Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005809 Sechium edule HOM05D004074 ORTHO05D004717 2.9e-34 147.9 71 100.0
ClCG09G001480 Citrullus lanatus HOM05D004074 ORTHO05D004717 3.6e-32 141.0 71 91.5
Gohir.D12G001400 Gossypium hirsutum HOM05D004074 ORTHO05D004717 3.1e-31 137.9 69 91.3
MELO3C024297.2 Cucumis melo HOM05D004074 ORTHO05D004717 5.2e-31 137.1 71 87.3
Gohir.D11G059000 Gossypium hirsutum HOM05D004074 ORTHO05D004717 5.2e-31 137.1 69 89.9
Gorai.007G063900 Gossypium raimondii HOM05D004074 ORTHO05D004717 5.2e-31 137.1 69 89.9
Gorai.008G000800 Gossypium raimondii HOM05D004074 ORTHO05D004717 6.8e-31 136.7 69 89.9
AT1G51650 Arabidopsis thaliana HOM05D004074 ORTHO05D004717 8.9e-31 136.3 71 88.7
CsaV3_7G033840 Cucumis sativus L. HOM05D004074 ORTHO05D004717 8.9e-31 136.3 71 87.3
PGSC0003DMG400028842 Solanum tuberosum HOM05D004074 ORTHO05D004717 8.9e-31 136.3 69 88.4
Actinidia00635 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.2e-30 136.0 69 88.4
Actinidia25993 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.2e-30 136.0 69 88.4
Actinidia38792 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.2e-30 136.0 69 87.0
AL1G59560 Arabidopsis lyrata HOM05D004074 ORTHO05D004717 1.2e-30 136.0 69 89.9
CARHR041810 Cardamine hirsuta HOM05D004074 ORTHO05D004717 1.2e-30 136.0 71 88.7
CARHR097100 Cardamine hirsuta HOM05D004074 ORTHO05D004717 1.2e-30 136.0 71 88.7
Manes.05G195000 Manihot esculenta HOM05D004074 ORTHO05D004717 1.2e-30 136.0 71 87.3
Gohir.A11G055200 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.5e-30 135.6 69 88.4
Gohir.A12G001600 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.5e-30 135.6 69 88.4
Solyc06g063220.3 Solanum lycopersicum HOM05D004074 ORTHO05D004717 1.5e-30 135.6 69 87.0
Sopen06g022670 Solanum pennellii HOM05D004074 ORTHO05D004717 1.5e-30 135.6 69 87.0
Sopen12g024230 Solanum pennellii HOM05D004074 ORTHO05D004717 1.5e-30 135.6 69 87.0
TWI77G0047 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 2.0e-30 135.2 71 85.9
BcaB04g19151 Brassica carinata HOM05D004074 ORTHO05D004717 2.6e-30 134.8 71 87.3
BcaC01g03518 Brassica carinata HOM05D004074 ORTHO05D004717 2.6e-30 134.8 71 87.3
A08p02600 Brassica napus HOM05D004074 ORTHO05D004717 2.6e-30 134.8 68 91.2
BraA08t32299Z Brassica rapa HOM05D004074 ORTHO05D004717 2.6e-30 134.8 68 91.2
Solyc12g055760.2 Solanum lycopersicum HOM05D004074 ORTHO05D004717 3.4e-30 134.4 69 85.5
BcaB04g17185 Brassica carinata HOM05D004074 ORTHO05D004717 4.4e-30 134.0 68 89.7
Thhalv10011901m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 4.4e-30 134.0 68 91.2
Duzib147G0570 Durio zibethinus HOM05D004074 ORTHO05D004717 7.5e-30 133.3 69 85.5
HanXRQChr12g0359921 Helianthus annuus HOM05D004074 ORTHO05D004717 7.5e-30 133.3 69 84.1
Sp1g38290 Schrenkiella parvula HOM05D004074 ORTHO05D004717 7.5e-30 133.3 68 89.7
Actinidia31138 Actinidia chinensis HOM05D004074 ORTHO05D004717 9.8e-30 132.9 71 84.5
BcaB04g20604 Brassica carinata HOM05D004074 ORTHO05D004717 9.8e-30 132.9 71 85.9
BcaNung05296 Brassica carinata HOM05D004074 ORTHO05D004717 9.8e-30 132.9 71 85.9
Duzib264G1024 Durio zibethinus HOM05D004074 ORTHO05D004717 9.8e-30 132.9 69 85.5
FvH4_6g37330 Fragaria vesca HOM05D004074 ORTHO05D004717 9.8e-30 132.9 69 84.1
TWI53G1078 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 9.8e-30 132.9 71 83.1
Actinidia21867 Actinidia chinensis HOM05D004074 ORTHO05D004717 1.3e-29 132.5 69 82.6
A01p33680 Brassica napus HOM05D004074 ORTHO05D004717 1.3e-29 132.5 69 87.0
Haze_03743 Corylus avellana HOM05D004074 ORTHO05D004717 1.3e-29 132.5 69 88.4
A05p19470 Brassica napus HOM05D004074 ORTHO05D004717 1.7e-29 132.1 68 88.2
BraA05t20851Z Brassica rapa HOM05D004074 ORTHO05D004717 1.7e-29 132.1 68 88.2
HanXRQChr10g0311531 Helianthus annuus HOM05D004074 ORTHO05D004717 1.7e-29 132.1 69 82.6
Sp3g19200 Schrenkiella parvula HOM05D004074 ORTHO05D004717 1.7e-29 132.1 71 84.5
PGSC0003DMG402009187 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.7e-29 132.1 69 82.6
BolC1t04251H Brassica oleracea HOM05D004074 ORTHO05D004717 2.2e-29 131.7 71 84.5
ECA234G0987 Erigeron canadensis HOM05D004074 ORTHO05D004717 2.2e-29 131.7 69 85.5
BraA01t03480Z Brassica rapa HOM05D004074 ORTHO05D004717 2.9e-29 131.3 69 85.5
FAN02G0872 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.9e-29 131.3 69 82.6
FAN05G0051 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.9e-29 131.3 69 82.6
FAN09G3199 Fragaria x ananassa HOM05D004074 ORTHO05D004717 2.9e-29 131.3 69 82.6
CSS0037999 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 3.7e-29 131.0 69 82.6
CSS0039874 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 3.7e-29 131.0 69 82.6
C01p43050 Brassica napus HOM05D004074 ORTHO05D004717 4.9e-29 130.6 71 83.1
Duzib187G1118 Durio zibethinus HOM05D004074 ORTHO05D004717 4.9e-29 130.6 69 85.5
MD09G1158500 Malus domestica HOM05D004074 ORTHO05D004717 4.9e-29 130.6 71 78.9
CiPaw.01G088100 Carya illinoinensis HOM05D004074 ORTHO05D004717 6.4e-29 130.2 69 81.2
Cc01_g08930 Coffea canephora HOM05D004074 ORTHO05D004717 6.4e-29 130.2 69 82.6
Nitab4.5_0007548g0020 Nicotiana tabacum HOM05D004074 ORTHO05D004717 6.4e-29 130.2 69 81.2
BcaB02g11264 Brassica carinata HOM05D004074 ORTHO05D004717 8.3e-29 129.8 68 86.8
Phvul.008G255900 Phaseolus vulgaris HOM05D004074 ORTHO05D004717 8.3e-29 129.8 69 82.6
Dinv20359 Davidia involucrata HOM05D004074 ORTHO05D004717 1.1e-28 129.4 71 83.1
PGSC0003DMG400026508 Solanum tuberosum HOM05D004074 ORTHO05D004717 1.1e-28 129.4 69 82.6
Hma1.2p1_0039F.1_g024790 Hydrangea macrophylla HOM05D004074 ORTHO05D004717 1.4e-28 129.0 71 83.1
Nn6g31693 Nelumbo nucifera HOM05D004074 ORTHO05D004717 1.4e-28 129.0 67 83.6
Nn8g40291 Nelumbo nucifera HOM05D004074 ORTHO05D004717 1.4e-28 129.0 67 83.6
TPR.G2285 Trifolium pratense HOM05D004074 ORTHO05D004717 1.9e-28 128.6 69 82.6
Prupe.3G167500 Prunus persica HOM05D004074 ORTHO05D004717 2.4e-28 128.3 71 77.5
RcHm_v2.0_Chr2g0150171 Rosa chinensis HOM05D004074 ORTHO05D004717 3.2e-28 127.9 69 81.2
BcaC08g43926 Brassica carinata HOM05D004074 ORTHO05D004717 4.1e-28 127.5 68 85.3
C06p13180 Brassica napus HOM05D004074 ORTHO05D004717 4.1e-28 127.5 68 85.3
BolC6t36474H Brassica oleracea HOM05D004074 ORTHO05D004717 4.1e-28 127.5 68 85.3
CANSAT01G1956 Cannabis sativa HOM05D004074 ORTHO05D004717 4.1e-28 127.5 69 82.6
CDE02G0689 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 4.1e-28 127.5 69 79.7
Nn5g30428 Nelumbo nucifera HOM05D004074 ORTHO05D004717 4.1e-28 127.5 68 80.9
Psat1g059640 Pisum sativum HOM05D004074 ORTHO05D004717 4.1e-28 127.5 69 81.2
PGR102G2231 Punica granatum HOM05D004074 ORTHO05D004717 4.1e-28 127.5 69 81.2
unitig_748.g7476 Utricularia gibba HOM05D004074 ORTHO05D004717 4.1e-28 127.5 69 81.2
Carub.0001s4049 Capsella rubella HOM05D004074 ORTHO05D004717 5.4e-28 127.1 68 85.3
Hund11291 Selenicereus undatus HOM05D004074 ORTHO05D004717 5.4e-28 127.1 69 84.1
vmacro18761 Vaccinium macrocarpon HOM05D004074 ORTHO05D004717 7.0e-28 126.7 63 88.9
Aa31LG10G3130 Aethionema arabicum HOM05D004074 ORTHO05D004717 9.2e-28 126.3 69 84.1
CDE05G2863 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 9.2e-28 126.3 69 78.3
unitig_32.g11555 Utricularia gibba HOM05D004074 ORTHO05D004717 1.2e-27 125.9 69 79.7
Glyma.07G003700 Glycine max HOM05D004074 ORTHO05D004717 1.6e-27 125.6 69 79.7
Lsat_1_v5_gn_4_88780 Lactuca sativa HOM05D004074 ORTHO05D004717 2.0e-27 125.2 68 80.9
THA.LOC104821596 Tarenaya hassleriana HOM05D004074 ORTHO05D004717 2.7e-27 124.8 69 79.7
Dinv37799 Davidia involucrata HOM05D004074 ORTHO05D004717 3.5e-27 124.4 67 82.1
Migut.I01175 Erythranthe guttata HOM05D004074 ORTHO05D004717 3.5e-27 124.4 69 79.7
Cpa.g.sc1009.1 Carica papaya HOM05D004074 ORTHO05D004717 4.6e-27 124.0 61 90.2
Ciclev10026787m.g Citrus clementina HOM05D004074 ORTHO05D004717 4.6e-27 124.0 62 90.3
Thhalv10021996m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 4.6e-27 124.0 61 91.8
Medtr5g040610 Medicago truncatula HOM05D004074 ORTHO05D004717 4.6e-27 124.0 69 78.3
Psat7g263760 Pisum sativum HOM05D004074 ORTHO05D004717 4.6e-27 124.0 68 79.4
BolC3t17439H Brassica oleracea HOM05D000606 ORTHO05D001265 7.8e-27 123.2 61 91.8
BraA03t13364Z Brassica rapa HOM05D000606 ORTHO05D001265 7.8e-27 123.2 61 91.8
Hund14448 Selenicereus undatus HOM05D004074 ORTHO05D004717 7.8e-27 123.2 67 82.1
Rhsim08G0247900 Rhododendron simsii HOM05D004074 ORTHO05D004717 1.0e-26 122.9 61 88.5
COL.COLO4_13992 Corchorus olitorius HOM05D004074 ORTHO05D004717 2.3e-26 121.7 62 87.1
Potri.010G250000 Populus trichocarpa HOM05D004074 ORTHO05D004717 2.3e-26 121.7 67 80.6
FAN14G4331 Fragaria x ananassa HOM05D004074 ORTHO05D004717 3.0e-26 121.3 61 86.9
Nitab4.5_0002885g0120 Nicotiana tabacum HOM05D004074 ORTHO05D004717 3.0e-26 121.3 64 82.8
Potri.008G008900 Populus trichocarpa HOM05D004074 ORTHO05D004717 3.0e-26 121.3 67 80.6
Thecc.01G124200 Theobroma cacao HOM05D004074 ORTHO05D004717 3.0e-26 121.3 61 88.5
Aqoxy7G03184 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 3.9e-26 120.9 68 79.4
Rhsim06G0076700 Rhododendron simsii HOM05D004074 ORTHO05D004717 3.9e-26 120.9 63 84.1
Glyma.08G222900 Glycine max HOM05D004074 ORTHO05D004717 6.6e-26 120.2 76 72.4
Lj3g0011227 Lotus japonicus HOM05D004074 ORTHO05D004717 8.6e-26 119.8 61 85.2
Peaxi162Scf00038g02442 Petunia axillaris HOM05D004074 ORTHO05D004717 8.6e-26 119.8 62 83.9
CAN.G1073.1 Capsicum annuum HOM05D004074 ORTHO05D004717 1.1e-25 119.4 62 83.9
Nitab4.5_0008628g0040 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.1e-25 119.4 64 78.1
Nitab4.5_0001691g0090 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.5e-25 119.0 61 85.2
Zm00001eb161770 Zea mays HOM05D004074 ORTHO05D004717 1.9e-25 118.6 68 79.4
Aa31LG8G7900 Aethionema arabicum HOM05D004074 ORTHO05D004717 2.5e-25 118.2 65 81.5
Lalb_Chr25g0278611 Lupinus albus HOM05D004074 ORTHO05D004717 2.5e-25 118.2 67 74.6
PSO170G4934 Papaver somniferum HOM05D004074 ORTHO05D004717 2.5e-25 118.2 70 75.7
PSO339G3796 Papaver somniferum HOM05D004074 ORTHO05D004717 2.5e-25 118.2 70 75.7
BolC8t49078H Brassica oleracea HOM05D004074 ORTHO05D004717 3.3e-25 117.9 61 86.9
Nitab4.5_0002661g0050 Nicotiana tabacum HOM05D004074 ORTHO05D004717 3.3e-25 117.9 61 82.0
VMungo0647G0339 Vigna mungo HOM05D001270 ORTHO05D001099 3.3e-25 117.9 62 83.9
CAN.G790.25 Capsicum annuum HOM05D004074 ORTHO05D004717 4.3e-25 117.5 62 82.3
Zm00001eb357940 Zea mays HOM05D004074 ORTHO05D004717 4.3e-25 117.5 68 77.9
Nitab4.5_0000357g0290 Nicotiana tabacum HOM05D004074 ORTHO05D004717 5.6e-25 117.1 61 82.0
Oeu040350.2 Olea europaea HOM05D004074 ORTHO05D004717 1.2e-24 115.9 63 77.8
Sabra10G0194600 Salix brachista HOM05D004074 ORTHO05D004717 1.2e-24 115.9 61 85.2
BcaC09g49057 Brassica carinata HOM05D004074 ORTHO05D004717 1.6e-24 115.5 61 83.6
EL10Ac5g12205 Beta vulgaris HOM05D004074 ORTHO05D004717 2.8e-24 114.8 61 85.2
DCAR_007668 Daucus carota HOM05D004074 ORTHO05D004717 3.6e-24 114.4 64 78.1
QL05p083316 Quercus lobata HOM05D004074 ORTHO05D004717 3.6e-24 114.4 64 79.7
Aqoxy5G02869 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 4.7e-24 114.0 63 79.4
arahy.Tifrunner.gnm1.ann1.9ZAP4M Arachis hypogaea HOM05D004074 ORTHO05D004717 4.7e-24 114.0 66 75.8
BcaC03g13642 Brassica carinata HOM05D000239 ORTHO05D004717 8.0e-24 113.2 66 78.8
C02p10320 Brassica napus HOM05D004074 ORTHO05D004717 1.1e-23 112.8 65 80.0
Sabra08G0005100 Salix brachista HOM05D004074 ORTHO05D004717 1.1e-23 112.8 63 79.4
TAR626G1506 Trochodendron aralioides HOM05D004074 ORTHO05D004717 1.1e-23 112.8 69 73.9
Os08g0250200 Oryza sativa ssp. japonica HOM05D004074 ORTHO05D004717 1.4e-23 112.5 65 76.9
Eucgr.F04009 Eucalyptus grandis HOM05D004074 ORTHO05D004717 1.8e-23 112.1 66 75.8
Ah.07g199420 Amaranthus hybridus HOM05D004074 ORTHO05D004717 2.3e-23 111.7 59 81.4
SGA_v2.0_scaffold122G33290 Striga asiatica HOM05D004074 ORTHO05D004717 2.3e-23 111.7 60 78.3
ATR0580G305 Amborella trichopoda HOM05D004074 ORTHO05D004717 4.0e-23 110.9 64 73.4
AUR62018789 Chenopodium quinoa HOM05D004074 ORTHO05D004717 6.8e-23 110.2 69 76.8
SHI21232 Sapria himalayana HOM05D004074 ORTHO05D004717 8.9e-23 109.8 69 71.0
BcaC08g44915 Brassica carinata HOM05D004074 ORTHO05D004717 1.2e-22 109.4 62 82.3
C06p25410 Brassica napus HOM05D004074 ORTHO05D004717 1.2e-22 109.4 62 82.3
BolC6t37702H Brassica oleracea HOM05D004074 ORTHO05D004717 1.2e-22 109.4 62 82.3
MBI04_g18036_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 1.2e-22 109.4 60 76.7
HPP92_021730 Vanilla planifolia HOM05D004074 ORTHO05D004717 1.5e-22 109.0 60 78.3
QL05p083267 Quercus lobata HOM05D004074 ORTHO05D004717 5.8e-22 107.1 62 71.0
TAR383G0992 Trochodendron aralioides HOM05D004074 ORTHO05D004717 7.5e-22 106.7 59 78.0
SGA_v2.0_scaffold71G24013 Striga asiatica HOM05D001270 ORTHO05D001099 4.9e-21 104.0 60 73.3
GSVIVG01037184001 Vitis vinifera HOM05D004074 ORTHO05D004717 1.1e-20 102.8 58 81.0
SEGI_28642 Sequoiadendron giganteum HOM05D004074 ORTHO05D004717 1.4e-20 102.4 64 62.5
AagrBONN_evm.TU.Sc2ySwM_117.3571 Anthoceros agrestis HOM05D004074 ORTHO05D004717 1.0e-18 96.3 65 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1495 Anthoceros agrestis HOM05D004074 ORTHO05D004717 5.1e-18 94.0 65 58.5
Thhalv10022333m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 5.1e-18 94.0 67 68.7
GSVIVG01037963001 Vitis vinifera HOM05D004074 ORTHO05D004717 1.9e-17 92.0 46 89.1
HPP92_021648 Vanilla planifolia HOM05D004074 ORTHO05D004717 4.3e-17 90.9 59 69.5
MBI14_g24286_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 3.6e-16 87.8 47 78.7
SalBow6G5392 Salvia bowleyana HOM05D004074 ORTHO05D004717 4.7e-16 87.4 48 72.9
C02p45000 Brassica napus HOM05D000128 ORTHO05D000059 6.2e-16 87.0 45 88.9
Lsat_1_v5_gn_5_137500 Lactuca sativa HOM05D001270 ORTHO05D001099 6.2e-16 87.0 57 70.2
Pp3c1_12120 Physcomitrium patens HOM05D004074 ORTHO05D004717 5.2e-15 84.0 62 54.8
Pp3c2_24870 Physcomitrium patens HOM05D004074 ORTHO05D004717 5.2e-15 84.0 62 54.8
Mapoly0001s0230 Marchantia polymorpha HOM05D004074 ORTHO05D004717 2.0e-14 82.0 67 50.7
SMO351G0623 Selaginella moellendorffii HOM05D004074 ORTHO05D004717 2.0e-14 82.0 57 57.9
Zm00001eb394860 Zea mays HOM05D004074 ORTHO05D004717 1.1e-12 76.3 53 64.2
MCO11G253 Micromonas commoda HOM05D004074 ORTHO05D004717 1.9e-12 75.5 67 50.7
Medtr4g005960 Medicago truncatula HOM05D004074 ORTHO05D004717 3.2e-12 74.7 63 54.0
Pp3c1_10140 Physcomitrium patens HOM05D004074 ORTHO05D004717 1.2e-11 72.8 52 61.5
PRCOL_00000946 Prasinoderma coloniale HOM05D004074 ORTHO05D004717 1.6e-11 72.4 55 54.5
PSO455G0136 Papaver somniferum HOM05D004074 ORTHO05D004717 7.8e-11 70.1 60 58.3
Cre10.g420700 Chlamydomonas reinhardtii HOM05D004074 ORTHO05D004717 2.1e-08 62.0 56 46.4
QL05p083294 Quercus lobata HOM05D004074 ORTHO05D004717 4.4e-06 54.3 52 53.8


User provided reference genes

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