Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 1.7e-70 269.2 135 100.0
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.8e-64 249.2 133 91.0
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 4.1e-61 238.0 132 85.6
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 4.6e-60 234.6 133 85.0
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 6.6e-43 177.6 129 65.9
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.5e-42 176.4 127 66.9
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 3.3e-42 175.3 129 63.6
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 5.6e-42 174.5 133 61.7
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 9.5e-42 173.7 135 60.7
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.2e-41 173.3 125 67.2
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-41 173.3 125 67.2
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 2.1e-41 172.6 124 68.5
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.1e-41 172.6 127 66.1
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.8e-41 172.2 127 66.1
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.6e-41 171.8 127 65.4
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.6e-41 171.8 122 68.0
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 3.6e-41 171.8 124 65.3
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 3.6e-41 171.8 129 60.5
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 4.7e-41 171.4 131 61.1
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 4.7e-41 171.4 127 66.1
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.7e-41 171.4 132 64.4
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.4e-40 169.9 128 61.7
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.4e-40 169.9 127 63.0
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 1.8e-40 169.5 129 64.3
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 2.3e-40 169.1 127 63.8
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.3e-40 169.1 127 64.6
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 3.1e-40 168.7 131 59.5
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 5.2e-40 167.9 127 63.0
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 5.2e-40 167.9 133 60.9
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 5.2e-40 167.9 133 63.2
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 8.9e-40 167.2 128 62.5
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 8.9e-40 167.2 129 58.9
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 8.9e-40 167.2 127 63.0
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 8.9e-40 167.2 129 63.6
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 8.9e-40 167.2 129 62.0
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 8.9e-40 167.2 133 63.2
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 1.2e-39 166.8 127 62.2
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.5e-39 166.4 135 60.0
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.5e-39 166.4 127 62.2
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 2.0e-39 166.0 132 58.3
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 2.0e-39 166.0 124 62.9
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 2.0e-39 166.0 126 61.1
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.6e-39 165.6 126 66.7
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 3.4e-39 165.2 126 62.7
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 3.4e-39 165.2 129 62.8
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 3.4e-39 165.2 130 59.2
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 4.4e-39 164.9 127 60.6
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 5.8e-39 164.5 130 60.0
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 5.8e-39 164.5 127 63.0
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 5.8e-39 164.5 126 60.3
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 5.8e-39 164.5 124 62.1
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 7.6e-39 164.1 129 61.2
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 7.6e-39 164.1 128 59.4
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 7.6e-39 164.1 125 66.4
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 7.6e-39 164.1 124 62.1
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 9.9e-39 163.7 122 62.3
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 1.7e-38 162.9 122 60.7
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.7e-38 162.9 130 60.0
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 2.2e-38 162.5 129 59.7
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 2.9e-38 162.2 129 59.7
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.9e-38 162.2 126 61.9
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.9e-38 161.4 125 64.0
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 4.9e-38 161.4 123 64.2
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 4.9e-38 161.4 124 62.1
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 6.4e-38 161.0 129 60.5
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 8.4e-38 160.6 133 60.9
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 8.4e-38 160.6 122 62.3
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 8.4e-38 160.6 120 63.3
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 1.1e-37 160.2 122 59.0
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 1.9e-37 159.5 127 56.7
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 3.2e-37 158.7 129 58.1
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 4.1e-37 158.3 125 60.0
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 4.1e-37 158.3 123 61.0
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 7.1e-37 157.5 126 58.7
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 7.1e-37 157.5 126 57.9
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 9.2e-37 157.1 120 64.2
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.6e-36 156.4 125 60.8
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 3.5e-36 155.2 124 60.5
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 7.8e-36 154.1 119 59.7
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.0e-35 153.7 122 61.5
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.0e-35 153.7 122 59.0
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.0e-35 153.7 119 60.5
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.3e-35 153.3 120 59.2
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 3.0e-35 152.1 129 52.7
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 5.1e-35 151.4 122 59.0
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 6.6e-35 151.0 119 58.8
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 6.6e-35 151.0 126 56.3
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 8.6e-35 150.6 119 57.1
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.1e-34 150.2 120 60.8
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.1e-34 150.2 120 60.8
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.1e-34 150.2 120 60.8
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 1.1e-34 150.2 119 59.7
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.1e-34 150.2 133 54.1
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.5e-34 149.8 120 60.8
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.9e-34 149.4 119 59.7
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 2.5e-34 149.1 123 55.3
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 3.3e-34 148.7 122 60.7
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 3.3e-34 148.7 121 57.9
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 4.3e-34 148.3 119 59.7
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 5.6e-34 147.9 119 60.5
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 9.6e-34 147.1 122 56.6
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.2e-33 146.7 143 51.0
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.2e-33 146.7 122 57.4
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 1.6e-33 146.4 122 54.9
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.6e-33 145.2 125 55.2
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 6.2e-33 144.4 121 57.9
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 8.1e-33 144.1 120 59.2
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.1e-32 143.7 119 55.5
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.1e-32 143.7 122 55.7
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.1e-32 143.7 116 57.8
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.4e-32 143.3 119 55.5
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 1.4e-32 143.3 123 49.6
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 1.8e-32 142.9 118 55.1
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 2.4e-32 142.5 128 53.9
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 3.1e-32 142.1 116 58.6
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.1e-32 142.1 122 55.7
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 5.2e-32 141.4 118 56.8
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 1.2e-31 140.2 120 54.2
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.5e-31 139.8 122 54.1
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.5e-31 139.8 121 53.7
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.5e-31 139.8 107 64.5
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 2.0e-31 139.4 120 53.3
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 2.0e-31 139.4 120 53.3
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.6e-31 139.0 124 54.8
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.6e-31 139.0 122 57.4
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 2.6e-31 139.0 122 54.1
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 4.4e-31 138.3 123 56.9
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 5.8e-31 137.9 123 54.5
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 5.8e-31 137.9 123 54.5
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 5.8e-31 137.9 125 53.6
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 5.8e-31 137.9 122 53.3
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 5.8e-31 137.9 126 52.4
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 7.6e-31 137.5 122 58.2
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 7.6e-31 137.5 120 55.0
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 7.6e-31 137.5 107 57.0
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 7.6e-31 137.5 119 55.5
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.3e-30 136.7 128 50.0
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.3e-30 136.7 123 55.3
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.3e-30 136.7 120 53.3
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.3e-30 136.7 122 55.7
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 2.2e-30 136.0 119 54.6
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.9e-30 135.6 128 50.0
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 3.8e-30 135.2 118 50.8
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 3.8e-30 135.2 119 58.0
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.9e-30 134.8 122 54.1
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 6.4e-30 134.4 120 52.5
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 8.4e-30 134.0 117 53.8
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 3.2e-29 132.1 125 52.8
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 5.4e-29 131.3 116 55.2
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 2.7e-28 129.0 128 50.0
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.5e-28 128.6 108 59.3
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 3.0e-27 125.6 119 48.7
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 1.6e-25 119.8 120 54.2
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 8.1e-25 117.5 119 45.4
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.1e-24 117.1 101 54.5
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.8e-24 116.3 122 45.9
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 6.9e-24 114.4 136 45.6
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.9e-19 98.6 65 66.2
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 3.9e-19 98.6 79 60.8
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 6.2e-17 91.3 67 64.2
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 4.0e-16 88.6 122 37.7
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 5.3e-16 88.2 67 61.2
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.1e-13 80.5 55 65.5
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 7.1e-13 77.8 81 54.3
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.3e-13 77.4 53 66.0
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.7e-12 75.9 64 57.8
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 3.5e-12 75.5 112 34.8
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 4.6e-12 75.1 65 55.4
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 1.0e-11 73.9 73 53.4
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 1.8e-11 73.2 75 48.0
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.3e-10 68.6 64 48.4
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.3e-10 68.6 64 48.4
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.3e-09 67.0 62 51.6
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.1e-08 63.9 65 55.4
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.0e-06 57.4 59 49.2
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.8e-06 55.5 64 35.9


User provided reference genes

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