Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005960 Sechium edule HOM05D002144 ORTHO05D002170 1.0e-44 183.0 90 100.0
ClCG03G017140 Citrullus lanatus HOM05D002144 ORTHO05D002170 2.6e-19 98.6 77 66.2
Sed0007798 Sechium edule HOM05D002144 ORTHO05D002170 5.4e-17 90.9 85 58.8
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 5.6e-14 80.9 85 51.8
arahy.Tifrunner.gnm1.ann1.FS7ZHJ Arachis hypogaea HOM05D002144 ORTHO05D002170 7.3e-14 80.5 85 54.1
CsaV3_2G006690 Cucumis sativus L. HOM05D002144 ORTHO05D002170 1.2e-13 79.7 85 51.8
Thecc.05G314100 Theobroma cacao HOM05D002144 ORTHO05D002170 2.8e-13 78.6 85 52.9
Cfa006639 Carpinus fangiana HOM05D002144 ORTHO05D002170 3.6e-13 78.2 86 53.5
Haze_04128 Corylus avellana HOM05D002144 ORTHO05D002170 3.6e-13 78.2 86 53.5
Ca_09348_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 4.7e-13 77.8 85 51.8
Medtr7g112860 Medicago truncatula HOM05D002144 ORTHO05D002170 4.7e-13 77.8 85 50.6
Sc09g0002900 Simmondsia chinensis HOM05D002144 ORTHO05D002170 4.7e-13 77.8 76 55.3
MELO3C004219.2 Cucumis melo HOM05D002144 ORTHO05D002170 6.2e-13 77.4 85 48.2
Duzib177G0824 Durio zibethinus HOM05D002144 ORTHO05D002170 6.2e-13 77.4 86 53.5
Gohir.A11G268700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 6.2e-13 77.4 85 51.8
Gohir.D11G278700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 6.2e-13 77.4 85 51.8
Lj1g0021138 Lotus japonicus HOM05D002144 ORTHO05D002170 6.2e-13 77.4 76 55.3
Gorai.007G300900 Gossypium raimondii HOM05D002144 ORTHO05D002170 8.1e-13 77.0 85 51.8
Psat3g011320 Pisum sativum HOM05D002144 ORTHO05D002170 8.1e-13 77.0 76 56.6
Glyma.03G234800 Glycine max HOM05D002144 ORTHO05D002170 1.1e-12 76.6 85 51.8
Glyma.19G232400 Glycine max HOM05D002144 ORTHO05D002170 1.1e-12 76.6 85 51.8
QL03p019949 Quercus lobata HOM05D002144 ORTHO05D002170 1.1e-12 76.6 85 50.6
Duzib106G0149 Durio zibethinus HOM05D002144 ORTHO05D002170 1.4e-12 76.3 86 53.5
Manes.09G171400 Manihot esculenta HOM05D002144 ORTHO05D002170 1.4e-12 76.3 85 51.8
CARHR002160 Cardamine hirsuta HOM05D002144 ORTHO05D002170 1.8e-12 75.9 87 49.4
CiPaw.07G022600 Carya illinoinensis HOM05D002144 ORTHO05D002170 2.4e-12 75.5 85 48.2
COL.COLO4_10536 Corchorus olitorius HOM05D002144 ORTHO05D002170 2.4e-12 75.5 85 50.6
Lalb_Chr18g0045821 Lupinus albus HOM05D002144 ORTHO05D002170 2.4e-12 75.5 85 50.6
Carub.0002s0799 Capsella rubella HOM05D002144 ORTHO05D002170 3.1e-12 75.1 85 51.8
Ciclev10002843m.g Citrus clementina HOM05D002144 ORTHO05D002170 3.1e-12 75.1 86 48.8
Sed0012165 Sechium edule HOM05D002144 ORTHO05D002170 3.1e-12 75.1 85 48.2
CARHR289760 Cardamine hirsuta HOM05D002144 ORTHO05D002170 4.0e-12 74.7 85 49.4
CiPaw.08G161100 Carya illinoinensis HOM05D002144 ORTHO05D002170 5.3e-12 74.3 85 49.4
THA.LOC104820752 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 5.3e-12 74.3 85 49.4
GSVIVG01031183001 Vitis vinifera HOM05D002144 ORTHO05D002170 5.3e-12 74.3 86 47.7
Gohir.A13G174700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 6.9e-12 73.9 85 49.4
Gohir.D13G180500 Gossypium hirsutum HOM05D002144 ORTHO05D002170 6.9e-12 73.9 85 49.4
Gorai.013G205900 Gossypium raimondii HOM05D002144 ORTHO05D002170 6.9e-12 73.9 85 49.4
Hma1.2p1_1021F.1_g248660 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 6.9e-12 73.9 85 50.6
Manes.08G116600 Manihot esculenta HOM05D002144 ORTHO05D002170 6.9e-12 73.9 73 53.4
THA.LOC104805892 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 6.9e-12 73.9 73 53.4
Aa31LG2G11660 Aethionema arabicum HOM05D002144 ORTHO05D002170 1.2e-11 73.2 86 47.7
Thhalv10029065m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 1.2e-11 73.2 85 48.2
Oeu017267.1 Olea europaea HOM05D002144 ORTHO05D002170 1.2e-11 73.2 85 51.8
A02p24940 Brassica napus HOM05D002144 ORTHO05D002170 1.5e-11 72.8 83 47.0
BraA02t07484Z Brassica rapa HOM05D002144 ORTHO05D002170 1.5e-11 72.8 83 47.0
Duzib128G0499 Durio zibethinus HOM05D002144 ORTHO05D002170 1.5e-11 72.8 85 48.2
TPR.G33200 Trifolium pratense HOM05D002144 ORTHO05D002170 1.5e-11 72.8 85 48.2
arahy.Tifrunner.gnm1.ann1.DGZF1S Arachis hypogaea HOM05D002144 ORTHO05D002170 2.0e-11 72.4 74 55.4
arahy.Tifrunner.gnm1.ann1.TTE3SB Arachis hypogaea HOM05D002144 ORTHO05D002170 2.0e-11 72.4 74 55.4
VMungo0720G1086 Vigna mungo HOM05D002144 ORTHO05D002170 2.0e-11 72.4 73 52.1
Eucgr.B01910 Eucalyptus grandis HOM05D002144 ORTHO05D002170 2.6e-11 72.0 76 51.3
Phvul.006G089000 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 2.6e-11 72.0 86 48.8
PGR083G0389 Punica granatum HOM05D002144 ORTHO05D002170 2.6e-11 72.0 85 50.6
VMungo0540G2203 Vigna mungo HOM05D002144 ORTHO05D002170 2.6e-11 72.0 86 48.8
A03p30880 Brassica napus HOM05D002144 ORTHO05D002170 3.4e-11 71.6 85 45.9
BraA03t12265Z Brassica rapa HOM05D002144 ORTHO05D002170 3.4e-11 71.6 85 45.9
AUR62005218 Chenopodium quinoa HOM05D002144 ORTHO05D002170 3.4e-11 71.6 73 50.7
Psat6g150920 Pisum sativum HOM05D002144 ORTHO05D002170 3.4e-11 71.6 73 53.4
AL1G65760 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 4.4e-11 71.2 76 51.3
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 4.4e-11 71.2 85 45.9
BcaC01g06737 Brassica carinata HOM05D002144 ORTHO05D002170 4.4e-11 71.2 85 45.9
C03p37650 Brassica napus HOM05D002144 ORTHO05D002170 4.4e-11 71.2 85 45.9
BolC3t16055H Brassica oleracea HOM05D002144 ORTHO05D002170 4.4e-11 71.2 85 45.9
Sp6g02660 Schrenkiella parvula HOM05D002144 ORTHO05D002170 4.4e-11 71.2 87 46.0
AT1G56220 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 5.8e-11 70.9 86 46.5
BcaC03g16170 Brassica carinata HOM05D002144 ORTHO05D002170 5.8e-11 70.9 83 45.8
C02p39100 Brassica napus HOM05D002144 ORTHO05D002170 5.8e-11 70.9 83 45.8
BolC2t09920H Brassica oleracea HOM05D002144 ORTHO05D002170 5.8e-11 70.9 83 45.8
TWI56G1061 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 5.8e-11 70.9 85 48.2
BcaB05g23660 Brassica carinata HOM05D002144 ORTHO05D002170 7.6e-11 70.5 83 44.6
Prupe.6G319600 Prunus persica HOM05D002144 ORTHO05D002170 7.6e-11 70.5 76 51.3
arahy.Tifrunner.gnm1.ann1.1G1J9V Arachis hypogaea HOM05D002144 ORTHO05D002170 9.9e-11 70.1 79 51.9
Cpa.g.sc327.9 Carica papaya HOM05D002144 ORTHO05D002170 9.9e-11 70.1 73 49.3
BraA09t35863Z Brassica rapa HOM05D002144 ORTHO05D002170 1.3e-10 69.7 83 45.8
Nitab4.5_0003113g0120 Nicotiana tabacum HOM05D002144 ORTHO05D002170 1.3e-10 69.7 75 52.0
BcaB01g02012 Brassica carinata HOM05D002144 ORTHO05D002170 2.2e-10 68.9 85 43.5
BcaC04g24010 Brassica carinata HOM05D002144 ORTHO05D002170 2.2e-10 68.9 84 46.4
BolC9t53152H Brassica oleracea HOM05D002144 ORTHO05D002170 2.2e-10 68.9 84 46.4
Dinv30825 Davidia involucrata HOM05D002144 ORTHO05D004617 2.2e-10 68.9 86 46.5
Lj5g0009461 Lotus japonicus HOM05D002144 ORTHO05D002170 2.2e-10 68.9 75 50.7
Medtr1g083440 Medicago truncatula HOM05D002144 ORTHO05D002170 2.2e-10 68.9 73 49.3
Nitab4.5_0007800g0010 Nicotiana tabacum HOM05D002144 ORTHO05D002170 2.2e-10 68.9 75 52.0
Phvul.007G197700 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 2.2e-10 68.9 73 50.7
Eucgr.H04545 Eucalyptus grandis HOM05D002144 ORTHO05D002170 2.9e-10 68.6 81 49.4
Gorai.007G341000 Gossypium raimondii HOM05D002144 ORTHO05D002170 2.9e-10 68.6 86 46.5
Hma1.2p1_0472F.1_g159670 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 2.9e-10 68.6 74 54.1
Nn3g21509 Nelumbo nucifera HOM05D002144 ORTHO05D002170 2.9e-10 68.6 71 50.7
TAR365G0709 Trochodendron aralioides HOM05D002144 ORTHO05D002170 2.9e-10 68.6 74 54.1
FvH4_6g06830 Fragaria vesca HOM05D002144 ORTHO05D002170 3.8e-10 68.2 75 52.0
FAN09G2251 Fragaria x ananassa HOM05D002144 ORTHO05D002170 3.8e-10 68.2 75 52.0
FAN14G0731 Fragaria x ananassa HOM05D002144 ORTHO05D002170 3.8e-10 68.2 75 52.0
Actinidia21500 Actinidia chinensis HOM05D002144 ORTHO05D002170 4.9e-10 67.8 83 49.4
BcaC01g01556 Brassica carinata HOM05D002144 ORTHO05D002170 4.9e-10 67.8 85 43.5
C03p93120 Brassica napus HOM05D002144 ORTHO05D002170 4.9e-10 67.8 85 43.5
BolC3t21612H Brassica oleracea HOM05D002144 ORTHO05D002170 4.9e-10 67.8 85 43.5
Glyma.20G237200 Glycine max HOM05D002144 ORTHO05D002170 4.9e-10 67.8 73 50.7
Actinidia19775 Actinidia chinensis HOM05D002144 ORTHO05D002170 6.4e-10 67.4 83 49.4
CsaV3_1G038820 Cucumis sativus L. HOM05D002144 ORTHO05D002170 6.4e-10 67.4 49 67.3
Aqoxy5G00761 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 8.4e-10 67.0 67 49.3
C09p02240 Brassica napus HOM05D002144 ORTHO05D002170 8.4e-10 67.0 85 43.5
Dinv40350 Davidia involucrata HOM05D002144 ORTHO05D002170 8.4e-10 67.0 86 46.5
Gohir.D11G309100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 8.4e-10 67.0 76 50.0
MD12G1212000 Malus domestica HOM05D002144 ORTHO05D002170 8.4e-10 67.0 79 49.4
Potri.005G024250 Populus trichocarpa HOM05D002144 ORTHO05D002170 8.4e-10 67.0 76 50.0
Solyc01g099840.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 8.4e-10 67.0 73 50.7
Sopen00g009360 Solanum pennellii HOM05D002144 ORTHO05D002170 8.4e-10 67.0 73 50.7
Sopen01g043350 Solanum pennellii HOM05D002144 ORTHO05D002170 8.4e-10 67.0 73 50.7
Gohir.A11G294400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.1e-09 66.6 86 46.5
Rhsim07G0190700 Rhododendron simsii HOM05D002144 ORTHO05D002170 1.1e-09 66.6 74 52.7
PGSC0003DMG400024720 Solanum tuberosum HOM05D002144 ORTHO05D002170 1.1e-09 66.6 73 50.7
A09p02140 Brassica napus HOM05D002144 ORTHO05D002170 1.4e-09 66.2 84 42.9
Sabra05G0029700 Salix brachista HOM05D002144 ORTHO05D002170 1.4e-09 66.2 76 50.0
HanXRQChr11g0339851 Helianthus annuus HOM05D002144 ORTHO05D002170 1.9e-09 65.9 67 50.7
MD04G1198800 Malus domestica HOM05D002144 ORTHO05D002170 1.9e-09 65.9 71 50.7
SalBow7G0387 Salvia bowleyana HOM05D002144 ORTHO05D002170 1.9e-09 65.9 69 50.7
Hund07106 Selenicereus undatus HOM05D002144 ORTHO05D002170 2.4e-09 65.5 75 49.3
AUR62000749 Chenopodium quinoa HOM05D002144 ORTHO05D002170 3.2e-09 65.1 82 50.0
AUR62000750 Chenopodium quinoa HOM05D002144 ORTHO05D002170 3.2e-09 65.1 82 50.0
Glyma.10G151000 Glycine max HOM05D002144 ORTHO05D002170 3.2e-09 65.1 71 49.3
Zm00001eb394970 Zea mays HOM05D002144 ORTHO05D002170 3.2e-09 65.1 74 45.9
CAN.G1459.22 Capsicum annuum HOM05D002144 ORTHO05D002170 4.2e-09 64.7 73 49.3
Os03g0342900 Oryza sativa ssp. japonica HOM05D002144 ORTHO05D002170 4.2e-09 64.7 70 48.6
CANSAT56G3315 Cannabis sativa HOM05D002144 ORTHO05D002170 5.4e-09 64.3 87 44.8
TPR.G17717 Trifolium pratense HOM05D002144 ORTHO05D002170 5.4e-09 64.3 74 45.9
vmacro19696 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 5.4e-09 64.3 67 52.2
Atru.chr2.81 Acer truncatum HOM05D002144 ORTHO05D002170 7.1e-09 63.9 85 44.7
CDE05G2734 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 7.1e-09 63.9 76 47.4
Peaxi162Scf00037g01327 Petunia axillaris HOM05D002144 ORTHO05D002170 7.1e-09 63.9 75 49.3
RcHm_v2.0_Chr3g0456211 Rosa chinensis HOM05D002144 ORTHO05D002170 9.3e-09 63.5 72 50.0
Zm00001eb016420 Zea mays HOM05D002144 ORTHO05D002170 9.3e-09 63.5 75 46.7
MSTRG.27979 Avicennia marina HOM05D002144 ORTHO05D002170 1.2e-08 63.2 70 51.4
PGR031G3340 Punica granatum HOM05D002144 ORTHO05D002170 1.2e-08 63.2 83 48.2
Lalb_Chr21g0310551 Lupinus albus HOM05D002144 ORTHO05D002170 2.1e-08 62.4 73 47.9
Rhsim05G0137800 Rhododendron simsii HOM05D002144 ORTHO05D002170 2.1e-08 62.4 67 50.7
PSO724G0168 Papaver somniferum HOM05D002144 ORTHO05D002170 2.7e-08 62.0 69 49.3
SGA_v2.0_scaffold80G25892 Striga asiatica HOM05D002144 ORTHO05D002170 2.7e-08 62.0 70 51.4
SGA_v2.0_scaffold81G26097 Striga asiatica HOM05D002144 ORTHO05D002170 2.7e-08 62.0 70 50.0
CSS0017301 Camellia sinensis var. sinensis HOM05D002144 ORTHO05D002170 3.5e-08 61.6 71 49.3
HanXRQChr11g0320831 Helianthus annuus HOM05D002144 ORTHO05D002170 3.5e-08 61.6 69 50.7
EL10Ac4g09903 Beta vulgaris HOM05D002144 ORTHO05D002170 4.6e-08 61.2 81 43.2
MELO3C015306.2 Cucumis melo HOM05D002144 ORTHO05D002170 4.6e-08 61.2 39 74.4
Nn4g25785 Nelumbo nucifera HOM05D002144 ORTHO05D002170 4.6e-08 61.2 71 47.9
Sc16g0008780 Simmondsia chinensis HOM05D002144 ORTHO05D002170 4.6e-08 61.2 69 47.8
Migut.N02089 Erythranthe guttata HOM05D002144 ORTHO05D002170 6.0e-08 60.8 71 49.3
Cc02_g34280 Coffea canephora HOM05D002144 ORTHO05D002170 7.8e-08 60.5 74 47.3
PSO729G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 7.8e-08 60.5 69 47.8
HPP92_011851 Vanilla planifolia HOM05D002144 ORTHO05D002170 7.8e-08 60.5 72 47.2
Ah.04g161190 Amaranthus hybridus HOM05D002144 ORTHO05D002170 1.0e-07 60.1 82 41.5
MSTRG.5114 Avicennia marina HOM05D002144 ORTHO05D002170 1.0e-07 60.1 70 50.0
CSS0005363 Camellia sinensis var. sinensis HOM05D002144 ORTHO05D002170 1.0e-07 60.1 86 46.5
Nitab4.5_0005982g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 1.0e-07 60.1 70 47.1
Sabra13G0016800 Salix brachista HOM05D002144 ORTHO05D002170 1.3e-07 59.7 76 43.4
CDE11G0597 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 1.7e-07 59.3 71 43.7
DCAR_029386 Daucus carota HOM05D002144 ORTHO05D002170 1.7e-07 59.3 75 42.7
HanXRQChr03g0074691 Helianthus annuus HOM05D002144 ORTHO05D002170 1.7e-07 59.3 67 49.3
Peaxi162Scf00471g00710 Petunia axillaris HOM05D002144 ORTHO05D002170 1.7e-07 59.3 70 42.9
Potri.013G014900 Populus trichocarpa HOM05D002144 ORTHO05D002170 1.7e-07 59.3 76 43.4
Lsat_1_v5_gn_7_71780 Lactuca sativa HOM05D002144 ORTHO05D002170 2.3e-07 58.9 73 50.7
Sabra13G0012800 Salix brachista HOM05D002144 ORTHO05D002170 2.3e-07 58.9 76 43.4
unitig_749.g13561 Utricularia gibba HOM05D002144 ORTHO05D002170 3.9e-07 58.2 72 47.2
Zm00001eb313950 Zea mays HOM05D002144 ORTHO05D002170 3.9e-07 58.2 67 50.7
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 6.6e-07 57.4 67 44.8
Hund21717 Selenicereus undatus HOM05D002144 ORTHO05D002170 1.1e-06 56.6 77 44.2
Nitab4.5_0000041g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 1.5e-06 56.2 69 49.3
Lsat_1_v5_gn_9_124660 Lactuca sativa HOM05D002144 ORTHO05D002170 1.9e-06 55.8 67 47.8
MBI18_g06040_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 1.9e-06 55.8 71 45.1
Aqoxy7G00990 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 4.3e-06 54.7 67 49.3
DCAR_003365 Daucus carota HOM05D002144 ORTHO05D002170 5.6e-06 54.3 70 50.0
HPP92_006918 Vanilla planifolia HOM05D002144 ORTHO05D002170 7.3e-06 53.9 75 42.7


User provided reference genes

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