Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 0.0e+00 1242.3 644 100.0
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 0.0e+00 1150.6 646 92.0
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 0.0e+00 1144.4 646 91.6
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 0.0e+00 1144.0 647 92.1
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 0.0e+00 1141.7 646 91.6
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 4.5e-275 951.0 656 76.1
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 1.1e-273 946.4 645 77.2
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 1.1e-273 946.4 656 75.3
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 1.4e-271 939.5 650 75.5
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 7.5e-270 933.7 649 74.0
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 1.3e-269 932.9 647 74.5
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 1.7e-269 932.6 649 73.8
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 2.9e-269 931.8 647 74.0
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 6.4e-269 930.6 653 74.4
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 6.4e-269 930.6 648 75.0
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 4.1e-268 927.9 649 75.5
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.2e-267 926.4 660 74.2
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 6.0e-267 924.1 646 75.5
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 7.8e-267 923.7 634 76.2
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 1.3e-266 922.9 647 74.0
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 5.0e-266 921.0 645 74.6
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 5.0e-266 921.0 645 74.7
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 2.5e-265 918.7 647 75.0
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 2.5e-265 918.7 647 74.7
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 2.1e-264 915.6 630 75.7
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 4.7e-264 914.4 645 73.8
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 4.7e-264 914.4 650 74.2
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 8.0e-264 913.7 645 74.0
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 8.0e-264 913.7 645 74.0
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.1e-263 913.3 650 74.0
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 2.3e-263 912.1 660 73.3
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 2.0e-262 909.1 644 75.3
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 7.5e-262 907.1 643 75.0
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 9.8e-262 906.7 645 74.3
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.1e-260 903.3 649 72.6
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 1.1e-260 903.3 653 72.9
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.1e-260 903.3 648 73.3
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 4.1e-260 901.4 648 73.1
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 9.2e-260 900.2 646 73.5
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 1.6e-259 899.4 649 72.0
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 1.6e-259 899.4 646 72.9
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 2.7e-259 898.7 650 72.0
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 6.0e-259 897.5 647 73.6
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 6.0e-259 897.5 641 73.9
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.0e-258 896.7 654 72.0
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 2.3e-258 895.6 646 73.7
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 6.6e-258 894.0 651 71.4
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 2.5e-257 892.1 638 74.0
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 3.3e-257 891.7 647 72.5
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 5.6e-257 891.0 631 74.8
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 1.2e-256 889.8 638 73.5
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 8.1e-256 887.1 630 75.6
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 3.1e-255 885.2 644 73.9
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 4.0e-255 884.8 651 71.6
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 4.4e-254 881.3 651 71.3
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 1.7e-253 879.4 658 70.7
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 2.9e-253 878.6 654 70.9
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.9e-252 875.9 651 71.0
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 2.4e-252 875.5 655 71.0
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 4.1e-252 874.8 654 70.9
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 4.1e-252 874.8 649 70.9
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 5.4e-252 874.4 650 71.7
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 9.2e-252 873.6 649 70.7
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 9.2e-252 873.6 649 70.7
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 2.1e-251 872.5 656 70.6
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 6.0e-251 870.9 662 69.6
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 6.0e-251 870.9 657 70.5
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 6.0e-251 870.9 665 69.2
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 6.0e-251 870.9 645 72.6
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 7.8e-251 870.5 654 70.8
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 2.3e-250 869.0 650 71.2
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 1.9e-249 865.9 653 70.0
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 3.3e-249 865.1 645 70.4
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 7.3e-249 864.0 653 70.6
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 7.3e-249 864.0 589 75.7
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 9.5e-249 863.6 648 70.4
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 1.2e-248 863.2 657 69.9
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 2.1e-248 862.4 626 73.2
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 3.6e-248 861.7 647 69.7
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 4.0e-247 858.2 651 68.8
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 8.9e-247 857.1 660 69.8
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 8.9e-247 857.1 648 70.4
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.2e-246 856.7 653 69.5
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 2.0e-246 855.9 662 69.6
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 3.4e-246 855.1 654 68.8
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 6.4e-245 850.9 648 70.2
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 8.4e-245 850.5 651 69.9
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.1e-244 850.1 640 71.1
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 1.9e-244 849.4 647 70.9
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 3.2e-244 848.6 654 69.3
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 6.0e-243 844.3 649 69.0
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 7.8e-243 844.0 640 69.4
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 2.3e-242 842.4 652 69.2
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 6.6e-242 840.9 647 67.4
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 6.6e-242 840.9 596 73.2
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 5.6e-241 837.8 650 69.7
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 7.3e-241 837.4 652 68.7
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 1.5e-238 829.7 660 68.5
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 3.4e-238 828.6 648 69.4
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 9.3e-236 820.5 653 67.1
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.5e-233 812.4 650 65.5
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 1.4e-228 796.6 646 68.4
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 1.0e-226 790.4 651 64.8
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 4.3e-225 785.0 642 65.7
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.1e-220 770.4 646 64.6
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 4.2e-220 768.5 646 64.2
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.0e-218 763.8 645 62.9
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 2.1e-211 739.6 628 65.9
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 7.9e-211 737.6 648 62.5
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 5.9e-206 721.5 647 59.8
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 8.5e-205 717.6 646 60.5
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.9e-201 706.4 543 71.3
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 3.8e-197 692.2 651 57.5
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.5e-193 680.2 640 60.5
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.6e-193 679.5 635 59.7
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 1.1e-188 664.1 653 56.8
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 8.0e-187 657.9 651 56.1
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 1.3e-181 640.6 626 59.1
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.2e-171 607.4 647 53.8
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.3e-157 560.8 550 57.8
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 4.4e-153 545.8 634 53.0
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 5.4e-151 538.9 667 48.1
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 3.5e-142 509.6 669 45.0
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 9.9e-129 464.9 672 42.3
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 3.2e-119 433.3 350 66.0
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 2.9e-112 410.2 343 66.5
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 2.1e-94 350.9 394 50.5
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 3.9e-93 346.7 242 69.4
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 2.6e-65 254.2 298 50.0
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 4.0e-45 187.2 118 83.1
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 5.6e-39 166.8 565 27.3
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 2.3e-37 161.4 118 67.8
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 1.4e-29 135.6 115 67.0
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 4.7e-14 84.0 96 52.1
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 3.5e-09 67.8 44 70.5
SalBow4G0612 Salvia bowleyana HOM05D005586 ORTHO05D360416 3.5e-09 67.8 51 60.8
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 4.6e-09 67.4 88 40.9
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 4.6e-09 67.4 51 54.9
CDE04G1231 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.3e-06 59.3 49 63.3


User provided reference genes

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