Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 1.5e-93 346.3 189 100.0
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 1.4e-70 270.0 190 72.1
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 1.5e-69 266.5 189 82.0
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 5.4e-67 258.1 189 80.4
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 8.6e-65 250.8 188 74.5
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 2.0e-37 159.8 219 44.3
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 7.6e-37 157.9 207 40.6
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 2.9e-36 156.0 199 45.2
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 3.8e-36 155.6 195 41.5
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 6.4e-36 154.8 207 45.4
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.9e-35 153.3 211 41.7
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 3.2e-35 152.5 205 42.9
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 3.2e-35 152.5 205 42.9
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 7.1e-35 151.4 192 43.8
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 9.3e-35 151.0 192 43.8
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 9.3e-35 151.0 201 45.3
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 2.1e-34 149.8 195 43.1
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 2.1e-34 149.8 99 67.7
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 2.1e-34 149.8 213 41.3
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 2.7e-34 149.4 99 66.7
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 3.5e-34 149.1 86 74.4
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 4.6e-34 148.7 220 42.3
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 4.6e-34 148.7 201 43.8
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.0e-33 147.5 99 63.6
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 1.3e-33 147.1 203 42.9
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 2.3e-33 146.4 199 45.2
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.0e-33 146.0 99 62.6
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 3.0e-33 146.0 99 62.6
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 5.1e-33 145.2 99 62.6
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 6.6e-33 144.8 221 40.7
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 6.6e-33 144.8 216 40.3
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 8.7e-33 144.4 214 44.4
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 1.5e-32 143.7 204 41.2
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 3.3e-32 142.5 209 39.2
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 4.3e-32 142.1 206 42.7
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 5.6e-32 141.7 209 40.7
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.3e-31 140.6 86 70.9
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 2.1e-31 139.8 205 38.5
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.1e-31 139.8 113 58.4
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 2.8e-31 139.4 92 67.4
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 3.6e-31 139.0 186 40.9
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 6.2e-31 138.3 100 63.0
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 6.2e-31 138.3 197 42.1
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 8.1e-31 137.9 123 54.5
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.4e-30 137.1 223 36.8
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 1.4e-30 137.1 86 72.1
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 1.8e-30 136.7 86 65.1
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 3.1e-30 136.0 207 39.1
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 9.0e-30 134.4 93 65.6
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 2.0e-29 133.3 184 43.5
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 2.0e-29 133.3 99 60.6
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 2.6e-29 132.9 190 42.1
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 3.4e-29 132.5 122 54.9
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 4.5e-29 132.1 192 41.7
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 5.8e-29 131.7 99 57.6
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 9.9e-29 131.0 99 59.6
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 9.9e-29 131.0 99 60.6
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 1.7e-28 130.2 86 67.4
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 2.2e-28 129.8 184 37.5
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 2.2e-28 129.8 86 70.9
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 3.8e-28 129.0 84 66.7
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 4.9e-28 128.6 189 41.3
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.9e-28 128.6 84 66.7
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 4.9e-28 128.6 84 69.0
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 4.9e-28 128.6 191 38.2
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 4.9e-28 128.6 84 70.2
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 6.4e-28 128.3 197 38.1
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.4e-27 127.1 84 65.5
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.4e-27 127.1 86 69.8
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.9e-27 126.7 87 66.7
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.4e-27 126.3 84 65.5
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 3.2e-27 125.9 86 66.3
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 4.2e-27 125.6 99 55.6
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 5.4e-27 125.2 97 57.7
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 5.4e-27 125.2 86 64.0
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 5.4e-27 125.2 84 66.7
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 9.3e-27 124.4 86 64.0
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.3e-27 124.4 86 62.8
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.3e-27 124.4 86 62.8
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.3e-27 124.4 86 62.8
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 9.3e-27 124.4 86 65.1
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.2e-26 124.0 210 46.7
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 1.6e-26 123.6 86 65.1
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 1.6e-26 123.6 86 65.1
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 2.1e-26 123.2 211 43.1
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 2.1e-26 123.2 86 64.0
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.1e-26 123.2 86 65.1
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 2.1e-26 123.2 86 64.0
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 2.7e-26 122.9 86 65.1
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 2.7e-26 122.9 86 64.0
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 2.7e-26 122.9 86 66.3
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 4.6e-26 122.1 220 37.7
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.6e-26 122.1 84 63.1
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 6.0e-26 121.7 86 62.8
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 6.0e-26 121.7 86 62.8
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 3.9e-25 119.0 86 60.5
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.7e-25 117.9 86 60.5
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 8.7e-25 117.9 99 58.6
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 7.4e-24 114.8 198 35.4
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 3.7e-23 112.5 84 59.5
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 1.1e-22 110.9 84 59.5
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 1.1e-22 110.9 84 59.5
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 1.4e-22 110.5 84 58.3
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 1.4e-22 110.5 84 58.3
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 1.4e-22 110.5 223 32.3
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 1.8e-22 110.2 126 45.2
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.6e-21 106.3 200 33.5
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 3.4e-21 105.9 99 53.5
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 4.5e-21 105.5 99 53.5
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 4.5e-21 105.5 99 53.5
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 5.8e-21 105.1 90 51.1
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.9e-20 102.8 186 35.5
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 3.8e-20 102.4 86 57.0
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 3.8e-20 102.4 86 55.8
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 3.8e-20 102.4 86 55.8
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 6.4e-20 101.7 86 55.8
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 6.4e-20 101.7 86 55.8
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 1.1e-19 100.9 86 55.8
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 1.1e-19 100.9 86 55.8
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.4e-19 100.5 200 32.0
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 5.5e-19 98.6 86 53.5
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 5.5e-19 98.6 103 45.6
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 7.1e-19 98.2 197 35.5
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 7.1e-19 98.2 103 44.7
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 9.3e-19 97.8 86 54.7
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.2e-18 97.4 90 52.2
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 2.7e-18 96.3 86 52.3
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 3.5e-18 95.9 86 51.2
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 6.0e-18 95.1 193 33.2
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 1.0e-17 94.4 86 52.3
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.3e-17 94.0 120 43.3
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 1.8e-17 93.6 75 56.0
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 2.3e-17 93.2 86 52.3
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 2.3e-17 93.2 86 51.2
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 2.3e-17 93.2 86 51.2
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 2.3e-17 93.2 80 56.2
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 3.0e-17 92.8 86 53.5
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 3.0e-17 92.8 199 34.2
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 3.0e-17 92.8 86 51.2
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 3.9e-17 92.4 86 50.0
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 3.9e-17 92.4 86 52.3
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 3.9e-17 92.4 86 52.3
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 3.9e-17 92.4 86 50.0
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 5.1e-17 92.0 86 50.0
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 5.1e-17 92.0 86 50.0
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 6.7e-17 91.7 136 40.4
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 3.3e-16 89.4 80 55.0
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 5.6e-16 88.6 209 32.1
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 9.6e-16 87.8 86 50.0
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 2.1e-15 86.7 86 51.2
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 8.2e-15 84.7 76 52.6
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 1.8e-14 83.6 181 41.4
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 3.1e-14 82.8 116 40.5
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 9.0e-14 81.3 83 47.0
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 4.5e-13 79.0 122 40.2
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 4.9e-12 75.5 71 49.3
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 3.2e-11 72.8 121 39.7
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 3.2e-11 72.8 86 47.7
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 4.2e-11 72.4 53 66.0
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 7.9e-10 68.2 184 31.5
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 3.9e-09 65.9 121 36.4
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.5e-08 63.9 121 36.4
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 1.9e-08 63.5 87 43.7
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 7.4e-08 61.6 188 29.8
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 1.6e-07 60.5 197 28.9
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 1.1e-06 57.8 51 58.8
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 2.4e-06 56.6 187 29.9
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 6.9e-06 55.1 186 28.5
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 6.9e-06 55.1 87 41.4


User provided reference genes

Program Settings