Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 8.3e-158 560.5 310 100.0
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 5.0e-86 322.0 336 65.8
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.9e-85 320.1 341 64.8
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.5e-82 310.5 340 61.8
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 9.8e-66 254.6 350 50.0
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 1.1e-64 251.1 356 49.4
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 7.0e-64 248.4 375 49.6
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.3e-62 244.2 363 47.4
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 2.9e-62 243.0 354 48.9
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 2.9e-62 243.0 367 44.4
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.1e-61 241.1 352 45.2
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.5e-61 240.7 353 47.0
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.9e-61 240.4 369 48.0
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 5.5e-61 238.8 352 46.6
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 1.2e-60 237.7 371 47.2
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 3.6e-60 236.1 336 47.3
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 1.4e-59 234.2 357 46.5
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.8e-59 233.8 355 49.3
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 5.2e-59 232.3 355 44.5
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 6.8e-59 231.9 345 49.9
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 6.8e-59 231.9 359 46.8
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 6.8e-59 231.9 374 45.7
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 2.6e-58 229.9 355 48.7
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 3.4e-58 229.6 356 49.2
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 9.8e-58 228.0 371 46.1
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.8e-57 226.5 354 46.9
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 3.7e-57 226.1 358 46.6
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 6.3e-57 225.3 335 49.9
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 6.3e-57 225.3 335 49.9
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 6.3e-57 225.3 335 49.9
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 1.1e-56 224.6 356 42.7
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 1.4e-56 224.2 347 48.4
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 2.4e-56 223.4 343 49.6
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 3.1e-56 223.0 335 46.9
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 4.1e-56 222.6 357 45.1
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 4.1e-56 222.6 363 45.5
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 5.4e-56 222.2 370 43.8
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 5.4e-56 222.2 356 44.4
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 9.2e-56 221.5 372 44.9
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 9.2e-56 221.5 363 44.4
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 1.6e-55 220.7 376 42.0
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.6e-55 220.7 362 44.2
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 2.7e-55 219.9 323 48.3
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.5e-55 219.5 358 44.1
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.5e-55 219.5 354 47.2
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 3.5e-55 219.5 357 47.1
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 4.5e-55 219.2 362 43.6
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 5.9e-55 218.8 379 44.1
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 1.0e-54 218.0 358 42.2
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 1.0e-54 218.0 360 44.7
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 1.3e-54 217.6 337 47.8
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 1.7e-54 217.2 377 40.8
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 1.7e-54 217.2 369 45.5
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 3.8e-54 216.1 372 45.4
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 8.6e-54 214.9 365 44.9
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 8.6e-54 214.9 352 44.6
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.1e-53 214.5 343 47.8
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 2.5e-53 213.4 345 46.4
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 3.3e-53 213.0 338 48.2
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 7.3e-53 211.8 370 40.8
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 2.1e-52 210.3 324 49.7
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 1.0e-51 208.0 377 43.2
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.8e-51 207.2 353 46.2
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 5.2e-51 205.7 375 40.0
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 5.2e-51 205.7 313 48.6
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 6.8e-51 205.3 362 46.1
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 1.2e-50 204.5 354 41.0
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 2.0e-50 203.8 344 47.4
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 2.0e-50 203.8 316 46.2
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 2.6e-50 203.4 352 44.0
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 9.8e-50 201.4 351 40.2
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 1.3e-49 201.1 355 42.3
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 3.7e-49 199.5 354 40.1
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.1e-48 198.0 332 43.1
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 1.8e-48 197.2 360 42.8
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 2.4e-48 196.8 316 43.7
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 4.1e-48 196.1 327 45.0
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 4.1e-48 196.1 318 40.6
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 4.1e-48 196.1 335 43.6
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 2.7e-47 193.4 367 41.1
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 6.0e-47 192.2 356 44.7
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 7.8e-47 191.8 334 44.3
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.3e-46 191.0 345 41.4
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 3.9e-46 189.5 329 43.8
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 3.9e-46 189.5 273 45.8
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 5.0e-46 189.1 361 42.7
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.1e-45 188.0 335 42.7
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.5e-45 187.6 330 40.0
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 1.9e-45 187.2 336 42.9
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-45 187.2 334 41.6
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 1.9e-45 187.2 336 41.4
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.5e-45 186.8 334 43.1
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 3.3e-45 186.4 334 41.9
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 4.3e-45 186.0 347 42.9
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 5.6e-45 185.7 334 41.6
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 5.6e-45 185.7 326 42.0
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 7.3e-45 185.3 337 41.2
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.8e-43 180.6 354 42.9
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 1.8e-43 180.6 315 44.8
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 5.2e-43 179.1 318 41.8
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 5.2e-43 179.1 354 42.9
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 5.2e-43 179.1 380 38.9
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 5.2e-43 179.1 335 43.9
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 6.8e-43 178.7 359 43.7
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 8.9e-43 178.3 360 42.8
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 1.2e-42 177.9 332 42.2
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 1.2e-42 177.9 351 42.5
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 1.5e-42 177.6 333 41.1
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 2.0e-42 177.2 292 43.2
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 2.6e-42 176.8 380 38.7
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 3.4e-42 176.4 380 39.2
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 5.8e-42 175.6 337 40.1
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 9.8e-42 174.9 311 42.4
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 2.2e-41 173.7 297 43.8
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.7e-41 172.9 328 41.5
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 4.9e-41 172.6 341 38.4
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.4e-40 171.0 341 39.6
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 1.4e-40 171.0 361 42.7
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 3.2e-40 169.9 358 41.3
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 4.1e-40 169.5 339 39.2
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 4.1e-40 169.5 339 39.2
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 4.1e-40 169.5 339 39.2
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 5.4e-40 169.1 378 40.2
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 5.4e-40 169.1 378 40.2
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 5.4e-40 169.1 378 40.2
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.1e-39 167.2 341 41.6
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 7.8e-39 165.2 342 38.9
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 1.3e-38 164.5 338 38.8
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.3e-38 164.5 335 41.8
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 1.7e-38 164.1 363 41.0
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 3.0e-38 163.3 330 35.8
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 5.0e-38 162.5 363 38.8
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 5.0e-38 162.5 327 39.1
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-37 160.6 313 40.3
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 1.9e-37 160.6 339 37.2
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 5.6e-37 159.1 341 38.4
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 9.5e-37 158.3 260 41.2
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.2e-36 157.9 362 39.0
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 1.2e-36 157.9 316 38.6
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.8e-36 156.8 334 36.8
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 8.1e-36 155.2 313 39.0
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 1.8e-35 154.1 229 48.0
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 2.3e-35 153.7 307 39.1
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 4.0e-35 152.9 330 42.1
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 9.2e-32 141.7 313 36.7
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 4.6e-31 139.4 310 34.8
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 4.6e-31 139.4 349 36.7
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 1.0e-30 138.3 328 36.0
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 1.9e-29 134.0 203 45.3
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 3.3e-29 133.3 241 41.5
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 7.3e-29 132.1 373 34.0
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 9.5e-29 131.7 295 35.9
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 2.8e-28 130.2 234 41.0
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 8.1e-28 128.6 313 35.1
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 3.1e-27 126.7 338 35.8
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 7.6e-26 122.1 307 33.6
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 4.9e-25 119.4 353 32.0
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.2e-24 116.7 313 36.1
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 5.4e-24 115.9 328 34.5
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 2.1e-23 114.0 314 33.8
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 1.0e-22 111.7 386 29.3
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 1.1e-21 108.2 296 36.5
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.9e-21 107.5 401 28.2
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 9.0e-19 98.6 324 37.0
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 1.4e-16 91.3 177 42.4
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 3.2e-16 90.1 170 38.8
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.8e-11 74.3 372 30.1
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 5.3e-11 72.8 173 38.2
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 6.9e-11 72.4 90 50.0
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 5.1e-06 56.2 279 27.6
HPP92_019313 Vanilla planifolia HOM05D003923 ORTHO05D004553 5.1e-06 56.2 222 29.3


User provided reference genes

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