Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 1.9e-159 565.8 293 100.0
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 1.1e-130 470.3 293 82.9
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 5.0e-128 461.5 293 81.6
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 5.5e-111 404.8 293 75.1
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 4.4e-108 395.2 283 72.4
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 2.2e-107 392.9 283 71.7
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 3.7e-107 392.1 264 75.8
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 6.3e-107 391.3 283 71.4
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 6.3e-107 391.3 285 71.9
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 1.8e-106 389.8 292 69.2
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 4.1e-106 388.7 288 68.8
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 9.1e-106 387.5 248 79.0
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 2.7e-105 386.0 294 68.7
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 1.3e-104 383.6 238 80.3
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 2.9e-104 382.5 289 68.9
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 2.9e-104 382.5 291 70.4
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 8.5e-104 380.9 296 68.9
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 1.5e-103 380.2 243 78.6
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 2.5e-103 379.4 244 76.6
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 3.2e-103 379.0 293 67.6
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 3.2e-103 379.0 287 67.9
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 7.2e-103 377.9 247 76.1
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 9.4e-103 377.5 247 76.1
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 3.6e-102 375.6 246 76.4
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 5.2e-101 371.7 262 72.1
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 8.8e-101 370.9 244 75.4
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 8.8e-101 370.9 249 73.9
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 1.5e-100 370.2 276 69.2
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 2.0e-100 369.8 243 76.5
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 2.0e-100 369.8 293 67.9
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 3.4e-100 369.0 258 72.5
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 4.4e-100 368.6 249 73.1
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 4.4e-100 368.6 249 73.5
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 4.4e-100 368.6 292 65.8
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 5.7e-100 368.2 249 73.1
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 5.7e-100 368.2 240 77.1
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 5.7e-100 368.2 249 73.1
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 1.7e-99 366.7 309 64.4
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 1.8e-98 363.2 235 77.4
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 4.1e-98 362.1 244 75.8
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 7.0e-98 361.3 245 72.2
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 9.1e-98 360.9 279 68.5
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 1.6e-97 360.1 247 73.3
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 2.0e-97 359.8 248 71.8
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 2.0e-97 359.8 247 72.9
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 3.5e-97 359.0 230 78.7
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 3.5e-97 359.0 229 78.6
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 3.5e-97 359.0 251 71.7
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 5.9e-97 358.2 286 66.1
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 7.7e-97 357.8 277 67.9
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 1.0e-96 357.5 229 78.6
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.3e-96 357.1 287 66.6
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 1.3e-96 357.1 263 70.3
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 1.3e-96 357.1 245 72.2
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 2.3e-96 356.3 244 72.1
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 2.9e-96 355.9 230 78.7
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 3.8e-96 355.5 262 70.6
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 5.0e-96 355.1 246 72.4
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 6.6e-96 354.8 250 72.4
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 6.6e-96 354.8 248 71.8
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 8.6e-96 354.4 272 68.8
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 8.6e-96 354.4 261 69.7
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 1.5e-95 353.6 289 66.8
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 1.5e-95 353.6 234 75.6
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 1.9e-95 353.2 240 73.3
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 1.9e-95 353.2 243 72.4
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 1.9e-95 353.2 287 65.9
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 2.5e-95 352.8 274 68.2
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 3.3e-95 352.4 284 65.1
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 4.2e-95 352.1 236 74.6
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 5.5e-95 351.7 300 64.3
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 5.5e-95 351.7 244 73.8
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 7.2e-95 351.3 246 70.7
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 9.5e-95 350.9 297 64.0
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 1.2e-94 350.5 283 65.7
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 1.2e-94 350.5 246 72.4
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 4.7e-94 348.6 246 72.0
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 6.1e-94 348.2 285 65.3
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.4e-93 347.1 282 64.2
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 1.4e-93 347.1 285 64.9
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 1.8e-93 346.7 241 72.6
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 1.8e-93 346.7 237 73.4
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 2.3e-93 346.3 244 69.3
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 2.3e-93 346.3 249 71.1
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 4.0e-93 345.5 247 70.9
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 7.5e-92 341.3 239 71.1
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 8.3e-91 337.8 219 74.4
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 1.1e-90 337.4 245 67.3
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 3.1e-90 335.9 250 70.0
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 1.1e-87 327.4 228 72.4
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 5.6e-87 325.1 250 69.2
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 1.2e-84 317.4 235 67.7
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 8.3e-83 311.2 247 62.8
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 3.5e-81 305.8 240 63.3
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 6.0e-81 305.1 257 64.6
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 1.0e-80 304.3 215 72.6
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 1.3e-80 303.9 246 61.0
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 2.3e-80 303.1 236 70.3
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 5.0e-80 302.0 215 70.7
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 1.9e-79 300.1 208 71.2
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 4.3e-79 298.9 204 74.5
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 2.1e-78 296.6 233 63.1
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.3e-75 287.3 250 60.4
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 2.1e-70 270.0 257 54.5
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 2.1e-70 270.0 206 67.5
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 3.6e-70 269.2 192 72.9
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 6.0e-65 251.9 301 49.5
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 9.9e-60 234.6 140 78.6
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.1e-47 194.5 148 67.6
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.6e-46 190.7 217 48.8
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 4.0e-45 186.0 234 45.3
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 1.5e-39 167.5 214 42.5
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 2.1e-33 147.1 115 63.5
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 6.7e-32 142.1 86 79.1
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 6.2e-30 135.6 137 55.5
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 4.8e-22 109.4 69 76.8
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 1.5e-20 104.4 82 61.0
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 1.4e-18 97.8 56 82.1
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 2.5e-18 97.1 59 78.0
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 1.6e-17 94.4 68 61.8
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 1.0e-16 91.7 136 44.9
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 5.1e-16 89.4 89 52.8
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 2.2e-14 84.0 58 75.9
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 4.8e-14 82.8 64 60.9
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 8.2e-14 82.0 63 58.7
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 1.1e-13 81.6 51 76.5
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 1.5e-12 77.8 55 72.7
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 2.6e-12 77.0 170 36.5
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 2.6e-12 77.0 175 34.9
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 1.3e-11 74.7 47 74.5
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 1.7e-11 74.3 53 67.9
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 3.0e-08 63.5 43 72.1
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 4.4e-07 59.7 82 45.1


User provided reference genes

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