Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 0.0e+00 1333.2 662 100.0
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 3.4e-302 1041.2 697 76.2
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 3.0e-298 1028.1 694 75.8
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 2.6e-233 812.4 706 59.1
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 3.4e-233 812.0 698 59.7
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 4.4e-225 785.0 707 56.6
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 9.2e-223 777.3 694 57.2
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 1.2e-222 776.9 681 57.6
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 2.7e-222 775.8 681 57.9
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 1.0e-221 773.9 694 57.1
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 1.9e-220 769.6 710 55.6
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 3.3e-220 768.8 681 57.4
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 1.1e-218 763.8 707 55.7
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.2e-217 760.4 722 54.6
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 5.8e-217 758.1 722 54.4
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 3.2e-215 752.3 708 54.4
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 1.6e-214 750.0 707 55.0
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 4.3e-212 741.9 697 55.4
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 5.6e-212 741.5 681 55.5
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 5.6e-212 741.5 671 57.1
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 1.8e-210 736.5 696 54.9
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 4.0e-210 735.3 702 54.8
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 2.9e-208 729.2 713 54.1
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 2.1e-206 723.0 700 54.0
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 2.1e-206 723.0 682 54.4
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 1.3e-205 720.3 703 53.8
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 3.0e-205 719.2 700 53.9
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 3.9e-205 718.8 690 53.9
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 9.9e-201 704.1 710 52.0
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 1.7e-200 703.4 695 52.9
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 1.2e-198 697.2 708 52.0
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 4.3e-196 688.7 710 52.0
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 2.8e-195 686.0 761 49.3
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 6.2e-195 684.9 641 55.2
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.0e-192 677.6 698 48.7
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 8.4e-192 674.5 610 58.9
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.1e-191 674.1 694 50.3
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 1.4e-191 673.7 694 50.3
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 1.9e-191 673.3 672 51.5
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 5.5e-191 671.8 703 49.1
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 7.1e-191 671.4 706 49.3
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 9.3e-191 671.0 698 49.6
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 7.9e-190 667.9 688 50.0
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 1.8e-189 666.8 698 48.3
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 1.9e-188 663.3 673 52.0
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 2.5e-188 662.9 710 50.6
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 6.3e-187 658.3 701 48.4
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 8.2e-187 657.9 589 57.7
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 8.2e-187 657.9 692 48.4
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 1.4e-186 657.1 690 48.1
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 6.9e-186 654.8 701 48.2
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 1.0e-184 651.0 710 49.7
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.3e-184 650.6 690 50.1
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 1.7e-184 650.2 697 47.6
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 2.2e-184 649.8 689 50.8
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 2.9e-184 649.4 715 48.4
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 4.2e-183 645.6 703 47.1
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 1.6e-182 643.7 686 48.5
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.4e-181 640.6 694 49.6
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 3.9e-181 639.0 708 47.2
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 1.5e-180 637.1 704 47.4
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 1.1e-178 630.9 701 46.4
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 2.4e-178 629.8 671 48.4
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.1e-175 620.9 700 47.9
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 1.6e-174 617.1 692 48.0
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 1.4e-173 614.0 671 46.9
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 3.9e-173 612.5 673 48.0
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 8.8e-173 611.3 687 46.3
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 2.8e-171 606.3 497 60.6
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.3e-168 597.4 736 45.1
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 3.6e-166 589.3 672 48.1
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 7.4e-164 581.6 689 45.9
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 3.7e-163 579.3 508 55.7
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 1.1e-162 577.8 540 56.7
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 2.7e-153 546.6 684 43.6
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 1.0e-152 544.7 592 49.5
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 8.8e-149 531.6 452 59.5
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 1.3e-147 527.7 392 64.0
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 1.7e-147 527.3 506 51.0
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 1.7e-144 517.3 595 48.2
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 7.2e-143 511.9 553 48.5
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 3.5e-137 493.0 480 54.2
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 2.3e-136 490.3 529 50.7
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 1.5e-135 487.6 434 56.2
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 5.6e-135 485.7 434 57.8
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 1.2e-134 484.6 446 54.9
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 1.4e-130 471.1 489 50.7
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 4.1e-130 469.5 606 44.7
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 1.2e-129 468.0 635 44.3
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 1.3e-123 448.0 437 54.5
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 2.4e-122 443.7 544 44.7
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 1.5e-108 397.9 496 44.2
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 6.4e-107 392.5 408 48.5
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 8.1e-102 375.6 650 36.2
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 7.6e-92 342.4 842 29.8
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 6.7e-88 329.3 579 34.5
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 2.1e-86 324.3 766 29.0
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 2.4e-85 320.9 695 30.4
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 8.4e-83 312.4 680 32.9
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.4e-82 311.6 692 30.8
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 4.2e-82 310.1 692 30.6
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 8.4e-75 285.8 422 39.1
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.2e-65 255.4 226 56.2
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 3.2e-58 230.7 321 42.7
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 1.6e-49 201.8 222 48.2
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 3.0e-48 197.6 207 48.3
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 8.2e-46 189.5 186 51.6
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.3e-43 182.2 160 51.2
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 6.8e-40 169.9 131 59.5
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 1.3e-35 155.6 146 56.8
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-34 152.1 303 34.0
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 9.1e-29 132.9 205 38.5
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 1.1e-26 125.9 89 60.7
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 4.7e-25 120.6 175 38.9
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.4e-24 119.0 146 45.2
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 1.4e-24 119.0 190 42.6
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 3.7e-22 110.9 133 43.6
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 5.9e-20 103.6 250 27.2
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 4.6e-12 77.4 59 54.2
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 1.5e-10 72.4 101 38.6
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 4.3e-10 70.9 363 24.5
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 7.3e-10 70.1 386 22.5
Nitab4.5_0004439g0160 Nicotiana tabacum HOM05D002159 ORTHO05D005625 2.8e-09 68.2 396 22.2
Nn7g37167 Nelumbo nucifera HOM05D006558 ORTHO05D008424 3.6e-09 67.8 47 70.2
Solyc03g025540.3 Solanum lycopersicum HOM05D002159 ORTHO05D005625 3.6e-09 67.8 386 23.6
Sopen03g004380 Solanum pennellii HOM05D002159 ORTHO05D005625 3.6e-09 67.8 386 23.6
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 4.7e-09 67.4 390 23.6
Glyma.16G182300 Glycine max HOM05D002159 ORTHO05D005625 2.3e-08 65.1 385 21.0
AUR62015961 Chenopodium quinoa HOM05D002159 ORTHO05D005625 5.2e-08 63.9 384 22.9
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 8.9e-08 63.2 48 58.3
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 1.5e-07 62.4 58 53.4
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 1.5e-07 62.4 371 22.9
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 1.5e-07 62.4 386 22.0
Glyma.09G136900 Glycine max HOM05D002159 ORTHO05D005625 2.0e-07 62.0 385 20.8
Hma1.2p1_1604F.1_g293320 Hydrangea macrophylla HOM05D002159 ORTHO05D005625 2.0e-07 62.0 388 23.5
AL6G35190 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 2.6e-07 61.6 376 21.5
Lj2g0019958 Lotus japonicus HOM05D002159 ORTHO05D005625 2.6e-07 61.6 393 21.1
Phvul.004G114000 Phaseolus vulgaris HOM05D002159 ORTHO05D005625 2.6e-07 61.6 362 20.7
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 2.6e-07 61.6 83 36.1
AT5G23880 Arabidopsis thaliana HOM05D002159 ORTHO05D005625 3.4e-07 61.2 376 21.5
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 3.4e-07 61.2 57 43.9
Peaxi162Scf00444g00532 Petunia axillaris HOM05D002159 ORTHO05D005625 3.4e-07 61.2 395 21.3
Prupe.2G296200 Prunus persica HOM05D002159 ORTHO05D005625 3.4e-07 61.2 374 21.1
Lalb_Chr03g0034671 Lupinus albus HOM05D002159 ORTHO05D005625 5.8e-07 60.5 384 21.1
Thhalv10003707m.g Eutrema salsugineum HOM05D002159 ORTHO05D005625 9.8e-07 59.7 361 21.6
QL09p013785 Quercus lobata HOM05D002159 ORTHO05D005625 9.8e-07 59.7 385 20.8
CARHR189680 Cardamine hirsuta HOM05D002159 ORTHO05D005625 1.3e-06 59.3 361 21.3
PSO478G3748 Papaver somniferum HOM05D002159 ORTHO05D005625 1.3e-06 59.3 280 24.6
PSO782G0249 Papaver somniferum HOM05D002159 ORTHO05D005625 1.3e-06 59.3 280 24.3
Sed0009742 Sechium edule HOM05D002159 ORTHO05D005625 1.3e-06 59.3 385 21.8
Solyc05g150129.1 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.3e-06 59.3 61 44.3
Psat0s1874g0200 Pisum sativum HOM05D002159 ORTHO05D005625 1.7e-06 58.9 302 20.9
A06p34690 Brassica napus HOM05D002159 ORTHO05D005625 2.2e-06 58.5 374 20.3
C07p43800 Brassica napus HOM05D002159 ORTHO05D005625 2.2e-06 58.5 374 20.3
BraA06t26396Z Brassica rapa HOM05D002159 ORTHO05D005625 2.2e-06 58.5 374 20.3
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.2e-06 58.5 65 53.8
BcaNung01838 Brassica carinata HOM05D002159 ORTHO05D005625 3.7e-06 57.8 369 20.3
Carub.0006s2160 Capsella rubella HOM05D002159 ORTHO05D005625 3.7e-06 57.8 376 21.3
Ca_14555_v3 Cicer arietinum L. HOM05D002159 ORTHO05D005625 4.9e-06 57.4 299 20.7
ClCG05G008140 Citrullus lanatus HOM05D002201 ORTHO05D005625 4.9e-06 57.4 397 21.7
Medtr1g050492 Medicago truncatula HOM05D002159 ORTHO05D005625 4.9e-06 57.4 299 20.4
CiPaw.03G108100 Carya illinoinensis HOM05D002159 ORTHO05D005625 8.3e-06 56.6 392 20.4
Haze_26947 Corylus avellana HOM05D002001 ORTHO05D006833 8.3e-06 56.6 470 18.5
TPR.G8152 Trifolium pratense HOM05D002159 ORTHO05D005625 8.3e-06 56.6 294 20.4


User provided reference genes

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