Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 5.3e-40 167.2 80 100.0
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 3.7e-17 91.3 92 58.7
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.4e-16 89.4 81 59.3
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.2e-14 82.0 84 48.8
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 4.7e-12 74.3 86 47.7
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 1.8e-11 72.4 88 44.3
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 2.3e-11 72.0 85 51.8
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 2.3e-11 72.0 90 44.4
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 6.7e-11 70.5 79 44.3
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 1.1e-10 69.7 38 71.1
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 2.0e-10 68.9 85 45.9
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.0e-10 68.9 89 38.2
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 3.3e-10 68.2 39 71.8
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 3.3e-10 68.2 79 41.8
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 3.3e-10 68.2 97 39.2
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 3.3e-10 68.2 97 39.2
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 3.3e-10 68.2 97 39.2
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.3e-10 68.2 38 71.1
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.3e-10 68.2 38 71.1
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 3.3e-10 68.2 81 43.2
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 5.7e-10 67.4 38 68.4
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 7.5e-10 67.0 83 47.0
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 9.7e-10 66.6 80 48.8
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 9.7e-10 66.6 38 71.1
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.7e-09 65.9 37 73.0
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 1.7e-09 65.9 89 37.1
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 2.2e-09 65.5 88 37.5
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 2.2e-09 65.5 79 39.2
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 2.2e-09 65.5 38 63.2
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 2.2e-09 65.5 94 40.4
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 2.8e-09 65.1 49 55.1
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 2.8e-09 65.1 37 73.0
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 3.7e-09 64.7 80 43.8
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 3.7e-09 64.7 89 42.7
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 4.8e-09 64.3 43 55.8
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 4.8e-09 64.3 41 63.4
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 4.8e-09 64.3 80 46.2
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 4.8e-09 64.3 38 65.8
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 4.8e-09 64.3 38 65.8
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 4.8e-09 64.3 40 62.5
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 4.8e-09 64.3 90 41.1
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 6.3e-09 63.9 53 52.8
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 6.3e-09 63.9 93 47.3
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.3e-09 63.9 37 67.6
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.3e-09 63.9 73 41.1
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.3e-09 63.9 37 67.6
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 6.3e-09 63.9 38 63.2
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 6.3e-09 63.9 86 38.4
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 8.2e-09 63.5 43 53.5
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 8.2e-09 63.5 86 38.4
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 8.2e-09 63.5 80 42.5
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 8.2e-09 63.5 35 68.6
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 8.2e-09 63.5 47 53.2
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 8.2e-09 63.5 36 69.4
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 8.2e-09 63.5 47 61.7
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 8.2e-09 63.5 43 60.5
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 8.2e-09 63.5 43 60.5
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 8.2e-09 63.5 80 40.0
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.1e-08 63.2 36 69.4
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.1e-08 63.2 38 68.4
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 1.1e-08 63.2 87 44.8
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.1e-08 63.2 43 58.1
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.8e-08 62.4 37 62.2
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.8e-08 62.4 37 62.2
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 1.8e-08 62.4 36 63.9
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.4e-08 62.0 38 60.5
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.1e-08 61.6 39 59.0
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.1e-08 61.6 39 59.0
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.1e-08 61.6 39 59.0
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.1e-08 61.6 37 62.2
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 3.1e-08 61.6 38 63.2
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 4.1e-08 61.2 82 46.3
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 4.1e-08 61.2 79 39.2
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.1e-08 61.2 37 64.9
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.1e-08 61.2 37 64.9
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 4.1e-08 61.2 94 39.4
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 5.3e-08 60.8 92 40.2
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 5.3e-08 60.8 37 59.5
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 5.3e-08 60.8 39 59.0
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 5.3e-08 60.8 47 57.4
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 7.0e-08 60.5 77 40.3
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 7.0e-08 60.5 37 62.2
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 7.0e-08 60.5 37 62.2
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 7.0e-08 60.5 36 61.1
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 7.0e-08 60.5 34 67.6
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 9.1e-08 60.1 40 62.5
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 9.1e-08 60.1 47 55.3
Lj3g0024349 Lotus japonicus HOM05D003654 ORTHO05D004176 9.1e-08 60.1 83 45.8
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 1.2e-07 59.7 93 37.6
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 1.2e-07 59.7 33 72.7
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 1.2e-07 59.7 43 55.8
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.2e-07 59.7 33 72.7
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 1.2e-07 59.7 33 72.7
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.6e-07 59.3 92 39.1
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.6e-07 59.3 92 39.1
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.6e-07 59.3 36 61.1
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 2.0e-07 58.9 92 39.1
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 2.0e-07 58.9 91 37.4
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.0e-07 58.9 38 57.9
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 2.0e-07 58.9 37 64.9
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 2.7e-07 58.5 95 42.1
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 2.7e-07 58.5 36 63.9
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.7e-07 58.5 80 38.8
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.7e-07 58.5 58 48.3
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.7e-07 58.5 35 68.6
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.7e-07 58.5 35 65.7
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.7e-07 58.5 33 72.7
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 4.5e-07 57.8 38 60.5
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 4.5e-07 57.8 37 59.5
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 5.9e-07 57.4 93 40.9
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 5.9e-07 57.4 86 38.4
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 7.7e-07 57.0 82 39.0
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 7.7e-07 57.0 91 40.7
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.7e-07 57.0 31 71.0
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 7.7e-07 57.0 39 61.5
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 7.7e-07 57.0 38 60.5
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 1.0e-06 56.6 91 39.6
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 1.0e-06 56.6 40 62.5
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.3e-06 56.2 84 42.9
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 1.3e-06 56.2 33 63.6
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.3e-06 56.2 33 66.7
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 1.7e-06 55.8 37 62.2
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 2.2e-06 55.5 79 41.8
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 2.2e-06 55.5 32 65.6
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 2.9e-06 55.1 97 35.1
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 2.9e-06 55.1 36 61.1
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 3.8e-06 54.7 93 36.6
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 3.8e-06 54.7 88 43.2
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 5.0e-06 54.3 37 56.8
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 5.0e-06 54.3 97 35.1
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 5.0e-06 54.3 86 34.9
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 6.5e-06 53.9 37 59.5
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 8.5e-06 53.5 31 67.7
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 8.5e-06 53.5 79 34.2
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 8.5e-06 53.5 37 51.4


User provided reference genes

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