Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 1.2e-46 189.5 97 100.0
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 9.3e-31 136.7 96 72.9
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 5.1e-29 131.0 97 70.1
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 6.7e-29 130.6 96 69.8
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 2.4e-26 122.1 96 66.7
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 9.9e-25 116.7 120 55.0
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 4.2e-23 111.3 94 57.4
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 9.3e-23 110.2 91 59.3
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 9.3e-23 110.2 100 58.0
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 1.2e-22 109.8 101 56.4
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 2.7e-22 108.6 94 61.7
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 4.6e-22 107.8 81 67.9
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.0e-21 106.7 96 55.2
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.1e-20 103.2 92 54.3
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.5e-20 102.8 82 58.5
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 2.5e-20 102.1 81 60.5
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 3.3e-20 101.7 92 55.4
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.3e-19 99.8 94 57.4
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 2.8e-19 98.6 96 56.2
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 3.7e-19 98.2 99 52.5
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 4.8e-19 97.8 98 55.1
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.1e-18 96.7 96 56.2
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.1e-18 96.7 95 51.6
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.4e-18 96.3 91 52.7
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.8e-18 95.9 76 63.2
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.4e-18 95.5 101 52.5
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.0e-18 94.7 100 49.0
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 5.3e-18 94.4 98 55.1
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.2e-17 93.2 93 52.7
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.2e-17 93.2 95 51.6
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.5e-17 92.8 81 59.3
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 2.0e-17 92.4 92 51.1
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 2.0e-17 92.4 102 49.0
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 2.6e-17 92.0 91 52.7
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 2.6e-17 92.0 98 51.0
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.4e-17 91.7 77 59.7
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 3.4e-17 91.7 101 49.5
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 5.8e-17 90.9 96 50.0
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 7.6e-17 90.5 102 48.0
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 7.6e-17 90.5 102 48.0
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 7.6e-17 90.5 100 48.0
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 7.6e-17 90.5 91 48.4
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.0e-16 90.1 92 47.8
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.7e-16 89.4 81 53.1
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.7e-16 89.4 103 49.5
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 1.7e-16 89.4 109 46.8
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.7e-16 89.4 81 56.8
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 3.8e-16 88.2 99 46.5
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 3.8e-16 88.2 99 48.5
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 4.9e-16 87.8 81 55.6
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 8.4e-16 87.0 92 48.9
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.1e-15 86.7 97 51.5
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 1.1e-15 86.7 81 49.4
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.9e-15 85.9 100 52.0
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.5e-15 85.5 97 50.5
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 2.5e-15 85.5 97 51.5
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.2e-15 84.7 95 52.6
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 4.2e-15 84.7 83 48.2
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 4.2e-15 84.7 83 48.2
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 4.2e-15 84.7 83 48.2
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 5.5e-15 84.3 95 43.2
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 7.1e-15 84.0 77 55.8
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.2e-14 83.2 96 44.8
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.6e-14 82.8 81 46.9
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.6e-14 82.8 92 42.4
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 2.1e-14 82.4 92 45.7
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 2.1e-14 82.4 92 42.4
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 2.7e-14 82.0 97 42.3
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 3.5e-14 81.6 101 42.6
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 3.5e-14 81.6 93 45.2
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 3.5e-14 81.6 86 48.8
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 3.5e-14 81.6 83 47.0
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 7.9e-14 80.5 98 45.9
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 7.9e-14 80.5 92 40.2
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.0e-13 80.1 100 44.0
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.8e-13 79.3 100 42.0
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 2.3e-13 79.0 98 44.9
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 2.3e-13 79.0 101 43.6
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 2.3e-13 79.0 81 46.9
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 3.9e-13 78.2 99 43.4
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 3.9e-13 78.2 99 43.4
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 5.1e-13 77.8 93 43.0
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 5.1e-13 77.8 101 43.6
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 5.1e-13 77.8 99 43.4
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 5.1e-13 77.8 101 43.6
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 5.1e-13 77.8 95 40.0
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 6.7e-13 77.4 75 48.0
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 6.7e-13 77.4 81 46.9
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 1.1e-12 76.6 82 46.3
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 1.1e-12 76.6 82 46.3
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.1e-12 76.6 96 45.8
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 1.1e-12 76.6 89 46.1
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 1.1e-12 76.6 75 56.0
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 1.5e-12 76.3 96 45.8
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 1.9e-12 75.9 102 43.1
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.9e-12 75.9 98 43.9
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 3.3e-12 75.1 85 49.4
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 4.3e-12 74.7 97 43.3
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 7.4e-12 73.9 80 42.5
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 7.4e-12 73.9 95 43.2
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 7.4e-12 73.9 97 43.3
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 7.4e-12 73.9 101 38.6
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 9.7e-12 73.6 81 44.4
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-11 73.2 97 40.2
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 1.3e-11 73.2 100 39.0
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 1.6e-11 72.8 81 45.7
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.8e-11 72.0 108 42.6
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 4.8e-11 71.2 98 43.9
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 6.3e-11 70.9 88 46.6
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 6.3e-11 70.9 80 38.8
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.1e-10 70.1 95 34.7
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 6.9e-10 67.4 86 43.0
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 6.9e-10 67.4 60 55.0
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 2.0e-09 65.9 76 40.8
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 4.5e-09 64.7 75 42.7
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 2.2e-08 62.4 101 36.6
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 5.0e-08 61.2 81 42.0
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.2e-07 58.5 82 35.4
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 4.2e-07 58.2 76 38.2
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 2.1e-06 55.8 82 32.9
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 3.6e-06 55.1 94 40.4
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 4.6e-06 54.7 35 68.6
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.6e-06 54.7 81 37.0


User provided reference genes

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