Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 6.1e-71 270.8 144 100.0
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 2.5e-40 169.1 156 64.1
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 1.1e-35 153.7 156 59.0
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 4.6e-34 148.3 152 57.2
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 1.7e-33 146.4 153 60.8
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 2.1e-26 122.9 120 60.8
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 3.5e-26 122.1 120 60.8
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 6.0e-26 121.3 120 60.0
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 3.6e-23 112.1 139 51.8
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 8.1e-23 110.9 155 48.4
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 1.4e-22 110.2 116 56.9
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 1.8e-22 109.8 124 53.2
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 4.0e-22 108.6 149 47.7
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 9.0e-22 107.5 131 51.9
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 2.6e-21 105.9 148 45.3
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 4.4e-21 105.1 151 47.0
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 4.4e-21 105.1 145 49.7
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 4.4e-21 105.1 145 49.7
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 7.6e-21 104.4 149 44.3
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.2e-20 102.8 138 50.7
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 2.9e-20 102.4 151 43.7
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 3.8e-20 102.1 151 43.0
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 3.8e-20 102.1 154 46.1
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 4.9e-20 101.7 152 47.4
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 4.9e-20 101.7 161 43.5
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.9e-20 101.7 147 47.6
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 4.9e-20 101.7 142 49.3
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 6.4e-20 101.3 151 43.7
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 6.4e-20 101.3 151 43.7
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 6.4e-20 101.3 151 43.7
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.1e-19 100.5 125 47.2
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.4e-19 100.1 158 43.7
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.9e-19 99.8 173 43.4
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.9e-19 99.8 163 42.3
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 3.2e-19 99.0 156 43.6
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 4.2e-19 98.6 154 44.8
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 4.2e-19 98.6 154 44.8
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 5.4e-19 98.2 159 40.3
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 5.4e-19 98.2 144 47.2
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 5.4e-19 98.2 130 49.2
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 7.1e-19 97.8 141 46.8
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 7.1e-19 97.8 153 43.8
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 9.3e-19 97.4 163 44.2
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 9.3e-19 97.4 151 45.7
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.6e-18 96.7 155 46.5
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.6e-18 96.7 108 53.7
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.1e-18 96.3 146 42.5
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.1e-18 96.3 127 49.6
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 2.7e-18 95.9 129 48.1
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 2.7e-18 95.9 129 48.1
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 6.0e-18 94.7 151 43.7
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 6.0e-18 94.7 154 40.3
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 7.8e-18 94.4 133 45.9
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 1.3e-17 93.6 174 39.1
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 1.3e-17 93.6 174 39.1
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 1.3e-17 93.6 139 47.5
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 1.3e-17 93.6 153 44.4
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 1.7e-17 93.2 168 41.1
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 1.7e-17 93.2 153 44.4
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 1.7e-17 93.2 129 51.2
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 2.3e-17 92.8 162 42.0
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.3e-17 92.8 125 49.6
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 2.3e-17 92.8 126 47.6
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 2.3e-17 92.8 168 45.2
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 2.3e-17 92.8 144 45.1
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 3.0e-17 92.4 151 40.4
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 3.0e-17 92.4 149 40.3
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 3.9e-17 92.0 149 40.3
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 3.9e-17 92.0 151 41.7
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 5.1e-17 91.7 149 43.0
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 5.1e-17 91.7 147 44.2
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 5.1e-17 91.7 127 47.2
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 5.1e-17 91.7 159 40.9
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 8.7e-17 90.9 154 39.0
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 8.7e-17 90.9 160 39.4
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 8.7e-17 90.9 115 49.6
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 8.7e-17 90.9 174 42.5
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 1.1e-16 90.5 105 52.4
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 1.5e-16 90.1 182 39.0
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 1.9e-16 89.7 122 50.8
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 2.5e-16 89.4 131 45.8
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 3.3e-16 89.0 151 41.7
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 4.3e-16 88.6 128 47.7
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 7.3e-16 87.8 82 56.1
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 7.3e-16 87.8 121 47.9
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 9.6e-16 87.4 130 46.9
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 9.6e-16 87.4 94 52.1
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 9.6e-16 87.4 129 46.5
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.3e-15 87.0 139 43.9
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.6e-15 86.7 153 41.2
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 2.1e-15 86.3 111 46.8
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 2.1e-15 86.3 137 47.4
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 2.1e-15 86.3 137 47.4
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.8e-15 85.9 114 47.4
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.8e-15 85.9 118 46.6
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 2.8e-15 85.9 172 36.6
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 3.6e-15 85.5 164 44.5
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 4.8e-15 85.1 145 40.7
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.8e-15 85.1 143 40.6
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 8.1e-15 84.3 147 41.5
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.1e-14 84.0 130 45.4
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 1.1e-14 84.0 132 43.2
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.1e-14 84.0 131 42.7
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 1.1e-14 84.0 136 47.1
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 1.1e-14 84.0 128 43.0
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 1.8e-14 83.2 160 38.1
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 1.8e-14 83.2 111 47.7
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 1.8e-14 83.2 158 39.9
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 3.1e-14 82.4 122 43.4
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.1e-14 82.4 117 46.2
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 4.0e-14 82.0 161 40.4
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 4.0e-14 82.0 82 52.4
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 5.3e-14 81.6 97 56.7
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 5.3e-14 81.6 116 46.6
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 9.0e-14 80.9 187 33.2
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 9.0e-14 80.9 130 41.5
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 9.0e-14 80.9 116 43.1
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 1.2e-13 80.5 107 54.2
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 2.0e-13 79.7 127 43.3
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 2.0e-13 79.7 75 56.0
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 2.0e-13 79.7 118 49.2
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 2.6e-13 79.3 123 44.7
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.4e-13 79.0 98 50.0
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 4.5e-13 78.6 128 43.0
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 5.8e-13 78.2 76 60.5
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 5.8e-13 78.2 72 56.9
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 5.8e-13 78.2 87 56.3
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 5.8e-13 78.2 137 43.1
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 5.8e-13 78.2 129 38.8
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 7.6e-13 77.8 118 43.2
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 7.6e-13 77.8 150 36.7
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 9.9e-13 77.4 77 59.7
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 9.9e-13 77.4 133 42.9
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 9.9e-13 77.4 95 50.5
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 9.9e-13 77.4 175 36.0
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 9.9e-13 77.4 163 38.7
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.3e-12 77.0 139 41.0
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 1.3e-12 77.0 72 59.7
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.7e-12 76.6 118 44.1
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 1.7e-12 76.6 82 52.4
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.7e-12 76.6 125 46.4
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.9e-12 75.9 134 41.0
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 3.8e-12 75.5 109 45.0
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 4.9e-12 75.1 140 40.0
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 6.4e-12 74.7 73 54.8
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.1e-11 73.9 70 61.4
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.1e-11 73.9 103 46.6
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 1.4e-11 73.6 85 51.8
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.4e-11 73.6 91 52.7
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 1.9e-11 73.2 173 34.7
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.9e-11 73.2 146 38.4
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.4e-11 72.8 122 42.6
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.4e-11 72.8 94 43.6
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.2e-11 72.4 102 52.0
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 5.4e-11 71.6 110 45.5
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 7.1e-11 71.2 113 44.2
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 9.3e-11 70.9 109 47.7
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 9.3e-11 70.9 128 41.4
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.6e-10 70.1 110 44.5
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.6e-10 70.1 77 53.2
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 1.6e-10 70.1 114 47.4
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 2.1e-10 69.7 77 45.5
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 2.7e-10 69.3 77 45.5
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 7.9e-10 67.8 109 42.2
SalBow8G0382 Salvia bowleyana HOM05D033521 ORTHO05D004171 2.3e-09 66.2 84 53.6
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 6.7e-09 64.7 111 41.4
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 4.3e-08 62.0 83 47.0
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 5.6e-08 61.6 77 53.2
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 1.3e-07 60.5 102 41.2
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 1.3e-07 60.5 68 52.9
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.8e-07 59.3 114 38.6
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 4.8e-07 58.5 110 40.0
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 1.4e-06 57.0 126 37.3
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 5.3e-06 55.1 91 39.6
MD13G1065600 Malus domestica HOM05D003853 ORTHO05D004171 6.9e-06 54.7 131 35.1


User provided reference genes

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