Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 2.0e-115 419.1 203 100.0
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 2.1e-109 399.1 203 94.1
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 5.2e-108 394.4 203 93.1
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 3.5e-104 381.7 205 90.7
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 2.5e-94 349.0 205 82.0
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 3.3e-94 348.6 205 82.0
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 9.5e-94 347.1 205 81.0
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 2.1e-93 345.9 205 80.0
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.8e-93 345.5 205 81.5
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 3.6e-93 345.1 205 81.0
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.7e-93 344.7 205 81.5
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 8.0e-93 344.0 205 81.0
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 1.0e-92 343.6 203 81.3
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 1.0e-92 343.6 203 81.8
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 1.4e-92 343.2 205 81.5
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 1.4e-92 343.2 205 81.5
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 1.8e-92 342.8 204 80.9
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 3.0e-92 342.0 202 83.2
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 4.0e-92 341.7 207 81.2
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 6.8e-92 340.9 203 79.8
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 4.4e-91 338.2 205 78.0
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 5.7e-91 337.8 206 80.1
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 1.7e-90 336.3 203 79.8
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 2.9e-90 335.5 204 79.9
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 3.7e-90 335.1 205 79.0
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 3.7e-90 335.1 208 78.4
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 4.9e-90 334.7 205 79.5
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 4.9e-90 334.7 207 79.7
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 4.9e-90 334.7 205 79.0
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 6.3e-90 334.3 209 78.5
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 6.3e-90 334.3 169 92.9
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 8.3e-90 334.0 203 77.3
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 8.3e-90 334.0 205 80.0
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 8.3e-90 334.0 202 80.2
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.1e-89 333.6 204 78.9
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 1.1e-89 333.6 204 78.9
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 1.1e-89 333.6 205 78.0
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 1.8e-89 332.8 207 77.8
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 2.4e-89 332.4 206 81.6
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 4.1e-89 331.6 203 77.3
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 4.1e-89 331.6 195 82.1
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 5.4e-89 331.3 207 76.8
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 5.4e-89 331.3 197 80.2
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 7.0e-89 330.9 205 78.5
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 9.2e-89 330.5 202 79.7
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 9.2e-89 330.5 207 79.2
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 1.2e-88 330.1 205 77.6
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 1.6e-88 329.7 205 78.0
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 1.6e-88 329.7 207 76.3
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 2.0e-88 329.3 204 79.4
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 2.0e-88 329.3 201 80.1
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 4.6e-88 328.2 201 78.6
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 5.9e-88 327.8 209 76.1
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 5.9e-88 327.8 205 76.6
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 5.9e-88 327.8 210 75.7
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 5.9e-88 327.8 205 79.0
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 5.9e-88 327.8 205 76.1
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.0e-87 327.0 198 77.8
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 1.7e-87 326.2 209 74.6
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 1.7e-87 326.2 206 75.7
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 1.7e-87 326.2 207 75.8
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 1.7e-87 326.2 204 77.9
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 1.7e-87 326.2 201 77.6
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 2.3e-87 325.9 208 75.5
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 2.3e-87 325.9 207 75.8
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 2.3e-87 325.9 204 77.9
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.9e-87 325.5 198 78.3
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 2.9e-87 325.5 205 78.0
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 3.9e-87 325.1 197 79.2
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 5.0e-87 324.7 207 76.3
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 6.6e-87 324.3 201 77.1
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 6.6e-87 324.3 210 75.2
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 6.6e-87 324.3 197 79.2
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 8.6e-87 323.9 205 79.5
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 8.6e-87 323.9 198 79.8
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 1.1e-86 323.6 198 78.3
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 2.5e-86 322.4 204 75.5
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 2.5e-86 322.4 202 76.7
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 2.5e-86 322.4 201 77.6
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 4.3e-86 321.6 200 78.0
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 2.1e-85 319.3 198 78.8
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 2.8e-85 318.9 197 78.2
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 3.6e-85 318.5 195 78.5
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 6.1e-85 317.8 202 76.7
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 8.0e-85 317.4 217 75.1
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 1.0e-84 317.0 197 76.6
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 1.8e-84 316.2 205 74.6
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 2.3e-84 315.8 204 74.0
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 5.2e-84 314.7 205 77.6
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 6.8e-84 314.3 198 76.3
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 1.5e-83 313.2 193 76.2
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 3.4e-83 312.0 201 75.6
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 3.4e-83 312.0 201 75.6
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 4.4e-83 311.6 198 75.3
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 1.3e-82 310.1 205 74.1
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 1.9e-81 306.2 202 71.8
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 4.1e-81 305.1 198 73.7
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 7.0e-81 304.3 205 72.2
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 7.8e-80 300.8 228 64.9
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 4.0e-76 288.5 183 76.0
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 3.7e-74 282.0 197 67.5
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 4.9e-74 281.6 203 70.0
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 7.1e-73 277.7 196 68.4
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 2.3e-71 272.7 199 65.8
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 2.9e-66 255.8 372 42.2
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 4.9e-66 255.0 172 73.8
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 4.1e-65 251.9 203 64.0
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 7.1e-65 251.1 203 63.5
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 8.6e-63 244.2 200 58.5
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 3.3e-62 242.3 196 58.2
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 4.7e-61 238.4 150 78.7
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 9.9e-59 230.7 203 55.7
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 9.9e-59 230.7 202 56.4
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.1e-57 227.3 193 61.1
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 5.4e-57 224.9 182 65.4
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 7.8e-56 221.1 158 67.1
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 3.0e-55 219.2 143 74.1
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 1.9e-46 189.9 125 72.0
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.5e-46 189.5 138 71.0
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 5.6e-46 188.3 141 69.5
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 9.6e-46 187.6 119 75.6
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 1.3e-45 187.2 119 75.6
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.0e-43 179.9 171 57.3
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 6.0e-40 168.3 153 55.6
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 4.8e-37 158.7 97 75.3
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 1.3e-34 150.6 100 75.0
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 4.3e-30 135.6 202 40.6
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 8.2e-29 131.3 205 44.9
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 6.7e-23 111.7 79 69.6
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 1.5e-22 110.5 100 57.0
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 5.7e-22 108.6 75 69.3
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 1.9e-17 93.6 75 65.3
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 2.7e-16 89.7 62 66.1
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 1.3e-13 80.9 59 67.8
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 6.5e-10 68.6 37 86.5
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 1.0e-07 61.2 35 77.1
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 3.0e-07 59.7 40 72.5
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 3.9e-07 59.3 36 77.8


User provided reference genes

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