Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 5.9e-121 438.0 292 100.0
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 3.1e-98 362.5 293 79.5
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 8.5e-96 354.4 295 77.6
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.5e-92 343.6 301 79.1
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 2.0e-84 316.6 390 59.0
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 2.9e-80 302.8 289 70.6
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.5e-79 299.7 289 66.4
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 2.8e-78 296.2 297 71.0
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 2.8e-78 296.2 284 64.4
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 3.6e-78 295.8 289 67.8
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 4.7e-78 295.4 293 69.3
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.3e-77 293.1 293 66.9
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 3.0e-77 292.7 297 73.7
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.2e-76 290.8 292 64.7
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.6e-76 289.7 298 65.8
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 3.4e-76 289.3 291 68.7
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 4.4e-76 288.9 297 69.7
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.3e-75 287.3 297 67.7
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 1.7e-75 287.0 304 67.1
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.7e-75 287.0 279 62.0
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 2.2e-75 286.6 300 63.7
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.9e-75 286.2 296 69.6
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.9e-75 286.2 303 64.7
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 4.9e-75 285.4 304 62.2
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 8.3e-75 284.6 301 68.4
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 1.1e-74 284.3 306 64.1
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.4e-74 283.9 290 72.4
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.8e-74 283.5 298 60.1
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.8e-74 283.5 314 62.1
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.8e-74 283.5 308 69.2
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 1.8e-74 283.5 304 59.9
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 5.4e-74 282.0 304 69.1
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 9.2e-74 281.2 301 63.1
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 1.2e-73 280.8 307 66.4
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.2e-73 280.8 298 63.4
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.0e-73 280.0 305 63.0
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.0e-73 280.0 301 63.1
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.5e-73 279.3 279 67.7
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 4.6e-73 278.9 293 70.0
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 5.9e-73 278.5 315 58.4
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 5.9e-73 278.5 293 70.3
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 5.9e-73 278.5 291 66.0
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 7.8e-73 278.1 307 66.1
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.3e-72 277.3 291 67.0
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.3e-72 277.3 311 66.2
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 1.7e-72 276.9 287 76.0
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 1.7e-72 276.9 287 76.0
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 1.7e-72 276.9 300 75.0
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.3e-72 276.6 295 69.2
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 3.9e-72 275.8 294 66.7
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 5.0e-72 275.4 311 73.0
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 5.0e-72 275.4 309 65.0
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 8.6e-72 274.6 293 66.2
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 1.9e-71 273.5 303 66.3
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 2.5e-71 273.1 311 64.3
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 3.3e-71 272.7 279 69.9
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 5.6e-71 271.9 294 56.8
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.6e-70 270.4 298 67.4
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.6e-70 270.4 298 66.8
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 1.6e-70 270.4 305 65.9
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 3.6e-70 269.2 292 61.6
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 6.2e-70 268.5 291 72.5
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 6.2e-70 268.5 284 60.9
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 6.2e-70 268.5 286 60.8
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 8.0e-70 268.1 311 68.5
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 2.3e-69 266.5 292 65.8
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 3.1e-69 266.2 289 61.6
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 3.1e-69 266.2 289 61.6
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 5.2e-69 265.4 298 66.1
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.2e-68 264.2 290 63.1
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.2e-68 264.2 290 63.1
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 1.5e-68 263.8 292 66.4
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.5e-68 263.8 297 68.0
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 2.0e-68 263.5 290 60.0
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 2.6e-68 263.1 317 69.4
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 3.4e-68 262.7 307 59.6
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 4.4e-68 262.3 308 66.6
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 7.5e-68 261.5 291 66.0
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 7.5e-68 261.5 285 67.4
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 7.5e-68 261.5 306 62.7
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 1.3e-67 260.8 296 59.8
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 1.7e-67 260.4 318 64.8
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 2.9e-67 259.6 305 66.6
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.1e-66 257.7 291 64.9
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.4e-66 257.3 299 53.8
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 3.2e-66 256.1 318 64.2
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 4.1e-66 255.8 291 58.4
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 5.4e-66 255.4 280 64.6
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 5.4e-66 255.4 276 67.4
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.6e-65 253.8 308 66.9
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 2.0e-65 253.4 298 58.1
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 3.5e-65 252.7 287 65.5
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 4.6e-65 252.3 307 64.2
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 6.0e-65 251.9 285 63.5
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 6.0e-65 251.9 344 54.9
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 1.7e-64 250.4 289 55.7
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 3.0e-64 249.6 301 60.8
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 3.9e-64 249.2 289 68.9
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 5.0e-64 248.8 280 63.2
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 1.1e-63 247.7 292 59.2
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 2.8e-62 243.0 281 66.9
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 4.7e-62 242.3 300 65.3
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 4.7e-62 242.3 296 62.2
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 6.2e-62 241.9 311 60.8
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 2.3e-61 240.0 297 54.5
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 4.0e-61 239.2 306 62.4
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 1.2e-60 237.7 305 62.6
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 1.5e-60 237.3 275 53.5
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 5.8e-60 235.3 292 58.2
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 1.3e-59 234.2 304 63.5
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 2.2e-59 233.4 294 54.8
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 8.3e-59 231.5 301 63.8
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.4e-58 230.7 309 56.3
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 1.4e-58 230.7 313 58.5
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 1.4e-58 230.7 302 56.0
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 1.9e-58 230.3 297 56.6
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 3.2e-58 229.6 299 57.5
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 3.2e-58 229.6 259 60.2
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 3.2e-58 229.6 284 58.5
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 4.1e-58 229.2 313 61.3
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 4.1e-58 229.2 315 56.2
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 5.4e-58 228.8 307 53.7
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 7.1e-58 228.4 306 51.6
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 1.6e-57 227.3 288 61.8
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.7e-56 223.8 293 54.3
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 3.9e-56 222.6 301 57.8
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 6.6e-56 221.9 306 64.1
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.9e-55 220.3 301 57.1
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 4.3e-55 219.2 282 58.2
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.8e-54 216.5 289 61.9
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 4.7e-54 215.7 285 60.4
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 8.1e-54 214.9 285 55.4
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 1.2e-52 211.1 316 60.4
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 1.3e-51 207.6 296 52.4
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 8.4e-51 204.9 295 55.9
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.4e-50 204.1 292 55.5
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.3e-48 196.8 121 74.4
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 1.6e-46 190.7 128 71.9
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 8.9e-45 184.9 297 51.9
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 2.6e-44 183.3 230 64.3
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 1.1e-42 177.9 225 57.8
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.4e-42 176.8 268 52.2
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 7.1e-42 175.3 289 52.2
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 7.1e-42 175.3 304 49.7
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.3e-40 171.0 131 65.6
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 3.0e-40 169.9 122 68.9
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 8.7e-40 168.3 121 70.2
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 3.6e-38 162.9 134 62.7
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 4.8e-38 162.5 131 64.1
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 6.2e-38 162.2 296 50.3
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 2.0e-36 157.1 104 76.0
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 2.4e-34 150.2 326 50.6
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 1.5e-31 141.0 291 45.7
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 2.1e-30 137.1 123 56.1
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 6.9e-29 132.1 305 48.9
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 7.6e-28 128.6 101 65.3
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 4.9e-27 125.9 194 54.1
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 7.1e-26 122.1 122 55.7
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 1.2e-25 121.3 78 78.2
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.6e-25 120.9 80 75.0
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 2.7e-25 120.2 88 72.7
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 1.0e-24 118.2 285 48.8
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 3.3e-23 113.2 90 72.2
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 8.2e-22 108.6 193 69.4
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.4e-21 107.8 79 72.2
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 1.8e-21 107.5 80 71.2
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.7e-19 100.9 68 75.0
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.4e-18 97.8 63 74.6
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 2.5e-18 97.1 81 59.3
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.2e-18 96.7 95 60.0
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 2.1e-17 94.0 111 49.5
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.9e-15 87.4 62 64.5
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.9e-15 87.4 83 60.2
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 4.8e-14 82.8 58 63.8
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 6.3e-14 82.4 128 40.6
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.8e-11 73.2 44 81.8
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 3.8e-11 73.2 79 54.4
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 6.1e-09 65.9 77 50.6
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 7.9e-09 65.5 261 44.4
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 8.7e-08 62.0 64 53.1
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.5e-07 61.2 80 46.2
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 5.7e-07 59.3 46 69.6


User provided reference genes

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