Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 8.0e-160 567.0 278 100.0
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 3.0e-130 468.8 274 84.3
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 5.2e-119 431.4 287 76.7
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 7.3e-113 411.0 274 76.6
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 2.5e-105 386.0 278 64.7
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 1.4e-103 380.2 273 64.8
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 1.5e-102 376.7 273 62.6
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 4.4e-102 375.2 273 64.1
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 7.6e-102 374.4 277 61.4
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 1.3e-101 373.6 274 63.9
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 2.2e-101 372.9 271 63.5
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 1.1e-100 370.5 273 63.4
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 1.4e-100 370.2 273 64.1
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.9e-100 369.8 271 63.1
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 4.2e-100 368.6 275 61.8
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 4.2e-100 368.6 271 63.8
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 7.1e-100 367.9 275 61.8
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 2.7e-99 365.9 270 61.9
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 7.8e-99 364.4 272 61.0
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 7.8e-99 364.4 273 61.9
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 1.0e-98 364.0 273 62.6
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 3.0e-98 362.5 273 60.1
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 5.1e-98 361.7 273 61.9
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 5.1e-98 361.7 273 62.3
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 5.1e-98 361.7 277 61.4
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 6.6e-98 361.3 274 63.5
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 1.1e-97 360.5 270 61.5
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 1.9e-97 359.8 273 62.6
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 5.6e-97 358.2 280 61.1
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 7.3e-97 357.8 297 58.9
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 7.3e-97 357.8 272 61.8
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 1.3e-96 357.1 272 59.9
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 4.8e-96 355.1 273 60.4
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 6.2e-96 354.8 273 60.8
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 8.1e-96 354.4 271 61.3
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 1.4e-95 353.6 274 59.1
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 1.8e-95 353.2 274 59.5
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 2.4e-95 352.8 262 61.8
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 2.0e-94 349.7 273 59.0
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 2.6e-94 349.4 271 60.5
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 5.8e-94 348.2 274 59.1
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 8.4e-93 344.4 271 58.3
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 1.4e-92 343.6 268 59.7
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 1.9e-92 343.2 268 59.7
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 4.2e-92 342.0 268 59.7
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 1.2e-91 340.5 271 60.5
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 1.2e-91 340.5 271 60.5
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 1.2e-91 340.5 271 60.5
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 3.9e-90 335.5 273 56.4
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 6.7e-90 334.7 273 57.5
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 1.9e-89 333.2 272 56.6
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 1.6e-88 330.1 279 55.9
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 2.1e-88 329.7 274 55.5
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 2.1e-88 329.7 232 65.5
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 5.3e-87 325.1 188 83.5
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 2.6e-86 322.8 271 56.1
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 2.9e-85 319.3 277 56.3
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 6.4e-85 318.2 284 54.2
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 1.1e-84 317.4 222 64.4
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 5.5e-84 315.1 302 51.3
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 1.6e-83 313.5 224 63.8
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 3.9e-82 308.9 272 52.9
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 1.5e-81 307.0 225 64.0
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 2.5e-81 306.2 279 53.8
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 1.3e-80 303.9 277 52.3
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 1.6e-80 303.5 315 48.9
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 2.1e-80 303.1 277 53.1
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 6.2e-80 301.6 271 51.3
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 1.4e-79 300.4 279 52.0
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 1.7e-77 293.5 231 58.4
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 9.3e-76 287.7 289 49.8
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 1.2e-75 287.3 269 50.9
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 5.7e-73 278.5 267 48.3
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 6.9e-71 271.6 233 54.1
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 7.7e-70 268.1 267 46.4
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 3.9e-66 255.8 183 64.5
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 1.7e-64 250.4 271 46.1
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 2.6e-62 243.0 176 66.5
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 2.9e-61 239.6 276 46.4
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 3.8e-61 239.2 281 43.4
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 3.8e-61 239.2 135 85.2
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 1.4e-58 230.7 181 63.0
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 3.0e-58 229.6 330 40.0
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 2.0e-57 226.9 164 64.6
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 9.7e-57 224.6 170 61.8
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 7.0e-55 218.4 273 43.6
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 2.3e-50 203.4 186 53.2
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 1.1e-47 194.5 248 43.1
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 3.5e-46 189.5 229 43.7
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 3.6e-43 179.5 279 35.5
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 5.9e-38 162.2 134 54.5
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.9e-36 157.1 115 63.5
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.6e-35 154.1 130 57.7
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 9.8e-33 144.8 309 32.7
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 1.7e-32 144.1 147 51.0
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 3.8e-29 132.9 83 72.3
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 6.1e-19 99.0 123 44.7
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 1.0e-18 98.2 247 30.4
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 8.9e-18 95.1 129 39.5
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.3e-12 76.6 239 27.2
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 1.6e-11 74.3 84 46.4
ClCG05G021770 Citrullus lanatus HOM05D007318 ORTHO05D009289 6.2e-11 72.4 39 84.6
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.1e-10 71.6 248 25.4
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 6.8e-10 68.9 162 32.1
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 2.0e-09 67.4 163 31.9
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 2.0e-09 67.4 223 26.0
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 2.6e-09 67.0 162 33.3
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 5.8e-09 65.9 243 25.1
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 7.5e-09 65.5 161 31.1
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 7.5e-09 65.5 249 24.9
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 9.8e-09 65.1 167 29.9
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 1.3e-08 64.7 145 30.3
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.3e-08 64.7 212 26.9
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 1.7e-08 64.3 79 43.0
TAR636G1493 Trochodendron aralioides HOM05D007318 ORTHO05D009289 2.2e-08 63.9 52 57.7
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 2.9e-08 63.5 164 29.9
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 4.9e-08 62.8 220 25.5
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 4.9e-08 62.8 158 30.4
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 4.9e-08 62.8 256 24.2
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 4.9e-08 62.8 172 27.3
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 6.4e-08 62.4 241 24.1
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 8.3e-08 62.0 222 25.7
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.9e-07 60.8 36 66.7
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 3.2e-07 60.1 213 25.8
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 3.2e-07 60.1 161 28.6
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 3.2e-07 60.1 143 29.4
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 4.1e-07 59.7 179 27.4
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 5.4e-07 59.3 213 25.4
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 5.4e-07 59.3 176 27.3
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 5.4e-07 59.3 162 28.4
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 5.4e-07 59.3 158 29.7
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 5.4e-07 59.3 159 29.6
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 7.1e-07 58.9 151 28.5
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 9.2e-07 58.5 212 26.4
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 9.2e-07 58.5 161 28.6
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 9.2e-07 58.5 208 24.5
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 1.2e-06 58.2 215 26.5
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 1.2e-06 58.2 162 27.8
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.6e-06 57.8 212 24.5
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.6e-06 57.8 210 24.3
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.6e-06 57.8 160 31.9
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 2.1e-06 57.4 161 29.8
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 2.7e-06 57.0 199 26.1
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 2.7e-06 57.0 159 25.8
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 2.7e-06 57.0 221 24.9
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 2.7e-06 57.0 158 29.7
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.7e-06 57.0 158 29.7
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 2.7e-06 57.0 246 25.2
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 3.5e-06 56.6 199 26.1
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 3.5e-06 56.6 199 26.1
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.5e-06 56.6 163 28.8
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 3.5e-06 56.6 160 31.2
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 4.6e-06 56.2 154 27.3
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 4.6e-06 56.2 187 26.7
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 4.6e-06 56.2 160 29.4
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 4.6e-06 56.2 246 25.2
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 6.0e-06 55.8 160 31.2
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 6.0e-06 55.8 161 27.3
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 7.8e-06 55.5 238 26.1


User provided reference genes

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