycopersicum HOM05D006141 ORTHO05D007670 1.3e-47 193.7 209 55.0
Lalb_Chr18g0046401 Lupinus albus HOM05D006141 ORTHO05D007670 2.3e-47 193.0 210 55.2
CSS0000718 Camellia sinensis var. sinensis HOM05D006141 ORTHO05D007670 1.1e-46 190.7 179 62.0
SalBow6G5482 Salvia bowleyana HOM05D006141 ORTHO05D007670 1.9e-46 189.9 201 57.2
ECA236G4451 Erigeron canadensis HOM05D006141 ORTHO05D007670 7.3e-46 188.0 208 58.2
Dinv33165 Davidia involucrata HOM05D006141 ORTHO05D007670 6.2e-45 184.9 198 55.1
FAN26G1012 Fragaria x ananassa HOM05D006141 ORTHO05D007670 1.1e-44 184.1 224 53.1
BcaB02g07358 Brassica carinata HOM05D002572 ORTHO05D002800 1.4e-44 183.7 186 58.6
Cc01_g21800 Coffea canephora HOM05D006141 ORTHO05D007670 1.4e-44 183.7 204 55.4
A07p25870 Brassica napus HOM05D006141 ORTHO05D007670 1.8e-44 183.3 204 57.4
EL10Ac6g14128 Beta vulgaris HOM05D006141 ORTHO05D007670 1.2e-43 180.6 218 52.8
Ah.11g045950 Amaranthus hybridus HOM05D006141 ORTHO05D007670 2.6e-43 179.5 222 51.4
Hma1.2p1_0408F.1_g146320 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 4.4e-43 178.7 120 78.3
Lsat_1_v5_gn_8_167241 Lactuca sativa HOM05D006141 ORTHO05D007670 5.8e-43 178.3 201 57.7
Cpa.g.sc57.10 Carica papaya HOM05D006141 ORTHO05D007670 8.4e-42 174.5 149 66.4
BcaC07g40706 Brassica carinata HOM05D006141 ORTHO05D007670 1.1e-41 174.1 200 54.5
C08p37090 Brassica napus HOM05D006141 ORTHO05D007670 1.4e-41 173.7 203 55.2
BolC8t51287H Brassica oleracea HOM05D006141 ORTHO05D007670 1.4e-41 173.7 203 55.2
BcaC08g45187 Brassica carinata HOM05D006141 ORTHO05D007670 4.2e-41 172.2 132 70.5
A09p54230 Brassica napus HOM05D006141 ORTHO05D007670 1.2e-40 170.6 209 53.6
BraA09t40835Z Brassica rapa HOM05D006141 ORTHO05D007670 1.2e-40 170.6 209 53.6
SEGI_07518 Sequoiadendron giganteum HOM05D006141 ORTHO05D007670 1.2e-40 170.6 204 50.0
Peaxi162Scf00309g01021 Petunia axillaris HOM05D006141 ORTHO05D007670 1.6e-40 170.2 219 52.1
Os01g0321800 Oryza sativa ssp. japonica HOM05D006141 ORTHO05D007670 3.0e-39 166.0 194 51.5
unitig_578.g16642 Utricularia gibba HOM05D006141 ORTHO05D007670 3.9e-39 165.6 192 50.0
CAN.G100.55 Capsicum annuum HOM05D006141 ORTHO05D007670 1.4e-36 157.1 121 69.4
Zm00001eb340460 Zea mays HOM05D006141 ORTHO05D007670 1.4e-36 157.1 116 68.1
Rhsim01G0080900 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.8e-36 156.8 173 55.5
Rhsim01G0085900 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.0e-31 141.0 205 45.4
BcaB02g07360 Brassica carinata HOM05D006141 ORTHO05D007670 3.9e-31 139.0 91 76.9
BraA07t30234Z Brassica rapa HOM05D006141 ORTHO05D007670 2.5e-30 136.3 88 77.3
Ciclev10030010m.g Citrus clementina HOM05D006141 ORTHO05D007670 1.7e-26 123.6 210 43.8
Lj2A1216T56 Lonicera japonica HOM05D006141 ORTHO05D007670 1.7e-26 123.6 80 76.2
Ciclev10030079m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.4e-25 119.8 152 50.0
Ciclev10030249m.g Citrus clementina HOM05D006141 ORTHO05D007670 4.2e-25 119.0 152 50.7
Lj1g0014608 Lotus japonicus HOM05D006141 ORTHO05D007670 4.6e-24 115.5 210 41.9
Mapoly0026s0067 Marchantia polymorpha HOM05D006141 ORTHO05D007670 1.0e-23 114.4 205 37.6
Pp3c2_35190 Physcomitrium patens HOM05D006141 ORTHO05D007670 1.0e-23 114.4 194 41.8
Rhsim01G0086800 Rhododendron simsii HOM05D006141 ORTHO05D007670 8.7e-23 111.3 206 44.7
SHI33165 Sapria himalayana HOM05D006141 ORTHO05D007670 3.8e-18 95.9 134 44.0
Haze_05144 Corylus avellana HOM05D006141 ORTHO05D007670 8.7e-15 84.7 214 37.4
Rhsim01G0082900 Rhododendron simsii HOM05D006141 ORTHO05D007670 2.4e-12 76.6 164 37.8
Rhsim01G0081900 Rhododendron simsii HOM05D006141 ORTHO05D007670 4.1e-12 75.9 46 82.6
FAN03G1225 Fragaria x ananassa HOM05D006141 ORTHO05D007670 1.2e-11 74.3 44 75.0
CBR_g57079 Chara braunii HOM05D006141 ORTHO05D007670 3.4e-11 72.8 153 39.9
BcaC09g48717 Brassica carinata HOM05D001214 ORTHO05D001029 5.8e-11 72.0 45 75.6
AagrBONN_evm.TU.Sc2ySwM_368.766 Anthoceros agrestis HOM05D006141 ORTHO05D007670 5.5e-09 65.5 144 34.7
Nitab4.5_0008976g0040 Nicotiana tabacum HOM05D006141 ORTHO05D007670 2.1e-08 63.5 128 40.6
Rhsim12G0140700 Rhododendron simsii HOM05D006141 ORTHO05D007670 2.1e-08 63.5 153 39.9
DCAR_012300 Daucus carota HOM05D006141 ORTHO05D007670 4.6e-08 62.4 37 75.7
Cre11.g477250 Chlamydomonas reinhardtii HOM05D006141 ORTHO05D007670 6.7e-07 58.5 102 35.3


User provided reference genes

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