Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 1.1e-170 603.2 293 100.0
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 5.5e-143 511.1 291 85.9
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 3.3e-132 475.3 286 80.8
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 2.6e-92 342.8 307 58.3
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 8.3e-83 311.2 296 55.1
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 4.1e-82 308.9 295 53.2
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 2.7e-81 306.2 292 53.8
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 6.6e-80 301.6 298 53.0
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.2e-78 297.4 286 55.2
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 2.1e-78 296.6 299 51.2
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 2.8e-78 296.2 303 51.5
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 3.6e-78 295.8 297 52.9
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 4.7e-78 295.4 287 52.6
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 1.4e-77 293.9 286 52.4
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.8e-77 293.5 285 52.3
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 4.4e-76 288.9 303 49.8
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 1.7e-75 287.0 282 52.5
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.1e-74 284.3 299 49.5
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 3.2e-74 282.7 305 52.1
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 3.2e-74 282.7 313 49.8
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 5.4e-74 282.0 294 50.0
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 1.2e-73 280.8 286 52.4
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 3.5e-73 279.3 285 50.9
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 3.5e-73 279.3 295 50.8
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 3.5e-73 279.3 291 51.5
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 3.9e-72 275.8 315 49.2
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 2.5e-71 273.1 291 48.1
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 4.3e-71 272.3 294 48.6
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 5.6e-71 271.9 290 49.7
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 7.3e-71 271.6 295 48.1
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 1.6e-70 270.4 295 48.1
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 3.6e-70 269.2 292 48.6
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 4.7e-70 268.9 333 45.9
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 6.2e-70 268.5 294 49.7
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 8.1e-70 268.1 268 54.5
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 8.1e-70 268.1 268 54.5
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.8e-69 266.9 292 48.6
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 2.3e-69 266.5 296 49.0
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 2.3e-69 266.5 275 49.8
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 5.2e-69 265.4 285 49.5
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 6.8e-69 265.0 295 47.8
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.2e-68 264.2 268 53.7
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.0e-68 263.5 268 53.7
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.6e-68 263.1 268 53.7
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 4.4e-68 262.3 261 54.4
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 9.9e-68 261.2 288 50.0
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 9.9e-68 261.2 295 49.5
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 2.2e-67 260.0 295 48.5
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 2.2e-67 260.0 296 49.0
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 2.2e-67 260.0 285 49.8
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 8.3e-67 258.1 294 46.3
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 2.4e-66 256.5 292 49.7
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 5.4e-66 255.4 294 46.9
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 7.1e-66 255.0 294 46.6
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.6e-65 253.8 300 49.0
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.0e-64 251.1 294 44.9
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.3e-64 250.8 292 46.6
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 2.3e-64 250.0 305 45.6
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 1.5e-63 247.3 259 51.4
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 1.5e-63 247.3 305 45.9
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.6e-62 243.8 292 43.8
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 2.8e-62 243.0 288 46.5
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 2.8e-62 243.0 291 45.7
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.8e-61 240.4 218 56.9
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 3.1e-61 239.6 268 49.3
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 4.0e-61 239.2 288 47.9
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 6.8e-61 238.4 289 46.7
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 1.1e-58 231.1 295 43.4
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 2.4e-58 229.9 281 43.4
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 5.4e-58 228.8 299 42.5
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.2e-57 227.6 294 43.5
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 4.6e-57 225.7 284 42.6
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 2.1e-54 216.9 281 43.4
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 2.8e-54 216.5 281 43.4
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 3.6e-54 216.1 272 44.9
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 4.0e-53 212.6 282 45.0
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 1.2e-52 211.1 282 44.7
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.2e-52 211.1 280 42.9
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 5.8e-52 208.8 204 54.4
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 2.9e-51 206.5 333 38.7
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 4.9e-51 205.7 226 49.6
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 6.4e-51 205.3 307 38.4
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 8.4e-51 204.9 308 40.6
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 1.4e-50 204.1 213 51.6
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 1.2e-49 201.1 286 42.3
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 3.1e-45 186.4 141 66.0
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 4.0e-45 186.0 285 40.4
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 1.1e-42 177.9 237 39.2
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.4e-42 176.8 196 49.0
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 3.2e-42 176.4 225 45.3
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 7.1e-42 175.3 195 48.2
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 9.3e-42 174.9 213 45.5
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 1.6e-41 174.1 286 37.4
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 1.0e-40 171.4 199 43.7
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.6e-38 164.1 237 42.2
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 6.2e-38 162.2 224 42.9
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 4.5e-36 156.0 222 40.5
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 1.0e-35 154.8 295 34.2
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 2.2e-35 153.7 192 41.7
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 2.9e-35 153.3 288 33.7
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.5e-33 146.4 280 31.4
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 3.0e-32 143.3 277 34.7
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 5.7e-31 139.0 218 37.6
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 3.7e-30 136.3 81 87.7
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 3.7e-30 136.3 81 87.7
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 8.2e-30 135.2 161 44.1
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 3.4e-28 129.8 95 71.6
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 5.8e-28 129.0 251 31.5
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 5.8e-28 129.0 137 45.3
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 1.7e-27 127.5 189 40.7
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 2.2e-27 127.1 89 70.8
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.3e-24 117.9 109 55.0
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.5e-23 114.4 111 56.8
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 5.7e-23 112.5 344 26.2
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 9.7e-23 111.7 110 53.6
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.2e-20 104.8 125 49.6
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.0e-20 104.0 100 48.0
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 2.6e-20 103.6 136 40.4
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 8.5e-19 98.6 300 26.0
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 1.9e-18 97.4 79 67.1
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.1e-15 88.2 66 65.2
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 3.3e-15 86.7 62 66.1
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.3e-14 84.7 62 64.5
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 4.1e-13 79.7 192 30.2
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 9.1e-13 78.6 61 57.4
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 1.9e-10 70.9 51 60.8
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 6.1e-09 65.9 119 33.6


User provided reference genes

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