Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005803 Sechium edule HOM05D000003 ORTHO05D000167 1.0e-51 206.5 105 100.0
Sed0028005 Sechium edule HOM05D000003 ORTHO05D000167 1.5e-21 106.3 96 54.2
Sed0026194 Sechium edule HOM05D000003 ORTHO05D000167 2.1e-20 102.4 95 52.6
Sed0025544 Sechium edule HOM05D000003 ORTHO05D000167 9.8e-18 93.6 93 43.0
Sed0005170 Sechium edule HOM05D000003 ORTHO05D000167 1.7e-17 92.8 95 48.4
Sed0007870 Sechium edule HOM05D000003 ORTHO05D000167 9.1e-16 87.0 97 42.3
Sed0017704 Sechium edule HOM05D000003 ORTHO05D000167 9.1e-16 87.0 88 44.3
Sed0008336 Sechium edule HOM05D000003 ORTHO05D000004 2.9e-14 82.0 68 58.8
Sed0011524 Sechium edule HOM05D000003 ORTHO05D000167 1.1e-13 80.1 96 46.9
Sed0016476 Sechium edule HOM05D024375 ORTHO05D000167 1.1e-13 80.1 87 48.3
Sed0016145 Sechium edule HOM05D000003 ORTHO05D000004 2.5e-13 79.0 96 42.7
Sed0021352 Sechium edule HOM05D000003 ORTHO05D000167 3.6e-12 75.1 95 44.2
Duzib170G1100 Durio zibethinus HOM05D000003 ORTHO05D000167 1.8e-11 72.8 98 34.7
Sed0009227 Sechium edule HOM05D000003 ORTHO05D000167 3.0e-11 72.0 80 38.8
Sed0009635 Sechium edule HOM05D015284 ORTHO05D000167 1.2e-10 70.1 58 62.1
Sed0015376 Sechium edule HOM05D000003 ORTHO05D000167 1.5e-10 69.7 95 42.1
Sed0001376 Sechium edule HOM05D000003 ORTHO05D000167 3.4e-10 68.6 87 43.7
Sed0001005 Sechium edule HOM05D015284 ORTHO05D000167 7.5e-10 67.4 62 46.8
Sed0019207 Sechium edule HOM05D000003 ORTHO05D000167 7.5e-10 67.4 91 41.8
Sed0025910 Sechium edule HOM05D000003 ORTHO05D000167 7.5e-10 67.4 103 37.9
Ciclev10027161m.g Citrus clementina HOM05D000003 ORTHO05D000167 9.8e-10 67.0 94 37.2
EL10Ac8g18252 Beta vulgaris HOM05D000003 ORTHO05D000004 1.7e-09 66.2 101 31.7
Sed0010381 Sechium edule HOM05D000003 ORTHO05D000004 1.7e-09 66.2 62 51.6
Sed0002454 Sechium edule HOM05D000003 ORTHO05D000167 2.2e-09 65.9 70 50.0
Sed0005745 Sechium edule HOM05D000003 ORTHO05D000167 2.2e-09 65.9 67 50.7
Sed0027684 Sechium edule HOM05D000003 ORTHO05D000167 3.7e-09 65.1 70 48.6
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 6.3e-09 64.3 101 32.7
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 8.3e-09 63.9 101 32.7
Sed0023448 Sechium edule HOM05D015284 ORTHO05D000167 1.1e-08 63.5 92 39.1
FAN09G3474 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.8e-08 62.8 101 30.7
Sed0023716 Sechium edule HOM05D000003 ORTHO05D000167 2.4e-08 62.4 91 39.6
RcHm_v2.0_Chr4g0402201 Rosa chinensis HOM05D000003 ORTHO05D000004 3.1e-08 62.0 93 37.6
Prupe.3G133900 Prunus persica HOM05D000003 ORTHO05D000167 5.4e-08 61.2 84 36.9
CANSAT78G2022 Cannabis sativa HOM05D000003 ORTHO05D000004 7.0e-08 60.8 95 36.8
Dinv14511 Davidia involucrata HOM05D002972 ORTHO05D002272 7.0e-08 60.8 94 33.0
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 7.0e-08 60.8 101 31.7
Prupe.3G063400 Prunus persica HOM05D000003 ORTHO05D000167 7.0e-08 60.8 87 41.4
QL02p097725 Quercus lobata HOM05D000003 ORTHO05D000004 9.2e-08 60.5 89 41.6
Sed0008661 Sechium edule HOM05D000003 ORTHO05D000167 9.2e-08 60.5 81 40.7
Atru.chr2.176 Acer truncatum HOM05D000003 ORTHO05D000167 1.2e-07 60.1 87 35.6
CANSAT78G1794 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-07 60.1 98 37.8
QL12p001891 Quercus lobata HOM05D000003 ORTHO05D000167 1.2e-07 60.1 95 35.8
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 1.2e-07 60.1 95 34.7
Sed0010684 Sechium edule HOM05D000003 ORTHO05D000167 1.2e-07 60.1 69 46.4
Atru.chr10.535 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-07 59.7 96 31.2
CANSAT01G3112 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-07 59.7 95 37.9
CANSAT21G2622 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-07 59.7 89 37.1
Duzib205G1150 Durio zibethinus HOM05D000003 ORTHO05D000167 1.6e-07 59.7 101 34.7
Prupe.7G076800 Prunus persica HOM05D000003 ORTHO05D000167 1.6e-07 59.7 85 41.2
Atru.chr4.1218 Acer truncatum HOM05D000003 ORTHO05D000167 2.0e-07 59.3 88 39.8
Atru.chr2.2135 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-07 58.9 95 36.8
Ciclev10013872m.g Citrus clementina HOM05D000003 ORTHO05D000167 2.7e-07 58.9 100 34.0
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 2.7e-07 58.9 88 38.6
Atru.chr9.679 Acer truncatum HOM05D000003 ORTHO05D000167 3.5e-07 58.5 90 34.4
Ciclev10007098m.g Citrus clementina HOM05D000003 ORTHO05D000167 3.5e-07 58.5 84 41.7
TWI74G1532 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.5e-07 58.5 90 36.7
Atru.chr10.298 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-07 58.2 89 38.2
Atru.chr7.130 Acer truncatum HOM05D000003 ORTHO05D000126 4.5e-07 58.2 95 33.7
Duzib084G0587 Durio zibethinus HOM05D000003 ORTHO05D000167 4.5e-07 58.2 95 34.7
FvH4_6g47542 Fragaria vesca HOM05D000003 ORTHO05D000167 4.5e-07 58.2 85 36.5
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 5.9e-07 57.8 90 33.3
CANSAT21G1802 Cannabis sativa HOM05D000003 ORTHO05D000167 5.9e-07 57.8 89 36.0
Duzib160G0264 Durio zibethinus HOM05D000003 ORTHO05D000167 5.9e-07 57.8 91 36.3
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 5.9e-07 57.8 94 35.1
Sed0017531 Sechium edule HOM05D000003 ORTHO05D000126 5.9e-07 57.8 91 36.3
Atru.chr10.544 Acer truncatum HOM05D000003 ORTHO05D000004 7.7e-07 57.4 96 30.2
Atru.chr9.146 Acer truncatum HOM05D000003 ORTHO05D000167 7.7e-07 57.4 87 36.8
MBI03_g12752_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.7e-07 57.4 86 37.2
QL11p050659 Quercus lobata HOM05D002097 ORTHO05D002248 7.7e-07 57.4 96 28.1
TAR256G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000167 7.7e-07 57.4 84 31.0
TAR331G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000167 7.7e-07 57.4 84 31.0
CANSAT25G1614 Cannabis sativa HOM05D000003 ORTHO05D000167 1.0e-06 57.0 96 32.3
MBI11_g05090_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.0e-06 57.0 78 39.7
QL12p021712 Quercus lobata HOM05D000003 ORTHO05D000167 1.0e-06 57.0 95 31.6
Sed0009616 Sechium edule HOM05D015284 ORTHO05D000167 1.0e-06 57.0 91 36.3
CANSAT01G2509 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-06 56.6 88 38.6
Dinv21289 Davidia involucrata HOM05D000079 ORTHO05D000211 1.3e-06 56.6 84 38.1
Aqoxy1G03455 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.7e-06 56.2 77 36.4
Aqoxy5G00081 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 1.7e-06 56.2 77 36.4
CANSAT01G1430 Cannabis sativa HOM05D000003 ORTHO05D000167 1.7e-06 56.2 95 34.7
CANSAT25G3224 Cannabis sativa HOM05D000003 ORTHO05D000167 1.7e-06 56.2 89 38.2
CANSAT64G2222 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-06 56.2 90 36.7
FAN19G2165 Fragaria x ananassa HOM05D007821 ORTHO05D009897 1.7e-06 56.2 103 32.0
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 1.7e-06 56.2 95 32.6
Atru.chr2.570 Acer truncatum HOM05D000003 ORTHO05D000167 2.3e-06 55.8 89 37.1
Atru.chr8.838 Acer truncatum HOM05D000003 ORTHO05D000167 2.3e-06 55.8 90 31.1
CANSAT11G2485 Cannabis sativa HOM05D000003 ORTHO05D000167 2.3e-06 55.8 87 36.8
Dinv08495 Davidia involucrata HOM05D000003 ORTHO05D000167 2.3e-06 55.8 86 38.4
MBI03_g01396_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.3e-06 55.8 86 37.2
QL05p054879 Quercus lobata HOM05D000003 ORTHO05D000126 2.3e-06 55.8 101 35.6
QL07p030179 Quercus lobata HOM05D000003 ORTHO05D000167 2.3e-06 55.8 103 35.9
Atru.chr2.2391 Acer truncatum HOM05D000003 ORTHO05D000167 2.9e-06 55.5 87 39.1
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-06 55.5 66 42.4
EL10Ac9g22665 Beta vulgaris HOM05D000003 ORTHO05D000167 2.9e-06 55.5 97 33.0
CANSAT35G1604 Cannabis sativa HOM05D000003 ORTHO05D000004 2.9e-06 55.5 97 32.0
CANSAT80G1791 Cannabis sativa HOM05D000003 ORTHO05D000004 2.9e-06 55.5 103 32.0
FvH4_4g16971 Fragaria vesca HOM05D000003 ORTHO05D000004 2.9e-06 55.5 102 29.4
FAN05G1347 Fragaria x ananassa HOM05D015760 ORTHO05D020672 2.9e-06 55.5 103 34.0
Peaxi162Scf00100g00073 Petunia axillaris HOM05D008381 ORTHO05D004636 2.9e-06 55.5 94 34.0
Sed0004185 Sechium edule HOM05D000003 ORTHO05D000004 2.9e-06 55.5 65 44.6
Sed0006726 Sechium edule HOM05D000003 ORTHO05D000167 2.9e-06 55.5 91 35.2
EL10Ac4g08331 Beta vulgaris HOM05D008685 ORTHO05D000022 3.8e-06 55.1 99 38.4
CANSAT64G1526 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-06 55.1 97 36.1
CANSAT64G2879 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-06 55.1 95 34.7
CANSAT80G2437 Cannabis sativa HOM05D000003 ORTHO05D000167 3.8e-06 55.1 85 37.6
Prupe.3G283300 Prunus persica HOM05D000003 ORTHO05D000167 3.8e-06 55.1 85 37.6
Atru.chr10.114 Acer truncatum HOM05D000003 ORTHO05D000167 5.0e-06 54.7 88 37.5
Atru.chr10.97 Acer truncatum HOM05D000003 ORTHO05D000167 5.0e-06 54.7 88 37.5
Atru.chr12.998 Acer truncatum HOM05D000003 ORTHO05D000167 5.0e-06 54.7 91 36.3
Atru.chr3.896 Acer truncatum HOM05D000039 ORTHO05D001943 5.0e-06 54.7 96 36.5
Atru.chr7.1272 Acer truncatum HOM05D000003 ORTHO05D000167 5.0e-06 54.7 68 44.1
Atru.chr8.1648 Acer truncatum HOM05D000003 ORTHO05D000167 5.0e-06 54.7 87 34.5
CSS0014223 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 5.0e-06 54.7 87 36.8
CSS0046159 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 5.0e-06 54.7 87 36.8
CANSAT21G0284 Cannabis sativa HOM05D000003 ORTHO05D000167 5.0e-06 54.7 88 38.6
CANSAT21G1817 Cannabis sativa HOM05D000003 ORTHO05D000167 5.0e-06 54.7 80 41.2
CANSAT35G0331 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-06 54.7 90 33.3
CANSAT35G0664 Cannabis sativa HOM05D000003 ORTHO05D000167 5.0e-06 54.7 95 35.8
CANSAT64G1939 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-06 54.7 90 33.3
CANSAT80G1428 Cannabis sativa HOM05D000003 ORTHO05D000167 5.0e-06 54.7 99 31.3
COL.COLO4_16656 Corchorus olitorius HOM05D013144 ORTHO05D009449 5.0e-06 54.7 88 38.6
QL08p050440 Quercus lobata HOM05D000003 ORTHO05D000167 5.0e-06 54.7 91 39.6
Sopen07g021380 Solanum pennellii HOM05D000155 ORTHO05D000034 5.0e-06 54.7 88 34.1
Atru.chr5.1534 Acer truncatum HOM05D000003 ORTHO05D000167 6.6e-06 54.3 80 35.0
CANSAT01G2496 Cannabis sativa HOM05D000003 ORTHO05D000167 6.6e-06 54.3 88 36.4
CANSAT56G0342 Cannabis sativa HOM05D000003 ORTHO05D000167 6.6e-06 54.3 87 33.3
CANSAT78G2124 Cannabis sativa HOM05D000003 ORTHO05D000004 6.6e-06 54.3 84 33.3
CiPaw.16G012000 Carya illinoinensis HOM05D000003 ORTHO05D000006 6.6e-06 54.3 93 31.2
FvH4_6g36441 Fragaria vesca HOM05D000003 ORTHO05D019158 6.6e-06 54.3 96 35.4
Prupe.7G049300 Prunus persica HOM05D000003 ORTHO05D000004 6.6e-06 54.3 89 34.8
Sopen01g005170 Solanum pennellii HOM05D000155 ORTHO05D000022 6.6e-06 54.3 88 34.1
Sopen02g028750 Solanum pennellii HOM05D000155 ORTHO05D000022 6.6e-06 54.3 88 34.1
Atru.chr1.2640 Acer truncatum HOM05D000003 ORTHO05D000126 8.6e-06 53.9 90 32.2
Atru.chr3.587 Acer truncatum HOM05D000003 ORTHO05D017149 8.6e-06 53.9 93 36.6
CANSAT21G2382 Cannabis sativa HOM05D000003 ORTHO05D000167 8.6e-06 53.9 84 36.9
AUR62008577 Chenopodium quinoa HOM05D000344 ORTHO05D005296 8.6e-06 53.9 87 33.3
QL01p014938 Quercus lobata HOM05D000003 ORTHO05D000167 8.6e-06 53.9 105 30.5
QL05p012339 Quercus lobata HOM05D000003 ORTHO05D000167 8.6e-06 53.9 95 33.7
QL10p042493 Quercus lobata HOM05D000003 ORTHO05D000167 8.6e-06 53.9 87 33.3
RcHm_v2.0_Chr2g0142781 Rosa chinensis HOM05D008833 ORTHO05D010662 8.6e-06 53.9 85 35.3
RcHm_v2.0_Chr5g0032971 Rosa chinensis HOM05D013134 ORTHO05D035491 8.6e-06 53.9 76 38.2
Sed0005147 Sechium edule HOM05D015284 ORTHO05D000167 8.6e-06 53.9 51 49.0
Thecc.09G263100 Theobroma cacao HOM05D000003 ORTHO05D002259 8.6e-06 53.9 88 39.8


User provided reference genes

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