Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 4.7e-61 237.7 119 100.0
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 9.3e-41 170.2 127 71.7
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 3.5e-40 168.3 119 72.3
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 1.3e-39 166.4 127 70.9
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 3.3e-38 161.8 124 71.8
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 1.6e-24 116.3 125 53.6
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 2.3e-23 112.5 125 54.4
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 9.7e-22 107.1 122 50.8
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 2.8e-21 105.5 124 50.0
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 6.3e-21 104.4 120 49.2
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 8.2e-21 104.0 103 55.3
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 1.1e-20 103.6 125 49.6
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 1.4e-20 103.2 124 48.4
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 1.4e-20 103.2 119 49.6
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 1.4e-20 103.2 119 49.6
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 1.8e-20 102.8 123 48.8
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 5.3e-20 101.3 92 56.5
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 9.0e-20 100.5 121 47.9
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 7.7e-19 97.4 103 51.5
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 3.8e-18 95.1 119 52.1
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 5.0e-18 94.7 117 47.9
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 1.1e-17 93.6 104 53.8
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 1.1e-17 93.6 120 45.8
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 2.5e-17 92.4 118 50.8
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 5.5e-17 91.3 122 44.3
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 5.5e-17 91.3 97 52.6
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 5.5e-17 91.3 120 45.0
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 5.5e-17 91.3 120 45.0
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 2.7e-16 89.0 120 46.7
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 3.6e-16 88.6 100 49.0
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 4.6e-16 88.2 94 51.1
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 6.1e-16 87.8 64 67.2
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 6.1e-16 87.8 71 62.0
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 7.9e-16 87.4 94 52.1
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 7.9e-16 87.4 106 48.1
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 7.9e-16 87.4 70 62.9
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 1.4e-15 86.7 85 52.9
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 3.0e-15 85.5 103 47.6
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 5.1e-15 84.7 97 52.6
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 6.7e-15 84.3 92 48.9
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 1.1e-14 83.6 99 44.4
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 1.5e-14 83.2 55 67.3
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 2.0e-14 82.8 119 43.7
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 2.0e-14 82.8 126 44.4
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 2.5e-14 82.4 118 45.8
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 3.3e-14 82.0 125 40.8
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 3.3e-14 82.0 89 51.7
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 1.3e-13 80.1 92 44.6
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 2.8e-13 79.0 101 47.5
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 3.7e-13 78.6 79 59.5
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 3.7e-13 78.6 75 56.0
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 4.8e-13 78.2 92 47.8
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 6.9e-12 74.3 105 46.7
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.2e-11 73.6 93 50.5
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.2e-11 73.6 93 50.5
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 1.5e-11 73.2 93 50.5
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 1.5e-11 73.2 48 68.8
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 2.6e-11 72.4 92 46.7
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 2.6e-11 72.4 92 46.7
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 3.4e-11 72.0 127 43.3
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 3.4e-11 72.0 48 68.8
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 5.9e-11 71.2 92 47.8
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 1.7e-10 69.7 93 48.4
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 1.7e-10 69.7 122 41.8
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 1.7e-10 69.7 122 41.8
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 2.2e-10 69.3 66 54.5
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 2.2e-10 69.3 120 43.3
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 2.9e-10 68.9 87 50.6
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 5.0e-10 68.2 95 43.2
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 6.5e-10 67.8 121 38.8
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 2.5e-09 65.9 111 45.9
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 3.2e-09 65.5 93 49.5
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 3.6e-08 62.0 121 35.5
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 7.9e-08 60.8 45 66.7
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 7.9e-08 60.8 45 66.7
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 1.0e-07 60.5 123 38.2
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 3.0e-07 58.9 97 42.3
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 2.6e-06 55.8 49 55.1
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 3.3e-06 55.5 105 37.1


User provided reference genes

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