Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 9.8e-112 406.8 198 100.0
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 3.4e-104 381.7 198 93.9
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.9e-99 365.9 198 89.9
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 5.6e-99 364.4 198 88.9
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 2.3e-84 315.8 198 74.7
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 1.1e-83 313.5 198 76.3
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 9.6e-83 310.5 198 74.7
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.3e-82 310.1 198 74.7
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 8.1e-82 307.4 198 73.2
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 1.1e-81 307.0 198 72.2
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 1.4e-81 306.6 198 73.2
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 2.4e-81 305.8 198 72.7
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 2.4e-81 305.8 198 72.2
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 2.4e-81 305.8 198 73.2
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 5.3e-81 304.7 198 73.2
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 6.9e-81 304.3 198 71.2
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 2.0e-80 302.8 198 72.7
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 2.6e-80 302.4 198 71.2
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 2.6e-80 302.4 198 71.7
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 4.4e-80 301.6 198 72.7
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 5.8e-80 301.2 198 71.2
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 71.2
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 9.9e-80 300.4 198 71.2
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.2e-79 299.3 198 71.7
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.2e-79 299.3 198 71.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 2.2e-79 299.3 198 71.7
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 3.8e-79 298.5 198 72.2
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 3.8e-79 298.5 198 70.7
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 72.2
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 72.2
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 1.1e-78 297.0 198 71.7
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 2.4e-78 295.8 198 70.7
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 3.2e-78 295.4 199 70.9
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 4.2e-78 295.0 198 69.7
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 7.1e-78 294.3 199 73.4
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 1.2e-77 293.5 198 70.7
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 3.5e-77 292.0 198 68.7
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 4.6e-77 291.6 198 66.7
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 6.0e-77 291.2 198 68.2
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 7.9e-77 290.8 206 67.5
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 1.3e-76 290.0 200 67.5
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 68.2
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 69.7
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 67.7
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 3.0e-76 288.9 198 69.2
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 3.0e-76 288.9 198 68.2
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.9e-76 288.5 198 70.2
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.9e-76 288.5 206 67.5
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 6.6e-76 287.7 198 66.7
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 8.7e-76 287.3 198 68.2
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 8.7e-76 287.3 198 67.2
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 8.7e-76 287.3 198 67.2
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.1e-75 287.0 198 66.7
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.9e-75 286.2 198 66.7
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 1.9e-75 286.2 198 66.7
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 3.3e-75 285.4 198 67.2
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 5.6e-75 284.6 198 66.7
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 5.6e-75 284.6 198 65.2
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 5.6e-75 284.6 198 68.2
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 5.6e-75 284.6 198 68.7
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 7.3e-75 284.3 198 66.7
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 9.6e-75 283.9 198 66.7
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 9.6e-75 283.9 198 67.2
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 9.6e-75 283.9 198 66.2
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 9.6e-75 283.9 198 66.2
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 1.6e-74 283.1 198 66.7
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 2.1e-74 282.7 198 66.2
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 2.8e-74 282.3 198 66.2
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 3.6e-74 282.0 176 75.6
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 8.1e-74 280.8 200 66.5
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 8.1e-74 280.8 241 58.9
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.4e-73 280.0 217 65.4
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 1.8e-73 279.6 198 66.7
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 2.4e-73 279.3 198 66.7
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 3.1e-73 278.9 198 65.7
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 4.0e-73 278.5 198 65.2
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 4.0e-73 278.5 198 65.7
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 4.0e-73 278.5 198 63.6
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 5.3e-73 278.1 198 65.7
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 6.9e-73 277.7 233 60.5
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 9.0e-73 277.3 198 62.6
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.2e-72 276.9 198 67.2
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 3.4e-72 275.4 198 64.1
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 9.9e-72 273.9 198 64.6
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.9e-71 272.3 234 56.8
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 3.8e-71 271.9 234 56.4
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 6.4e-71 271.2 216 60.6
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 5.5e-70 268.1 219 59.4
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 2.1e-69 266.2 198 62.1
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.0e-68 263.8 198 63.1
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 2.3e-68 262.7 169 72.8
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 2.3e-68 262.7 236 55.1
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.9e-68 261.9 198 60.6
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 6.7e-68 261.2 171 69.0
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 1.9e-67 259.6 198 60.6
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 6.2e-66 254.6 198 60.1
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.1e-65 253.8 188 66.0
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 1.1e-65 253.8 253 52.2
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 1.4e-65 253.4 180 65.6
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 7.6e-64 247.7 173 67.1
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 1.7e-63 246.5 198 58.6
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 3.5e-61 238.8 198 61.6
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 3.9e-60 235.3 169 63.9
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 5.1e-60 235.0 198 54.5
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 8.7e-60 234.2 191 58.6
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 1.1e-59 233.8 149 70.5
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 7.4e-59 231.1 153 68.0
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.4e-57 226.9 198 58.6
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 3.0e-52 209.1 167 59.3
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 6.7e-52 208.0 145 64.8
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 4.3e-51 205.3 198 48.5
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 5.7e-51 204.9 194 49.0
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 1.6e-50 203.4 198 44.9
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 1.8e-49 199.9 134 71.6
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 2.2e-47 193.0 193 45.6
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 6.5e-47 191.4 142 64.1
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 8.8e-44 181.0 134 59.0
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 7.4e-43 177.9 185 52.4
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 8.2e-42 174.5 115 72.2
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 9.1e-41 171.0 160 49.4
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 4.5e-40 168.7 130 56.9
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 7.7e-40 167.9 115 61.7
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 3.8e-39 165.6 115 62.6
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.9e-38 163.3 130 60.0
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.2e-37 160.6 111 72.1
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 9.7e-35 151.0 142 49.3
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 2.2e-34 149.8 143 50.3
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 9.1e-33 144.4 115 51.3
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.0e-32 143.3 115 51.3
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 2.3e-28 129.8 91 58.2
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 6.7e-28 128.3 77 84.4
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 3.7e-26 122.5 131 51.9
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 3.7e-26 122.5 97 64.9
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 4.8e-26 122.1 77 81.8
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.4e-25 120.6 145 39.3
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.6e-24 117.1 77 74.0
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 7.7e-24 114.8 77 75.3
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 1.1e-22 110.9 94 61.7
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 1.9e-22 110.2 77 71.4
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 1.9e-22 110.2 77 71.4
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 5.5e-22 108.6 77 70.1
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.1e-21 106.7 77 70.1
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.2e-20 102.1 83 61.4
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 1.5e-19 100.5 77 61.0
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 2.2e-18 96.7 68 60.3
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 2.8e-18 96.3 69 72.5
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 6.3e-18 95.1 72 66.7
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 8.3e-18 94.7 55 76.4
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.1e-17 92.4 75 62.7
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 1.3e-15 87.4 73 52.1
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 5.0e-15 85.5 64 65.6
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 4.2e-14 82.4 191 26.2
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 7.2e-14 81.6 145 40.0
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 4.7e-13 79.0 65 58.5
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 6.8e-12 75.1 55 50.9
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 1.5e-11 73.9 63 46.0
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 6.3e-10 68.6 56 53.6
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 8.3e-10 68.2 48 60.4
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 1.8e-09 67.0 46 71.7
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 1.6e-08 63.9 56 50.0
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 2.0e-08 63.5 188 33.0
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.3e-07 60.8 53 52.8
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 4.3e-06 55.8 56 50.0
Lsat_1_v5_gn_4_104380 Lactuca sativa HOM05D001722 ORTHO05D048310 5.6e-06 55.5 36 52.8


User provided reference genes

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