Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 0.0e+00 2160.2 1110 100.0
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 0.0e+00 1669.1 1110 77.0
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 0.0e+00 1588.5 1145 73.4
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1159.8 1125 55.5
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1159.4 1096 57.3
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1148.7 1129 55.5
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1130.5 1123 55.4
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1113.2 1119 54.2
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 1112.4 1073 55.5
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 0.0e+00 1108.6 1113 53.4
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1107.8 1115 54.0
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 1105.1 1115 54.2
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1104.4 1119 54.1
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 1102.0 1101 54.5
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 0.0e+00 1102.0 1119 53.5
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 0.0e+00 1099.3 1117 53.3
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1097.8 1124 54.4
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 0.0e+00 1097.0 1117 53.0
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1095.5 1106 53.9
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1094.7 1104 53.9
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1094.0 1104 54.1
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1088.2 1103 53.3
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 0.0e+00 1079.3 1111 53.0
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 7.6e-312 1074.7 1121 52.9
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 3.8e-311 1071.6 1107 52.9
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 9.1e-311 1070.5 1120 52.2
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 7.5e-310 1067.4 1122 52.4
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 8.3e-309 1063.9 1116 52.3
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 4.3e-305 1051.6 1112 51.6
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 9.5e-305 1050.4 1103 52.0
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.4e-303 1046.6 1105 52.5
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 6.8e-303 1044.3 1096 52.6
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 1.5e-302 1043.1 1105 51.9
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 4.9e-301 1038.1 1106 51.0
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 4.9e-301 1038.1 1094 51.8
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 1.4e-292 1010.0 1130 50.8
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 2.4e-292 1009.2 1117 50.2
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 1.2e-291 1006.9 1131 50.8
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 1.0e-290 1003.8 1106 48.4
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 8.1e-288 994.2 1107 51.0
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 1.4e-287 993.4 1120 47.8
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 2.0e-286 989.6 1048 51.5
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 1.0e-282 977.2 1122 48.5
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 6.8e-279 964.5 1123 49.6
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 8.9e-279 964.1 1097 48.7
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 7.6e-278 961.1 1096 48.6
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 1.7e-277 959.9 925 54.7
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 1.4e-276 956.8 1113 47.6
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 2.4e-276 956.1 1144 48.0
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 4.2e-276 955.3 1103 48.1
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 4.2e-276 955.3 1101 47.6
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 3.0e-274 949.1 1100 48.2
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 1.1e-273 947.2 1102 48.0
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 1.5e-273 946.8 1106 46.9
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 2.4e-271 939.5 1134 45.1
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 4.9e-269 931.8 1031 50.2
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 9.3e-268 927.5 1124 46.5
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 3.5e-267 925.6 1119 46.6
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 4.3e-265 918.7 1119 48.3
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 1.2e-262 910.6 1072 47.5
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 2.4e-260 902.9 966 53.2
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 6.7e-258 894.8 1107 46.9
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 1.6e-251 873.6 948 52.0
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.5e-251 872.5 874 53.4
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 6.9e-247 858.2 1060 46.8
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 5.9e-246 855.1 696 65.9
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 7.9e-243 844.7 825 56.0
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 7.9e-243 844.7 1122 44.8
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 6.7e-242 841.6 968 48.2
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 7.4e-241 838.2 1100 44.2
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 1.1e-233 814.3 1125 43.0
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 1.5e-233 813.9 769 55.9
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 3.7e-232 809.3 1115 43.4
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 2.0e-230 803.5 913 48.5
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 5.0e-229 798.9 1115 42.0
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 1.9e-228 797.0 1167 41.7
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.1e-225 787.7 947 47.6
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 3.3e-225 786.2 1129 41.3
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 6.3e-224 781.9 1103 41.3
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 8.8e-218 761.5 1103 41.3
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 1.5e-209 734.2 971 43.7
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 2.2e-192 677.2 444 80.9
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 5.0e-189 666.0 737 51.4
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 8.9e-186 655.2 751 47.4
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 1.6e-171 607.8 625 52.8
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.7e-160 571.2 809 43.3
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 4.9e-152 543.1 734 44.0
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 2.1e-150 537.7 1095 33.9
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 4.6e-150 536.6 932 38.6
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 1.8e-133 481.5 1161 30.3
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 2.9e-128 464.2 1358 27.6
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 3.9e-109 400.6 462 50.0
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.3e-88 332.4 396 49.0
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.8e-86 324.7 1246 26.3
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.5e-84 318.9 344 50.6
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 1.6e-81 308.9 339 51.6
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 2.0e-81 308.5 336 51.2
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 5.6e-79 300.4 344 48.3
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.2e-75 288.5 589 35.1
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 1.2e-70 272.7 314 47.1
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 1.4e-69 269.2 280 51.8
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.4e-68 264.2 299 47.2
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 4.6e-65 254.2 289 46.7
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 7.1e-58 230.3 365 40.3
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 1.8e-53 215.7 233 54.1
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 2.6e-52 211.8 192 55.7
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 1.2e-44 186.4 198 50.5
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 4.4e-44 184.5 261 42.5
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 2.2e-43 182.2 164 57.3
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 1.3e-40 172.9 173 49.1
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.6e-39 167.5 385 32.7
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 9.6e-39 166.8 171 50.9
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.8e-37 162.5 257 37.4
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 6.9e-37 160.6 320 34.7
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 1.3e-32 146.4 144 54.9
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 3.3e-31 141.7 483 27.5
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 9.3e-26 123.6 471 24.6
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 1.6e-22 112.8 121 53.7
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.6e-22 112.8 121 53.7
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 4.8e-22 111.3 108 56.5
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 2.2e-19 102.4 135 48.1
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 3.5e-17 95.1 137 39.4
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 4.3e-15 88.2 88 54.5
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.3e-14 86.7 135 42.2
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 8.2e-14 84.0 398 24.6
CBR_g41430 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-09 69.7 235 25.1
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 3.6e-09 68.6 165 31.5
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 6.1e-09 67.8 84 36.9
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 3.0e-08 65.5 61 49.2
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 1.5e-07 63.2 93 41.9
BolC4t25036H Brassica oleracea HOM05D005711 ORTHO05D040726 5.7e-07 61.2 108 38.0
Thecc.05G161000 Theobroma cacao HOM05D005711 ORTHO05D007125 2.8e-06 58.9 44 68.2


User provided reference genes

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