Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 0.0e+00 1557.0 831 100.0
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 2.8e-293 1011.9 837 68.6
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 5.8e-291 1004.2 818 68.8
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 1.4e-263 913.3 839 62.5
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 2.8e-253 879.0 830 61.8
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 2.9e-125 453.8 831 41.0
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 9.5e-116 422.2 848 38.0
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 4.0e-114 416.8 854 37.2
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 1.7e-109 401.4 804 38.2
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 1.1e-106 392.1 849 37.1
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 5.2e-106 389.8 839 37.1
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 7.5e-105 386.0 902 35.1
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 2.2e-104 384.4 870 37.0
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 8.9e-98 362.5 863 35.3
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 4.4e-97 360.1 869 35.3
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 2.2e-96 357.8 831 36.8
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 2.9e-96 357.5 850 34.7
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 3.2e-95 354.0 856 35.9
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 9.2e-95 352.4 812 37.7
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 3.9e-93 347.1 703 38.3
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 8.6e-93 345.9 860 35.3
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 8.6e-93 345.9 905 33.9
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 9.5e-92 342.4 804 35.0
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.4e-90 338.6 880 34.8
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 1.7e-88 331.6 842 34.1
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 6.4e-88 329.7 820 34.5
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 1.9e-87 328.2 855 33.6
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 2.4e-87 327.8 830 34.6
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 1.7e-85 321.6 839 34.2
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 5.1e-85 320.1 822 34.1
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 6.6e-85 319.7 863 32.3
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 4.7e-83 313.5 831 33.6
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 8.1e-83 312.8 842 34.3
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 8.1e-83 312.8 903 32.1
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 5.2e-82 310.1 879 32.3
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 9.9e-81 305.8 901 31.6
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 3.8e-80 303.9 820 32.9
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 6.4e-80 303.1 850 33.3
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.1e-79 302.4 895 32.0
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.9e-79 301.6 901 31.7
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 1.2e-78 298.9 897 31.8
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 3.3e-76 290.8 842 32.8
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 3.6e-75 287.3 801 32.7
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 2.6e-73 281.2 770 33.4
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.2e-72 278.1 791 33.5
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 1.9e-71 275.0 957 30.1
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.4e-71 274.6 895 30.7
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 4.2e-71 273.9 829 31.4
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.5e-65 253.8 875 30.6
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 1.3e-64 252.3 554 35.6
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 2.4e-63 248.1 913 30.0
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 9.3e-63 246.1 803 32.3
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 3.5e-62 244.2 610 34.8
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 5.1e-61 240.4 898 29.5
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.5e-60 238.0 971 28.7
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 2.8e-59 234.6 559 34.5
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 3.7e-59 234.2 895 29.9
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 3.7e-59 234.2 989 28.0
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 4.8e-59 233.8 556 36.5
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 1.5e-57 228.8 856 29.3
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 3.4e-57 227.6 859 27.4
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 4.5e-57 227.3 978 29.2
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 7.6e-57 226.5 848 30.1
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 3.8e-56 224.2 605 32.4
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.1e-55 222.6 844 30.5
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 1.4e-55 222.2 854 28.2
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 1.9e-55 221.9 863 28.5
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 7.1e-55 219.9 793 29.8
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 9.3e-55 219.5 864 28.0
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 3.5e-54 217.6 845 29.3
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 4.6e-54 217.2 849 27.8
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.3e-53 215.7 852 28.3
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 1.3e-53 215.7 859 27.9
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 3.0e-53 214.5 852 27.3
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 7.4e-52 209.9 573 34.2
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 8.2e-51 206.5 849 27.8
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 6.9e-50 203.4 844 27.0
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 1.2e-49 202.6 856 27.8
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 1.0e-48 199.5 849 27.1
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 1.3e-48 199.1 839 27.4
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 2.2e-48 198.4 841 27.2
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 2.9e-48 198.0 844 27.8
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 2.7e-46 191.4 848 27.4
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 1.0e-45 189.5 839 27.2
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 3.9e-45 187.6 575 32.3
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 2.2e-43 181.8 831 27.4
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 5.3e-42 177.2 901 26.0
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 7.7e-41 173.3 168 57.7
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 1.0e-40 172.9 865 25.5
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.0e-40 172.9 811 26.6
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 8.5e-40 169.9 463 32.4
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 1.1e-39 169.5 795 27.0
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 5.1e-37 160.6 159 55.3
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 8.8e-37 159.8 827 26.0
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 1.3e-35 156.0 845 28.2
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 2.2e-35 155.2 840 25.0
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 3.7e-35 154.5 818 26.8
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 1.5e-33 149.1 853 26.6
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 2.0e-33 148.7 641 26.8
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 2.6e-33 148.3 503 29.8
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 1.1e-31 142.9 934 25.4
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.9e-31 142.1 574 28.4
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 3.2e-31 141.4 137 54.7
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 7.2e-31 140.2 134 56.7
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 3.6e-30 137.9 842 27.2
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 6.7e-29 133.7 166 44.6
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 2.9e-24 118.2 106 60.4
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 1.1e-23 116.3 169 44.4
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 2.3e-21 108.6 661 25.1
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 1.2e-20 106.3 888 24.3
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 3.3e-20 104.8 92 60.9
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 4.8e-19 100.9 149 42.3
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 2.5e-15 88.6 166 34.9
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 9.4e-15 86.7 429 24.0
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 1.3e-11 76.3 140 37.9
FAN12G4172 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.1e-10 71.2 124 38.7
Actinidia21335 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.3e-08 66.2 118 37.3
Dinv12077 Davidia involucrata HOM05D005434 ORTHO05D006412 3.8e-08 64.7 65 55.4
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 3.3e-07 61.6 102 40.2
FAN18G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.2e-07 61.2 133 33.1
AagrBONN_evm.TU.Sc2ySwM_344.3613 Anthoceros agrestis HOM05D022252 ORTHO05D006412 7.2e-07 60.5 165 26.7
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 1.2e-06 59.7 72 41.7
Sc17g0000060 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.2e-06 59.7 475 24.0
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 3.6e-06 58.2 167 25.7
vmacro08149 Vaccinium macrocarpon HOM05D005434 ORTHO05D006412 3.6e-06 58.2 230 27.0


User provided reference genes

Program Settings