Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005335 Sechium edule HOM05D007018 ORTHO05D008887 2.7e-100 368.6 183 100.0
MELO3C017041.2 Cucumis melo HOM05D007018 ORTHO05D008887 2.3e-91 339.0 183 92.3
CsaV3_4G037440 Cucumis sativus L. HOM05D007018 ORTHO05D008887 8.3e-89 330.5 183 89.6
ClCG11G018850 Citrullus lanatus HOM05D007018 ORTHO05D008887 1.5e-85 319.7 183 88.0
QL02p015150 Quercus lobata HOM05D007018 ORTHO05D008887 3.4e-74 282.0 183 76.5
CANSAT25G2394 Cannabis sativa HOM05D007018 ORTHO05D008887 4.9e-73 278.1 186 76.3
CiPaw.08G075600 Carya illinoinensis HOM05D007018 ORTHO05D008887 1.4e-72 276.6 185 75.7
Haze_22833 Corylus avellana HOM05D007018 ORTHO05D008887 4.1e-72 275.0 184 75.5
Nn5g31007 Nelumbo nucifera HOM05D007018 ORTHO05D008887 9.2e-72 273.9 173 76.9
Potri.005G253600 Populus trichocarpa HOM05D007018 ORTHO05D008887 4.6e-71 271.6 183 74.3
Dinv31968 Davidia involucrata HOM05D007018 ORTHO05D008887 6.0e-71 271.2 182 76.4
Actinidia17062 Actinidia chinensis HOM05D007018 ORTHO05D008887 2.3e-70 269.2 185 75.7
GSVIVG01013398001 Vitis vinifera HOM05D007018 ORTHO05D008887 2.3e-70 269.2 182 75.8
CSS0014140 Camellia sinensis var. sinensis HOM05D007018 ORTHO05D008887 3.9e-70 268.5 183 74.3
Sabra05G0196700 Salix brachista HOM05D007018 ORTHO05D008887 6.6e-70 267.7 186 72.6
TAR625G1418 Trochodendron aralioides HOM05D007018 ORTHO05D008887 1.9e-69 266.2 180 72.2
SGA_v2.0_scaffold366G50030 Striga asiatica HOM05D007018 ORTHO05D008887 4.3e-69 265.0 179 73.2
TAR633G0270 Trochodendron aralioides HOM05D007018 ORTHO05D008887 1.2e-68 263.5 180 71.7
Aqoxy6G01596 Aquilegia oxysepala HOM05D007018 ORTHO05D008887 4.7e-68 261.5 188 70.7
TWI36G0062 Tripterygium wilfordii HOM05D007018 ORTHO05D008887 4.7e-68 261.5 188 72.9
Sabra02G0005900 Salix brachista HOM05D007018 ORTHO05D008887 1.1e-67 260.4 184 70.7
DCAR_022937 Daucus carota HOM05D007018 ORTHO05D008887 1.4e-67 260.0 170 75.3
RcHm_v2.0_Chr7g0215941 Rosa chinensis HOM05D007018 ORTHO05D008887 1.4e-67 260.0 164 78.7
Ciclev10002616m.g Citrus clementina HOM05D007018 ORTHO05D008887 2.3e-67 259.2 170 74.7
Hma1.2p1_0699F.1_g205550 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 2.3e-67 259.2 180 71.7
Migut.C00367 Erythranthe guttata HOM05D007018 ORTHO05D008887 6.8e-67 257.7 177 71.2
Sc26g0004680 Simmondsia chinensis HOM05D007018 ORTHO05D008887 6.8e-67 257.7 186 71.0
Prupe.5G008700 Prunus persica HOM05D007018 ORTHO05D008887 1.5e-66 256.5 178 73.6
Atru.chr13.101 Acer truncatum HOM05D007018 ORTHO05D008887 5.8e-66 254.6 175 72.0
MSTRG.993 Avicennia marina HOM05D007018 ORTHO05D008887 5.8e-66 254.6 179 72.1
Lj4A809G49 Lonicera japonica HOM05D007018 ORTHO05D008887 1.3e-65 253.4 167 76.6
PSO541G4149 Papaver somniferum HOM05D007018 ORTHO05D008887 3.7e-65 251.9 182 68.7
VMungo1309G2102 Vigna mungo HOM05D007018 ORTHO05D008887 3.7e-65 251.9 176 72.2
FAN04G0342 Fragaria x ananassa HOM05D007018 ORTHO05D008887 6.4e-65 251.1 173 72.8
FAN18G2290 Fragaria x ananassa HOM05D007018 ORTHO05D008887 8.3e-65 250.8 183 71.0
Rhsim06G0005000 Rhododendron simsii HOM05D007018 ORTHO05D008887 8.3e-65 250.8 178 71.3
FAN13G0505 Fragaria x ananassa HOM05D007018 ORTHO05D008887 1.1e-64 250.4 173 72.8
Eucgr.F01791 Eucalyptus grandis HOM05D007018 ORTHO05D008887 1.9e-64 249.6 180 68.3
FvH4_5g25650 Fragaria vesca HOM05D007018 ORTHO05D008887 1.9e-64 249.6 183 70.5
CAN.G311.135 Capsicum annuum HOM05D007018 ORTHO05D008887 3.2e-64 248.8 167 72.5
FAN08G2873 Fragaria x ananassa HOM05D007018 ORTHO05D008887 3.2e-64 248.8 173 72.3
Glyma.06G016200 Glycine max HOM05D007018 ORTHO05D008887 3.2e-64 248.8 177 72.3
Duzib093G1136 Durio zibethinus HOM05D007018 ORTHO05D008887 5.4e-64 248.1 179 69.3
Gohir.D01G088700 Gossypium hirsutum HOM05D007018 ORTHO05D008887 5.4e-64 248.1 171 71.9
Phvul.009G006300 Phaseolus vulgaris HOM05D007018 ORTHO05D008887 7.0e-64 247.7 176 71.6
Gohir.A01G103400 Gossypium hirsutum HOM05D007018 ORTHO05D008887 2.7e-63 245.7 171 71.9
HanXRQChr08g0216381 Helianthus annuus HOM05D007018 ORTHO05D008887 2.7e-63 245.7 167 72.5
Lalb_Chr11g0061471 Lupinus albus HOM05D007018 ORTHO05D008887 2.7e-63 245.7 177 71.8
PGR083G2064 Punica granatum HOM05D007018 ORTHO05D008887 2.7e-63 245.7 179 70.9
Lsat_1_v5_gn_8_27360 Lactuca sativa HOM05D007018 ORTHO05D008887 6.0e-63 244.6 171 70.8
MD06G1006600 Malus domestica HOM05D007018 ORTHO05D008887 7.8e-63 244.2 169 72.8
Gorai.002G114400 Gossypium raimondii HOM05D007018 ORTHO05D008887 1.0e-62 243.8 171 71.3
Cc04_g01910 Coffea canephora HOM05D007018 ORTHO05D008887 1.3e-62 243.4 179 69.8
TPR.G38107 Trifolium pratense HOM05D007018 ORTHO05D008887 3.9e-62 241.9 183 68.3
CDE05G1284 Ceratophyllum demersum HOM05D007018 ORTHO05D008887 5.0e-62 241.5 160 73.8
ECA233G6114 Erigeron canadensis HOM05D000716 ORTHO05D002658 6.6e-62 241.1 177 67.2
Lj1g0008636 Lotus japonicus HOM05D007018 ORTHO05D008887 6.6e-62 241.1 170 71.2
Thhalv10004993m.g Eutrema salsugineum HOM05D007018 ORTHO05D008887 7.3e-61 237.7 171 66.7
PGSC0003DMG400009913 Solanum tuberosum HOM05D007018 ORTHO05D008887 1.2e-60 236.9 167 70.1
unitig_749.g13890 Utricularia gibba HOM05D007018 ORTHO05D008887 1.2e-60 236.9 180 65.0
CARHR292440 Cardamine hirsuta HOM05D007018 ORTHO05D008887 2.1e-60 236.1 174 64.9
Medtr3g115880 Medicago truncatula HOM05D007018 ORTHO05D008887 2.8e-60 235.7 168 69.6
Sopen04g036220 Solanum pennellii HOM05D007018 ORTHO05D008887 4.7e-60 235.0 157 72.6
Peaxi162Scf00680g00121 Petunia axillaris HOM05D007018 ORTHO05D008887 2.3e-59 232.6 181 64.6
Sp1g32030 Schrenkiella parvula HOM05D007018 ORTHO05D008887 3.1e-59 232.3 147 72.8
Solyc04g082590.3 Solanum lycopersicum HOM05D007018 ORTHO05D008887 4.0e-59 231.9 174 66.7
vmacro21785 Vaccinium macrocarpon HOM05D007018 ORTHO05D008887 5.2e-59 231.5 242 53.3
arahy.Tifrunner.gnm1.ann1.R1PR4F Arachis hypogaea HOM05D007018 ORTHO05D008887 6.8e-59 231.1 181 65.7
arahy.Tifrunner.gnm1.ann1.UKS4G3 Arachis hypogaea HOM05D007018 ORTHO05D008887 2.0e-58 229.6 178 65.2
Psat5g009640 Pisum sativum HOM05D007018 ORTHO05D008887 2.6e-58 229.2 161 71.4
AT1G42480 Arabidopsis thaliana HOM05D007018 ORTHO05D008887 5.8e-58 228.0 175 62.9
A08p07720 Brassica napus HOM05D007018 ORTHO05D008887 7.5e-58 227.6 162 66.0
BraA08t32785Z Brassica rapa HOM05D007018 ORTHO05D008887 7.5e-58 227.6 162 66.0
BcaB04g17781 Brassica carinata HOM05D007018 ORTHO05D008887 9.9e-58 227.3 147 70.7
BcaC07g37460 Brassica carinata HOM05D007018 ORTHO05D008887 1.7e-57 226.5 162 65.4
C08p09340 Brassica napus HOM05D007018 ORTHO05D008887 1.7e-57 226.5 162 65.4
BolC8t47779H Brassica oleracea HOM05D007018 ORTHO05D008887 2.2e-57 226.1 162 65.4
AL1G51350 Arabidopsis lyrata HOM05D007018 ORTHO05D008887 2.9e-57 225.7 166 64.5
Carub.0001s3428 Capsella rubella HOM05D007018 ORTHO05D008887 2.9e-57 225.7 164 65.2
THA.LOC104806916 Tarenaya hassleriana HOM05D007018 ORTHO05D008887 3.7e-57 225.3 166 65.1
Manes.18G003600 Manihot esculenta HOM05D007018 ORTHO05D008887 6.4e-57 224.6 181 65.2
Hma1.2p1_0699F.1_g205540 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 7.1e-56 221.1 144 76.4
HPP92_012484 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.7e-55 219.2 166 66.3
ATR0807G118 Amborella trichopoda HOM05D007018 ORTHO05D008887 3.5e-55 218.8 143 75.5
Aa31sc108G20 Aethionema arabicum HOM05D007018 ORTHO05D008887 2.3e-54 216.1 166 63.3
Actinidia15510 Actinidia chinensis HOM05D007018 ORTHO05D008887 1.1e-53 213.8 136 79.4
SalBow7G2934 Salvia bowleyana HOM05D007018 ORTHO05D008887 8.1e-52 207.6 128 78.9
Thecc.08G062700 Theobroma cacao HOM05D007018 ORTHO05D008887 5.2e-51 204.9 131 76.3
Os02g0117200 Oryza sativa ssp. japonica HOM05D007018 ORTHO05D008887 4.4e-50 201.8 176 58.5
Manes.13G069000 Manihot esculenta HOM05D007018 ORTHO05D008887 9.9e-50 200.7 135 73.3
Zm00001eb209390 Zea mays HOM05D007018 ORTHO05D008887 1.3e-49 200.3 173 60.7
COL.COLO4_37754 Corchorus olitorius HOM05D007018 ORTHO05D008887 1.6e-47 193.4 136 69.9
AUR62035144 Chenopodium quinoa HOM05D007018 ORTHO05D008887 6.2e-44 181.4 177 57.1
Ca_15400_v3 Cicer arietinum L. HOM05D007018 ORTHO05D008887 2.6e-42 176.0 125 67.2
Pp3c3_21490 Physcomitrium patens HOM05D007018 ORTHO05D008887 2.2e-41 172.9 186 51.1
EL10Ac1g01910 Beta vulgaris HOM05D007018 ORTHO05D008887 7.8e-39 164.5 147 61.2
Nitab4.5_0009646g0030 Nicotiana tabacum HOM05D007018 ORTHO05D008887 7.8e-39 164.5 181 50.3
AUR62042577 Chenopodium quinoa HOM05D007018 ORTHO05D008887 2.5e-37 159.5 156 56.4
HPP92_001689 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.4e-35 152.9 163 47.2
Glyma.04G016200 Glycine max HOM05D007018 ORTHO05D008887 5.6e-29 131.7 101 69.3
Cre16.g661700 Chlamydomonas reinhardtii HOM05D007018 ORTHO05D008887 7.4e-29 131.3 169 45.0
Prupe.5G008600 Prunus persica HOM05D007018 ORTHO05D008887 7.4e-29 131.3 82 74.4
Hund05090 Selenicereus undatus HOM05D007018 ORTHO05D008887 5.8e-26 121.7 127 52.0
Hma1.2p1_0699F.1_g205580 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 4.9e-25 118.6 87 67.8
MCO14G410 Micromonas commoda HOM05D007018 ORTHO05D008887 6.0e-23 111.7 159 37.1
AUR62042580 Chenopodium quinoa HOM05D007018 ORTHO05D008887 3.0e-22 109.4 157 44.6
Potri.002G007601 Populus trichocarpa HOM05D007018 ORTHO05D008887 5.6e-21 105.1 74 68.9
AagrBONN_evm.TU.Sc2ySwM_228.4250 Anthoceros agrestis HOM05D007018 ORTHO05D008887 4.8e-20 102.1 78 60.3
PRCOL_00006317 Prasinoderma coloniale HOM05D007018 ORTHO05D008887 2.0e-18 96.7 137 40.9
SEGI_04341 Sequoiadendron giganteum HOM05D007018 ORTHO05D008887 7.9e-15 84.7 62 61.3
SHI07963 Sapria himalayana HOM05D007018 ORTHO05D008887 1.3e-09 67.4 40 77.5
HPP92_012557 Vanilla planifolia HOM05D007018 ORTHO05D008887 6.1e-07 58.5 66 45.5
SHI07962 Sapria himalayana HOM05D007018 ORTHO05D008887 1.0e-06 57.8 36 72.2


User provided reference genes

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