Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 3.5e-305 1050.8 539 100.0
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 1.6e-257 892.5 548 84.3
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 8.0e-257 890.2 546 84.1
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 1.2e-255 886.3 547 83.7
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 2.4e-205 719.2 553 68.0
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 1.2e-204 716.8 485 73.8
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 4.6e-204 714.9 553 66.2
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 1.0e-203 713.8 499 71.3
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 2.3e-203 712.6 471 74.9
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 3.0e-203 712.2 543 67.4
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 5.1e-203 711.4 559 66.9
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 6.6e-203 711.1 542 67.7
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 1.5e-202 709.9 464 75.6
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.5e-202 709.1 538 67.8
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 5.6e-202 708.0 549 67.2
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 1.2e-201 706.8 553 66.2
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.2e-201 706.8 539 68.3
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 1.6e-201 706.4 467 73.9
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 1.6e-201 706.4 486 72.6
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 8.1e-201 704.1 558 65.8
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.1e-200 703.7 558 65.8
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 1.1e-200 703.7 512 68.8
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 9.0e-200 700.7 513 69.8
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 9.0e-200 700.7 543 67.0
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 1.5e-199 699.9 496 71.4
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 1.5e-199 699.9 548 66.8
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 1.5e-199 699.9 477 74.0
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 3.4e-199 698.7 559 64.9
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 7.6e-199 697.6 471 72.0
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 9.9e-199 697.2 545 66.6
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.7e-198 696.4 496 71.0
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 1.7e-198 696.4 547 65.8
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 2.2e-198 696.0 528 67.2
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 2.2e-198 696.0 470 72.3
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 3.8e-198 695.3 511 68.3
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 4.9e-198 694.9 471 72.8
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 4.9e-198 694.9 464 73.7
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 6.4e-198 694.5 464 72.6
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 8.4e-198 694.1 470 72.3
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 9.3e-197 690.6 462 73.8
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 1.2e-196 690.3 547 64.4
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 1.2e-196 690.3 549 64.7
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 1.6e-196 689.9 497 70.2
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 2.7e-196 689.1 463 74.5
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 2.7e-196 689.1 463 74.5
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 3.5e-196 688.7 517 67.5
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 3.5e-196 688.7 471 71.8
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 6.0e-196 688.0 471 71.5
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 6.0e-196 688.0 479 70.4
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 6.0e-196 688.0 471 72.0
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 7.8e-196 687.6 468 72.4
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 1.0e-195 687.2 465 72.3
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 1.3e-195 686.8 517 67.3
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 2.3e-195 686.0 531 66.1
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 3.0e-195 685.6 471 71.1
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 3.0e-195 685.6 493 70.0
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 3.9e-195 685.3 532 65.4
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 6.6e-195 684.5 471 71.1
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 6.6e-195 684.5 501 69.3
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 1.1e-194 683.7 470 72.1
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 3.3e-194 682.2 547 64.4
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 4.3e-194 681.8 492 69.7
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 4.3e-194 681.8 530 65.8
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 7.3e-194 681.0 461 70.9
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 9.6e-194 680.6 474 70.7
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 9.6e-194 680.6 464 72.2
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 9.6e-194 680.6 557 62.8
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 1.3e-193 680.2 495 68.3
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 1.3e-193 680.2 540 64.4
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 1.3e-193 680.2 461 71.6
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 2.8e-193 679.1 489 69.3
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 2.8e-193 679.1 470 71.7
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 3.6e-193 678.7 560 64.1
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 4.8e-193 678.3 552 63.9
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 4.8e-193 678.3 488 69.5
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 6.2e-193 677.9 471 70.1
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 1.1e-192 677.2 474 70.7
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.4e-192 676.0 504 69.2
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 3.1e-192 675.6 459 71.5
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 4.0e-192 675.2 541 64.5
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 9.0e-192 674.1 469 70.1
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 1.2e-191 673.7 539 65.3
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 3.4e-191 672.2 480 69.6
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 4.5e-191 671.8 462 71.2
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 4.5e-191 671.8 497 67.8
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 7.6e-191 671.0 462 71.2
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 1.7e-190 669.8 488 68.9
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 1.4e-189 666.8 451 73.6
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 4.6e-188 661.8 528 63.4
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 1.8e-187 659.8 531 62.9
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 5.6e-186 654.8 453 70.4
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 2.8e-185 652.5 547 61.8
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 6.2e-185 651.4 551 61.7
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.9e-182 642.5 547 61.2
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.9e-181 639.8 460 70.4
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 9.3e-181 637.5 429 73.9
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.9e-178 629.8 409 73.1
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 6.9e-176 621.3 473 65.3
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.4e-175 619.0 489 63.2
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.0e-174 617.5 489 63.2
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.9e-173 613.2 483 63.6
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 7.9e-172 607.8 503 59.6
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 2.5e-170 602.8 470 66.2
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 1.7e-161 573.5 500 58.6
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 1.4e-160 570.5 507 57.8
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 3.1e-160 569.3 524 56.3
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 5.3e-160 568.5 462 62.8
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 6.9e-160 568.2 428 68.0
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 1.5e-159 567.0 470 63.4
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 2.5e-157 559.7 556 55.9
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 3.9e-155 552.4 550 54.0
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 3.3e-154 549.3 471 59.9
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 5.9e-151 538.5 489 54.2
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 3.2e-149 532.7 467 55.5
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 6.1e-148 528.5 484 54.1
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 2.3e-147 526.6 487 55.2
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 2.3e-131 473.4 483 48.4
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 2.2e-129 466.8 443 57.3
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 2.0e-127 460.3 372 64.8
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 7.0e-120 435.3 311 72.3
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 1.6e-119 434.1 499 45.9
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 1.0e-118 431.4 319 67.7
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 3.1e-115 419.9 498 46.0
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 1.3e-65 255.0 163 73.6
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 1.1e-59 235.3 477 32.1
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 1.1e-45 188.7 141 65.2
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 1.9e-32 144.8 434 25.6
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 6.1e-31 139.8 115 64.3
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 1.1e-27 129.0 71 78.9
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 1.4e-22 112.1 80 73.8
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 3.0e-14 84.3 415 27.7
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 6.8e-14 83.2 502 24.7
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 3.6e-07 60.8 66 51.5
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 3.0e-06 57.8 28 92.9


User provided reference genes

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