Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 2.6e-261 904.8 453 100.0
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 1.4e-241 839.3 450 93.3
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 3.0e-241 838.2 451 93.3
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 1.1e-238 829.7 453 90.7
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 3.1e-222 775.0 451 88.2
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 1.6e-218 762.7 452 82.1
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.6e-218 762.7 452 83.4
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 4.7e-218 761.1 451 81.8
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 8.0e-218 760.4 449 82.6
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 5.7e-216 754.2 453 82.8
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 9.8e-216 753.4 453 82.6
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 1.3e-215 753.1 484 77.7
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.9e-215 751.1 453 82.6
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 4.9e-215 751.1 451 82.3
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 1.1e-214 750.0 454 81.7
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 1.8e-214 749.2 454 81.9
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 1.8e-214 749.2 444 82.9
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 5.4e-214 747.7 433 84.1
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.2e-213 746.5 419 86.2
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 1.6e-213 746.1 457 81.6
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 2.7e-213 745.3 419 86.6
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.3e-212 743.0 441 81.6
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 2.3e-212 742.3 451 81.4
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 6.6e-212 740.7 447 81.2
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.5e-211 739.6 405 87.9
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 2.5e-211 738.8 440 81.4
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 7.3e-211 737.3 431 83.3
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.6e-210 736.1 441 81.4
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 2.1e-210 735.7 447 81.0
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 3.6e-210 734.9 416 87.0
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 4.7e-210 734.6 453 80.8
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 8.0e-210 733.8 432 81.7
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 1.0e-209 733.4 424 84.0
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.4e-209 733.0 449 80.8
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.4e-209 733.0 416 85.1
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 1.8e-209 732.6 415 85.3
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 2.3e-209 732.3 416 85.1
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.0e-209 731.9 423 85.8
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 3.0e-209 731.9 426 83.8
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 5.2e-209 731.1 460 79.6
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 6.8e-209 730.7 406 86.5
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 8.9e-209 730.3 439 81.3
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.4e-208 728.0 442 81.4
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 4.4e-208 728.0 448 80.6
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 5.7e-208 727.6 451 79.2
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 5.7e-208 727.6 407 86.2
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 7.5e-208 727.2 451 80.0
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 7.5e-208 727.2 448 79.7
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 9.8e-208 726.9 458 79.3
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 2.9e-207 725.3 481 76.3
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 3.7e-207 724.9 441 80.5
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 6.4e-207 724.2 450 79.8
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 6.4e-207 724.2 451 79.8
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 8.3e-207 723.8 446 79.6
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 1.1e-206 723.4 403 86.6
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.1e-206 723.4 441 79.6
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 1.1e-206 723.4 427 82.4
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.8e-206 722.6 445 80.9
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 1.8e-206 722.6 451 79.8
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.8e-206 722.6 445 80.9
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.8e-206 722.6 445 80.9
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 1.8e-206 722.6 451 79.8
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 2.4e-206 722.2 450 79.3
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 3.2e-206 721.8 433 82.7
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 3.2e-206 721.8 463 77.8
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 3.2e-206 721.8 450 80.2
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 5.4e-206 721.1 450 77.8
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 5.4e-206 721.1 419 83.5
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 7.0e-206 720.7 455 79.1
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 7.0e-206 720.7 429 82.3
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 9.2e-206 720.3 449 78.6
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 2.0e-205 719.2 418 83.3
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 2.7e-205 718.8 451 79.6
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 2.7e-205 718.8 451 79.6
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.7e-205 718.8 454 78.4
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 4.6e-205 718.0 395 87.1
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 4.6e-205 718.0 467 77.1
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 5.9e-205 717.6 443 79.9
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.0e-204 716.8 446 78.5
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.7e-204 716.1 442 80.1
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.7e-204 716.1 421 82.4
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 2.3e-204 715.7 443 78.3
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 2.3e-204 715.7 442 80.1
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 8.6e-204 713.8 420 83.1
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 8.6e-204 713.8 454 77.5
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 4.3e-203 711.4 446 77.4
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.3e-203 710.7 420 82.9
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 4.7e-202 708.0 416 82.7
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.2e-202 707.6 446 79.1
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.0e-202 707.2 451 78.0
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 4.0e-201 704.9 480 75.0
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 7.5e-200 700.7 446 76.0
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 2.7e-197 692.2 442 77.8
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 2.3e-196 689.1 458 75.5
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 6.6e-196 687.6 421 77.9
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 1.1e-195 686.8 429 77.9
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.5e-195 686.4 444 75.2
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.5e-195 685.6 449 75.9
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 1.2e-194 683.3 434 77.9
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 4.7e-194 681.4 447 74.9
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 9.9e-192 673.7 432 76.2
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.6e-189 666.4 509 68.2
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 2.1e-189 666.0 454 75.3
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 4.7e-186 654.8 442 72.9
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.4e-182 642.5 459 71.2
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 2.4e-182 642.5 357 87.1
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 2.8e-178 629.0 391 75.7
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 2.4e-177 625.9 355 85.4
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 3.1e-177 625.5 449 70.8
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.7e-175 619.8 450 68.2
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 6.4e-175 617.8 444 68.5
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 7.8e-173 610.9 430 68.6
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 5.6e-163 578.2 499 60.9
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 2.0e-160 569.7 454 66.3
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.7e-159 566.6 420 67.9
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 1.2e-157 560.5 429 64.6
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 2.8e-154 549.3 302 88.7
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 6.9e-153 544.7 292 90.1
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 2.2e-151 539.7 396 65.4
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 6.5e-151 538.1 393 65.1
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.4e-145 520.4 394 62.2
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 6.9e-145 518.1 354 70.3
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.5e-142 509.6 454 61.5
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 7.9e-141 504.6 418 60.8
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 1.8e-137 493.4 331 71.6
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 2.9e-135 486.1 396 62.6
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 6.1e-133 478.4 422 61.1
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.6e-131 473.0 403 61.5
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 4.4e-131 472.2 403 61.8
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.3e-130 468.4 401 60.6
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 3.7e-114 416.0 420 53.1
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.7e-106 389.4 400 53.8
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 2.3e-103 380.2 235 82.6
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 3.8e-95 352.8 393 47.3
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 9.8e-91 338.2 425 42.8
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.6e-87 325.5 346 54.0
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 2.2e-82 310.5 422 40.0
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 2.1e-77 293.9 461 41.9
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.1e-73 278.9 351 47.0
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.0e-71 273.5 184 69.0
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.9e-46 191.0 105 85.7
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 1.1e-38 165.2 106 82.1
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 7.4e-38 162.5 280 40.0
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.1e-36 158.7 139 56.8
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 4.0e-36 156.8 282 39.0
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 5.8e-35 152.9 82 84.1
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 1.1e-30 138.7 80 82.5
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 7.4e-22 109.4 61 78.7
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 9.7e-22 109.0 65 83.1
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 1.1e-20 105.5 85 51.8
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.4e-17 95.1 50 90.0
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 9.1e-12 75.9 53 69.8
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 4.2e-09 67.0 43 74.4
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 2.1e-08 64.7 52 61.5
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 8.0e-08 62.8 57 54.4
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 1.8e-07 61.6 43 69.8
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 2.3e-07 61.2 50 60.0
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 6.7e-07 59.7 143 35.0
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 5.7e-06 56.6 44 54.5


User provided reference genes

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