Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 6.0e-49 197.2 100 100.0
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 7.8e-33 143.7 100 79.0
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 2.4e-29 132.1 100 74.0
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.4e-29 132.1 100 73.0
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.0e-28 129.0 100 71.0
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 5.3e-21 104.4 81 64.2
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 6.9e-21 104.0 102 55.9
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 7.6e-20 100.5 95 58.9
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 2.9e-19 98.6 81 59.3
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 8.4e-19 97.1 71 70.4
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.1e-18 96.7 94 56.4
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.4e-18 96.3 96 56.2
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.4e-18 95.5 95 53.7
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 4.2e-18 94.7 68 66.2
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 5.4e-18 94.4 71 69.0
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 9.3e-18 93.6 80 60.0
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 2.1e-17 92.4 68 66.2
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.1e-17 92.4 80 61.2
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 2.7e-17 92.0 82 62.2
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 4.6e-17 91.3 70 67.1
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.3e-16 89.7 79 57.0
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 1.3e-16 89.7 80 55.0
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.3e-16 89.7 80 58.8
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.3e-16 89.0 81 58.0
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 3.0e-16 88.6 80 57.5
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 3.9e-16 88.2 77 58.4
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 3.9e-16 88.2 67 67.2
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.1e-16 87.8 84 59.5
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.7e-16 87.4 84 59.5
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.1e-15 86.7 79 57.0
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.1e-15 86.7 81 56.8
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.9e-15 85.9 80 57.5
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.3e-15 85.1 81 56.8
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.3e-15 85.1 84 58.3
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 4.3e-15 84.7 80 56.2
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 2.1e-14 82.4 82 53.7
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 2.8e-14 82.0 92 51.1
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 3.7e-14 81.6 99 51.5
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.7e-14 81.6 97 50.5
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 3.7e-14 81.6 83 57.8
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 4.8e-14 81.3 99 45.5
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 4.8e-14 81.3 93 50.5
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 6.2e-14 80.9 94 48.9
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 8.1e-14 80.5 94 48.9
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.8e-13 79.3 77 54.5
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 4.0e-13 78.2 91 49.5
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 5.3e-13 77.8 73 53.4
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 6.9e-13 77.4 76 57.9
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 3.4e-12 75.1 91 48.4
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 5.8e-12 74.3 92 47.8
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.7e-11 72.8 91 46.2
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 2.9e-11 72.0 84 52.4
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 3.8e-11 71.6 92 47.8
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 3.8e-11 71.6 70 57.1
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 4.9e-11 71.2 80 51.2
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 6.5e-11 70.9 81 50.6
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 8.4e-11 70.5 106 42.5
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 2.5e-10 68.9 102 41.2
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 3.2e-10 68.6 71 59.2
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 5.5e-10 67.8 78 48.7
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 9.3e-10 67.0 76 53.9
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 1.6e-09 66.2 96 44.8
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 2.7e-09 65.5 40 75.0
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 4.6e-09 64.7 76 47.4
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.6e-09 64.7 76 50.0
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 4.6e-09 64.7 104 41.3
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 4.6e-09 64.7 87 46.0
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 6.0e-09 64.3 80 41.2
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.9e-09 63.9 73 47.9
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.0e-08 63.5 73 47.9
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.0e-08 63.5 73 47.9
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.0e-08 63.5 73 47.9
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.0e-08 63.5 73 47.9
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 1.3e-08 63.2 97 37.1
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.3e-08 63.2 92 44.6
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.8e-08 62.8 70 45.7
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 1.8e-08 62.8 86 40.7
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 1.8e-08 62.8 67 49.3
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 3.0e-08 62.0 71 50.7
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 3.0e-08 62.0 63 52.4
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 3.9e-08 61.6 70 48.6
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 3.9e-08 61.6 71 50.7
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 5.1e-08 61.2 83 45.8
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 6.7e-08 60.8 75 49.3
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 8.7e-08 60.5 63 50.8
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.7e-08 60.5 77 46.8
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 8.7e-08 60.5 73 46.6
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 1.1e-07 60.1 62 53.2
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-07 60.1 68 48.5
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-07 60.1 68 48.5
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.1e-07 60.1 68 48.5
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 1.1e-07 60.1 62 53.2
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.1e-07 60.1 95 38.9
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-07 60.1 77 45.5
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.1e-07 60.1 91 42.9
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.5e-07 59.7 63 49.2
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.5e-07 59.7 63 49.2
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.9e-07 59.3 80 42.5
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.9e-07 59.3 73 45.2
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.9e-07 59.3 63 50.8
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.5e-07 58.9 86 40.7
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-07 58.9 63 49.2
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-07 58.9 63 49.2
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 2.5e-07 58.9 63 49.2
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 2.5e-07 58.9 79 43.0
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 3.3e-07 58.5 68 48.5
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 3.3e-07 58.5 91 41.8
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 3.3e-07 58.5 71 47.9
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 4.3e-07 58.2 78 44.9
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 5.7e-07 57.8 63 49.2
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 5.7e-07 57.8 63 49.2
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 5.7e-07 57.8 63 49.2
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 5.7e-07 57.8 77 42.9
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 5.7e-07 57.8 63 50.8
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.7e-07 57.8 96 38.5
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 5.7e-07 57.8 103 37.9
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 7.4e-07 57.4 63 52.4
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 7.4e-07 57.4 109 38.5
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 7.4e-07 57.4 75 44.0
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 9.6e-07 57.0 73 45.2
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 9.6e-07 57.0 61 52.5
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 9.6e-07 57.0 61 50.8
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 9.6e-07 57.0 46 56.5
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.3e-06 56.6 73 46.6
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 1.3e-06 56.6 99 38.4
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 1.6e-06 56.2 63 47.6
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.6e-06 56.2 63 47.6
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 1.6e-06 56.2 63 47.6
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 1.6e-06 56.2 63 47.6
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.6e-06 56.2 97 34.0
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 1.6e-06 56.2 107 35.5
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.6e-06 56.2 87 42.5
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 2.1e-06 55.8 61 50.8
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.1e-06 55.8 45 55.6
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.8e-06 55.5 45 55.6
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 2.8e-06 55.5 100 37.0
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 2.8e-06 55.5 48 54.2
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 4.8e-06 54.7 63 49.2
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 4.8e-06 54.7 68 48.5
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.8e-06 54.7 107 37.4
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 4.8e-06 54.7 82 41.5
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 6.2e-06 54.3 71 45.1
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 8.2e-06 53.9 67 47.8
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 8.2e-06 53.9 63 47.6
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 8.2e-06 53.9 80 43.8


User provided reference genes

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