Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 0.0e+00 1240.3 620 100.0
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 7.9e-309 1063.1 622 85.5
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 3.7e-306 1054.3 623 85.4
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 1.4e-294 1015.8 600 85.2
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 8.0e-285 983.4 578 85.8
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 1.4e-220 770.0 628 62.3
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 1.3e-215 753.4 617 62.1
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 1.6e-213 746.5 635 60.0
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 6.2e-213 744.6 630 60.5
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 2.0e-211 739.6 622 59.0
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 1.1e-209 733.8 614 59.9
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 1.4e-209 733.4 614 59.3
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 3.2e-209 732.3 621 59.1
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 1.0e-207 727.2 618 59.9
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.3e-207 726.1 640 59.5
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 6.7e-207 724.5 637 59.7
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 4.3e-206 721.8 631 58.2
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 5.6e-206 721.5 644 59.5
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 2.1e-205 719.5 639 58.1
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 2.8e-205 719.2 636 59.6
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.8e-205 719.2 636 59.6
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 4.8e-205 718.4 633 58.0
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 2.4e-204 716.1 618 59.7
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 9.0e-204 714.1 611 60.1
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 1.2e-203 713.8 633 58.0
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 2.0e-203 713.0 536 64.9
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 7.6e-203 711.1 619 59.8
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 2.9e-202 709.1 618 58.7
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 1.1e-201 707.2 631 58.2
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 3.2e-201 705.7 628 56.5
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 7.1e-201 704.5 626 58.1
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 1.6e-200 703.4 631 56.9
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 2.7e-200 702.6 612 59.0
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.8e-199 699.9 626 58.3
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 2.5e-198 696.0 630 57.5
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 3.3e-198 695.7 626 58.1
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 3.7e-197 692.2 631 56.6
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 1.1e-196 690.6 631 55.3
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 1.4e-196 690.3 648 54.3
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 1.5e-195 686.8 623 56.8
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.0e-194 681.8 615 56.7
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 5.0e-194 681.8 515 67.2
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 3.2e-193 679.1 622 56.3
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 4.2e-193 678.7 633 55.3
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 2.1e-192 676.4 633 54.7
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 2.1e-192 676.4 624 56.2
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 2.1e-192 676.4 625 55.0
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 2.3e-191 672.9 597 57.5
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 6.7e-191 671.4 621 55.9
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 9.7e-190 667.5 623 55.2
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 2.8e-189 666.0 635 56.1
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 3.7e-189 665.6 622 55.3
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 6.3e-189 664.8 619 55.9
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 5.3e-188 661.8 624 55.0
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 9.0e-188 661.0 638 53.1
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 2.0e-187 659.8 623 54.9
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 3.4e-187 659.1 638 53.3
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 5.9e-187 658.3 620 54.5
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 7.7e-187 657.9 441 70.7
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 2.9e-186 656.0 629 55.2
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 3.8e-186 655.6 623 55.1
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 3.8e-186 655.6 629 55.0
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 1.1e-185 654.1 632 54.3
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 1.9e-185 653.3 635 54.8
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 9.4e-185 651.0 537 60.7
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 1.5e-182 643.7 621 53.6
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 3.3e-182 642.5 628 54.5
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 4.3e-182 642.1 636 53.3
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 1.1e-180 637.5 637 52.3
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 4.5e-179 632.1 626 53.4
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 7.2e-177 624.8 626 52.6
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 2.7e-176 622.9 623 52.3
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 4.7e-176 622.1 491 61.3
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 4.7e-176 622.1 491 61.3
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.5e-174 617.1 617 52.0
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 2.8e-173 612.8 544 58.6
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.1e-172 610.9 659 52.2
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 3.0e-167 592.8 440 64.1
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 9.1e-164 581.3 548 54.0
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 9.1e-164 581.3 688 46.7
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.0e-162 577.8 546 55.1
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 1.3e-162 577.4 402 68.9
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 2.9e-162 576.2 614 50.8
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 3.8e-162 575.9 385 69.6
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 5.0e-162 575.5 480 59.2
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 1.3e-157 560.8 501 54.1
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 7.0e-156 555.1 392 66.6
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 7.0e-156 555.1 392 66.6
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 7.2e-153 545.0 386 67.6
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 1.4e-151 540.8 619 48.3
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 2.0e-150 537.0 389 66.6
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 2.4e-148 530.0 501 53.1
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 2.4e-148 530.0 389 64.8
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 3.8e-146 522.7 490 53.5
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 2.2e-141 506.9 592 45.4
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 9.2e-140 501.5 529 50.3
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 4.6e-139 499.2 503 53.3
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 5.0e-138 495.7 521 50.5
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 5.6e-137 492.3 447 56.6
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 4.1e-132 476.1 575 45.4
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 7.8e-131 471.9 462 53.9
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 1.2e-126 458.0 492 49.2
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.6e-126 456.8 468 50.9
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 8.3e-125 451.8 457 53.0
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 1.9e-121 440.7 473 49.9
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 1.2e-120 438.0 400 54.0
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 6.2e-120 435.6 507 46.9
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 7.6e-118 428.7 456 48.9
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 1.4e-111 407.9 325 59.4
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.8e-111 407.5 362 53.0
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 1.7e-109 401.0 264 70.5
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.2e-108 396.7 473 42.5
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 2.3e-98 364.0 447 40.5
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.5e-97 361.3 480 42.5
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 1.9e-97 360.9 257 65.0
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 3.0e-90 337.0 303 52.8
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 2.7e-83 313.9 332 52.4
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 4.6e-83 313.2 389 44.0
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 6.9e-79 299.3 276 51.8
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.9e-68 264.6 475 35.6
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 6.1e-67 259.6 199 56.8
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 7.4e-57 226.1 160 66.9
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 5.9e-46 189.9 247 48.2
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 1.9e-44 184.9 133 65.4
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 4.7e-43 180.3 195 42.6
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.5e-38 164.1 125 64.8
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.5e-36 158.7 125 62.4
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 4.7e-35 153.7 214 47.7
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.0e-34 152.5 122 59.8
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 5.7e-33 146.7 250 37.6
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 1.1e-31 142.5 117 62.4
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 9.5e-28 129.4 115 57.4
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 6.8e-26 123.2 223 36.3
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 2.5e-20 104.8 87 59.8
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 4.4e-17 94.0 204 34.8
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 1.2e-14 85.9 134 42.5
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.8e-11 74.7 79 49.4
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 3.2e-07 61.2 55 58.2
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 3.2e-07 61.2 55 58.2
QL01p050333 Quercus lobata HOM05D005279 ORTHO05D037448 1.6e-06 58.9 66 51.5


User provided reference genes

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