Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005520 Sechium edule HOM05D000406 ORTHO05D008572 3.9e-41 171.0 86 100.0
CsaV3_7G028300 Cucumis sativus L. HOM05D000406 ORTHO05D008572 2.0e-13 79.0 101 51.5
MELO3C015890.2 Cucumis melo HOM05D000406 ORTHO05D008572 2.7e-13 78.6 101 50.5
Ciclev10021328m.g Citrus clementina HOM05D000406 ORTHO05D008572 8.6e-12 73.6 121 41.3
Manes.05G068900 Manihot esculenta HOM05D000406 ORTHO05D008572 1.2e-10 69.7 101 45.5
TWI59G0594 Tripterygium wilfordii HOM05D000406 ORTHO05D008572 2.8e-10 68.6 101 44.6
MBI19_g13222_MAGBIO Magnolia biondii HOM05D000406 ORTHO05D008572 6.1e-10 67.4 101 44.6
Prupe.8G251700 Prunus persica HOM05D000406 ORTHO05D008572 8.0e-10 67.0 101 42.6
Solyc09g074370.4 Solanum lycopersicum HOM05D000406 ORTHO05D008572 8.0e-10 67.0 101 42.6
GSVIVG01011012001 Vitis vinifera HOM05D000406 ORTHO05D008572 8.0e-10 67.0 119 40.3
ClCG09G006540 Citrullus lanatus HOM05D000406 ORTHO05D008572 1.4e-09 66.2 78 51.3
Sc24g0004000 Simmondsia chinensis HOM05D000406 ORTHO05D008572 1.8e-09 65.9 101 42.6
PGSC0003DMG400016843 Solanum tuberosum HOM05D000406 ORTHO05D008572 1.8e-09 65.9 101 42.6
Nitab4.5_0001651g0020 Nicotiana tabacum HOM05D000406 ORTHO05D008572 2.3e-09 65.5 101 42.6
Nitab4.5_0002708g0020 Nicotiana tabacum HOM05D000406 ORTHO05D008572 2.3e-09 65.5 101 42.6
TAR636G0113 Trochodendron aralioides HOM05D000406 ORTHO05D008572 3.0e-09 65.1 101 43.6
CAN.G426.13 Capsicum annuum HOM05D000406 ORTHO05D008572 4.0e-09 64.7 133 38.3
Eucgr.H01215 Eucalyptus grandis HOM05D000406 ORTHO05D008572 4.0e-09 64.7 101 42.6
Peaxi162Scf00017g00320 Petunia axillaris HOM05D000406 ORTHO05D008572 4.0e-09 64.7 101 41.6
PSO832G2692 Papaver somniferum HOM05D000406 ORTHO05D008572 5.2e-09 64.3 101 42.6
SalBow3G0769 Salvia bowleyana HOM05D000406 ORTHO05D008572 5.2e-09 64.3 101 40.6
ATR0706G172 Amborella trichopoda HOM05D000406 ORTHO05D008572 6.8e-09 63.9 119 37.8
CANSAT35G1714 Cannabis sativa HOM05D000406 ORTHO05D008572 6.8e-09 63.9 101 40.6
MD03G1275100 Malus domestica HOM05D000406 ORTHO05D008572 6.8e-09 63.9 101 40.6
Nn4g26066 Nelumbo nucifera HOM05D000406 ORTHO05D008572 6.8e-09 63.9 99 43.4
vmacro02512 Vaccinium macrocarpon HOM05D000406 ORTHO05D008572 6.8e-09 63.9 82 47.6
HanXRQChr10g0283221 Helianthus annuus HOM05D000406 ORTHO05D008572 8.9e-09 63.5 82 46.3
Lalb_Chr02g0143051 Lupinus albus HOM05D000406 ORTHO05D008572 8.9e-09 63.5 101 41.6
Potri.014G135530 Populus trichocarpa HOM05D000406 ORTHO05D008572 8.9e-09 63.5 101 42.6
MSTRG.18196 Avicennia marina HOM05D000406 ORTHO05D008572 1.2e-08 63.2 101 40.6
Hma1.2p1_0399F.1_g144240 Hydrangea macrophylla HOM05D000406 ORTHO05D008572 1.5e-08 62.8 99 42.4
Lj5g0014031 Lotus japonicus HOM05D000406 ORTHO05D008572 1.5e-08 62.8 106 41.5
Rhsim13G0017800 Rhododendron simsii HOM05D000406 ORTHO05D008572 1.5e-08 62.8 82 47.6
CiPaw.07G099100 Carya illinoinensis HOM05D000406 ORTHO05D008572 2.0e-08 62.4 101 39.6
Ca_10378_v3 Cicer arietinum L. HOM05D000406 ORTHO05D008572 2.0e-08 62.4 101 40.6
Ca_29656_v3 Cicer arietinum L. HOM05D000406 ORTHO05D008572 2.0e-08 62.4 101 40.6
ECA247G0269 Erigeron canadensis HOM05D000406 ORTHO05D008572 2.0e-08 62.4 82 46.3
Glyma.02G152100 Glycine max HOM05D000406 ORTHO05D008572 2.0e-08 62.4 101 41.6
arahy.Tifrunner.gnm1.ann1.76TUS8 Arachis hypogaea HOM05D000406 ORTHO05D008572 2.6e-08 62.0 101 41.6
arahy.Tifrunner.gnm1.ann1.A2403X Arachis hypogaea HOM05D000406 ORTHO05D008572 2.6e-08 62.0 101 41.6
Cfa006050 Carpinus fangiana HOM05D000406 ORTHO05D008572 2.6e-08 62.0 101 40.6
FvH4_2g24640 Fragaria vesca HOM05D000406 ORTHO05D008572 2.6e-08 62.0 98 40.8
FAN24G1081 Fragaria x ananassa HOM05D002556 ORTHO05D008572 2.6e-08 62.0 98 40.8
MD11G1297100 Malus domestica HOM05D000406 ORTHO05D008572 2.6e-08 62.0 101 39.6
Sabra14G0101500 Salix brachista HOM05D002556 ORTHO05D008572 2.6e-08 62.0 101 42.6
TPR.G16945 Trifolium pratense HOM05D000406 ORTHO05D008572 2.6e-08 62.0 101 40.6
Psat6g168040 Pisum sativum HOM05D000406 ORTHO05D008572 3.4e-08 61.6 101 40.6
QL12p023841 Quercus lobata HOM05D000406 ORTHO05D008572 3.4e-08 61.6 101 40.6
HPP92_001618 Vanilla planifolia HOM05D000076 ORTHO05D002916 3.4e-08 61.6 100 43.0
CSS0012383 Camellia sinensis var. sinensis HOM05D000406 ORTHO05D008572 4.4e-08 61.2 101 40.6
Medtr1g088995 Medicago truncatula HOM05D000406 ORTHO05D008572 4.4e-08 61.2 101 40.6
Aqoxy5G00638 Aquilegia oxysepala HOM05D000406 ORTHO05D008572 5.7e-08 60.8 101 38.6
Cc01_g20150 Coffea canephora HOM05D000406 ORTHO05D008572 5.7e-08 60.8 101 39.6
Haze_04803 Corylus avellana HOM05D000406 ORTHO05D008572 5.7e-08 60.8 107 39.3
Migut.D00233 Erythranthe guttata HOM05D000406 ORTHO05D008572 9.8e-08 60.1 82 43.9
Gohir.A08G044200 Gossypium hirsutum HOM05D000406 ORTHO05D008572 1.3e-07 59.7 101 43.6
Gohir.D08G053900 Gossypium hirsutum HOM05D000406 ORTHO05D008572 1.3e-07 59.7 101 43.6
Gorai.004G054200 Gossypium raimondii HOM05D000406 ORTHO05D008572 1.3e-07 59.7 101 43.6
RcHm_v2.0_Chr6g0292471 Rosa chinensis HOM05D000406 ORTHO05D008572 1.3e-07 59.7 82 43.9
SalBow3G3807 Salvia bowleyana HOM05D000406 ORTHO05D008572 1.3e-07 59.7 119 37.8
SEGI_03304 Sequoiadendron giganteum HOM05D000406 ORTHO05D008572 1.7e-07 59.3 101 40.6
THA.LOC104815951 Tarenaya hassleriana HOM05D000406 ORTHO05D008572 2.2e-07 58.9 101 39.6
EL10Ac7g17362 Beta vulgaris HOM05D000406 ORTHO05D008572 2.8e-07 58.5 101 41.6
Lsat_1_v5_gn_9_5181 Lactuca sativa HOM05D000406 ORTHO05D008572 2.8e-07 58.5 82 43.9
PGR119G1441 Punica granatum HOM05D000406 ORTHO05D008572 2.8e-07 58.5 99 40.4
DCAR_012431 Daucus carota HOM05D000406 ORTHO05D008572 3.7e-07 58.2 87 42.5
unitig_61.g26315 Utricularia gibba HOM05D000406 ORTHO05D008572 3.7e-07 58.2 101 37.6
VMungo0720G1059 Vigna mungo HOM05D000406 ORTHO05D008572 3.7e-07 58.2 101 39.6
CDE12G0031 Ceratophyllum demersum HOM05D000406 ORTHO05D008572 4.9e-07 57.8 104 41.3
Duzib211G0063 Durio zibethinus HOM05D000406 ORTHO05D008572 4.9e-07 57.8 101 41.6
Oeu022803.1 Olea europaea HOM05D000406 ORTHO05D008572 4.9e-07 57.8 101 38.6
Phvul.007G166800 Phaseolus vulgaris HOM05D000406 ORTHO05D008572 4.9e-07 57.8 101 39.6
Ah.08g212730 Amaranthus hybridus HOM05D002556 ORTHO05D008572 8.3e-07 57.0 103 38.8
AUR62034607 Chenopodium quinoa HOM05D000406 ORTHO05D008572 8.3e-07 57.0 104 40.4
Thecc.01G289700 Theobroma cacao HOM05D000406 ORTHO05D008572 8.3e-07 57.0 101 39.6
BcaC03g16208 Brassica carinata HOM05D000406 ORTHO05D008572 3.1e-06 55.1 76 42.1
BolC2t10012H Brassica oleracea HOM05D000406 ORTHO05D008572 3.1e-06 55.1 76 42.1
Aa31LG5G2640 Aethionema arabicum HOM05D000406 ORTHO05D008572 5.4e-06 54.3 82 41.5
C02p39860 Brassica napus HOM05D000406 ORTHO05D008572 7.0e-06 53.9 76 40.8
Carub.0006s3394 Capsella rubella HOM05D000406 ORTHO05D008572 7.0e-06 53.9 82 40.2
Thhalv10028818m.g Eutrema salsugineum HOM05D000406 ORTHO05D008572 7.0e-06 53.9 82 40.2
Sp6g03150 Schrenkiella parvula HOM05D000406 ORTHO05D008572 7.0e-06 53.9 82 40.2


User provided reference genes

Program Settings