Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 1.7e-82 309.3 156 100.0
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 9.7e-22 107.5 113 49.6
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 2.2e-21 106.3 114 52.6
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.8e-21 105.1 104 52.9
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.1e-20 104.0 110 52.7
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 1.4e-20 103.6 108 50.9
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.4e-20 103.6 108 50.9
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.4e-20 103.6 108 50.9
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.8e-20 103.2 107 51.4
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.4e-20 102.8 81 60.5
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 3.1e-20 102.4 121 50.4
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 3.1e-20 102.4 101 50.5
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 4.1e-20 102.1 77 66.2
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 5.3e-20 101.7 117 48.7
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 5.3e-20 101.7 103 48.5
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 9.1e-20 100.9 119 44.5
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.2e-19 100.5 107 53.3
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.2e-19 100.5 120 48.3
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 1.2e-19 100.5 110 50.9
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 1.5e-19 100.1 112 49.1
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 3.5e-19 99.0 112 51.8
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 4.5e-19 98.6 125 47.2
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 4.5e-19 98.6 110 49.1
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 4.5e-19 98.6 78 62.8
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 5.9e-19 98.2 114 47.4
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 7.7e-19 97.8 100 50.0
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 7.7e-19 97.8 117 47.9
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 7.7e-19 97.8 84 60.7
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 1.0e-18 97.4 123 45.5
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 1.7e-18 96.7 109 48.6
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.2e-18 96.3 107 49.5
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 2.9e-18 95.9 86 55.8
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 3.8e-18 95.5 107 49.5
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 6.5e-18 94.7 82 56.1
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.5e-18 94.7 109 47.7
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 6.5e-18 94.7 106 49.1
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 1.1e-17 94.0 116 44.8
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 1.1e-17 94.0 94 50.0
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.9e-17 93.2 106 48.1
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 2.5e-17 92.8 84 57.1
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 2.5e-17 92.8 86 54.7
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 3.2e-17 92.4 68 64.7
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 5.5e-17 91.7 84 57.1
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 5.5e-17 91.7 138 39.9
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 5.5e-17 91.7 96 49.0
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 9.4e-17 90.9 105 49.5
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 9.4e-17 90.9 105 44.8
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 9.4e-17 90.9 86 51.2
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 1.6e-16 90.1 116 49.1
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 1.6e-16 90.1 108 47.2
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 2.1e-16 89.7 108 45.4
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 2.1e-16 89.7 103 45.6
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 2.7e-16 89.4 108 47.2
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 2.7e-16 89.4 108 47.2
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 2.7e-16 89.4 64 67.2
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 2.7e-16 89.4 64 67.2
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 2.7e-16 89.4 105 44.8
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 2.7e-16 89.4 73 53.4
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 4.7e-16 88.6 101 47.5
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 4.7e-16 88.6 108 45.4
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 6.1e-16 88.2 108 45.4
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 6.1e-16 88.2 103 48.5
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 6.1e-16 88.2 127 44.1
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 8.0e-16 87.8 108 46.3
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 8.0e-16 87.8 108 46.3
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 8.0e-16 87.8 108 46.3
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 8.0e-16 87.8 108 46.3
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.4e-15 87.0 102 49.0
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 1.4e-15 87.0 68 61.8
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 1.8e-15 86.7 107 47.7
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.8e-15 86.7 106 46.2
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 1.8e-15 86.7 111 45.9
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 3.0e-15 85.9 108 46.3
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 3.0e-15 85.9 111 48.6
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 3.9e-15 85.5 67 59.7
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 3.9e-15 85.5 67 59.7
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.9e-15 85.5 117 44.4
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.9e-15 85.5 82 54.9
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.9e-15 85.5 82 54.9
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 5.2e-15 85.1 84 52.4
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 6.7e-15 84.7 106 46.2
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 8.8e-15 84.3 66 62.1
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 8.8e-15 84.3 85 50.6
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 8.8e-15 84.3 66 62.1
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.8e-15 84.3 105 46.7
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.8e-15 84.3 117 45.3
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 8.8e-15 84.3 107 45.8
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 8.8e-15 84.3 65 55.4
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.1e-14 84.0 110 46.4
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.1e-14 84.0 106 41.5
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.1e-14 84.0 106 46.2
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 1.5e-14 83.6 66 59.1
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 1.5e-14 83.6 66 62.1
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.5e-14 83.6 87 49.4
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 2.0e-14 83.2 66 63.6
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 2.6e-14 82.8 108 45.4
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 2.6e-14 82.8 64 62.5
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 2.6e-14 82.8 64 62.5
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 2.6e-14 82.8 123 39.8
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 3.3e-14 82.4 60 65.0
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.3e-14 82.4 72 59.7
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.3e-14 82.4 117 44.4
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 9.7e-14 80.9 72 55.6
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.7e-13 80.1 158 38.0
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 2.8e-13 79.3 69 56.5
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.1e-12 77.4 89 46.1
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.4e-12 77.0 158 36.7
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 2.4e-12 76.3 67 58.2
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.4e-12 76.3 85 47.1
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.1e-12 75.9 85 45.9
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.1e-12 75.5 85 47.1
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 5.3e-12 75.1 109 43.1
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 9.1e-12 74.3 85 45.9
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.2e-11 73.9 85 45.9
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 1.2e-11 73.9 75 48.0
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.0e-11 73.2 51 64.7
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 2.0e-11 73.2 78 46.2
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 2.0e-11 73.2 129 38.0
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 2.6e-11 72.8 83 47.0
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.6e-11 72.8 151 33.8
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 3.5e-11 72.4 113 41.6
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 3.5e-11 72.4 118 37.3
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 3.5e-11 72.4 106 43.4
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 4.5e-11 72.0 97 42.3
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 7.7e-11 71.2 166 33.7
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 7.7e-11 71.2 143 33.6
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.0e-10 70.9 63 55.6
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 1.3e-10 70.5 60 56.7
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.7e-10 70.1 101 46.5
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 1.1e-09 67.4 93 49.5
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 1.5e-09 67.0 50 58.0
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 1.9e-09 66.6 99 43.4
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 2.5e-09 66.2 102 44.1
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 7.2e-09 64.7 72 44.4
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 1.6e-08 63.5 58 51.7
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 1.6e-08 63.5 105 41.0
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 3.6e-08 62.4 93 40.9
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 3.6e-08 62.4 93 40.9
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 4.7e-08 62.0 84 42.9
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 6.1e-08 61.6 79 41.8
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.4e-07 60.5 64 48.4
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 3.0e-07 59.3 85 41.2
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 3.0e-07 59.3 85 41.2
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 8.8e-07 57.8 91 38.5
ECA232G0105 Erigeron canadensis HOM05D004520 ORTHO05D005520 1.5e-06 57.0 156 31.4
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.5e-06 57.0 125 35.2
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 1.5e-06 57.0 84 41.7
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 1.5e-06 57.0 75 44.0
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 2.0e-06 56.6 73 41.1
Ca_26311_v3 Cicer arietinum L. HOM05D016564 ORTHO05D019006 2.6e-06 56.2 90 40.0
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 2.6e-06 56.2 87 37.9
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 2.6e-06 56.2 83 41.0
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 2.6e-06 56.2 36 72.2
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 4.4e-06 55.5 85 41.2
FAN02G1750 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.4e-06 55.5 78 42.3
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 4.4e-06 55.5 42 57.1
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 5.7e-06 55.1 99 36.4
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 5.7e-06 55.1 64 46.9
ClCG01G012170 Citrullus lanatus HOM05D004622 ORTHO05D005431 7.5e-06 54.7 69 42.0
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 7.5e-06 54.7 125 34.4
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 7.5e-06 54.7 125 34.4
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 7.5e-06 54.7 125 34.4
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 7.5e-06 54.7 125 34.4
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 7.5e-06 54.7 65 44.6
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 7.5e-06 54.7 69 44.9


User provided reference genes

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