Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005265 Sechium edule HOM05D004950 ORTHO05D004838 1.2e-146 524.2 567 100.0
ClCG07G017420 Citrullus lanatus HOM05D004950 ORTHO05D004838 5.0e-84 316.2 304 78.3
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 2.5e-83 313.9 307 78.8
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 6.8e-73 279.3 294 73.8
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 6.8e-73 279.3 294 73.8
Sed0023595 Sechium edule HOM05D004950 ORTHO05D004838 3.7e-63 246.9 300 69.0
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.2e-42 178.7 288 56.9
CsaV3_UNG223520 Cucumis sativus L. HOM05D004950 ORTHO05D004838 2.7e-37 161.0 283 49.5
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 5.6e-35 153.3 296 49.0
Eucgr.H04743 Eucalyptus grandis HOM05D004950 ORTHO05D004838 3.6e-34 150.6 301 43.2
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 5.2e-33 146.7 286 49.0
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 1.5e-32 145.2 313 36.7
CANSAT01G1426 Cannabis sativa HOM05D004950 ORTHO05D004838 2.6e-32 144.4 297 43.8
TAR376G0363 Trochodendron aralioides HOM05D004950 ORTHO05D004838 4.4e-32 143.7 295 38.0
Prupe.6G192500 Prunus persica HOM05D004950 ORTHO05D004838 3.2e-30 137.5 340 38.2
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 4.6e-29 133.7 301 36.5
CiPaw.03G145300 Carya illinoinensis HOM05D004950 ORTHO05D004838 3.0e-28 131.0 289 44.3
RcHm_v2.0_Chr2g0112431 Rosa chinensis HOM05D004950 ORTHO05D004838 2.5e-27 127.9 305 41.0
Thecc.01G096300 Theobroma cacao HOM05D004950 ORTHO05D004838 1.3e-26 125.6 310 45.8
Dinv08856 Davidia involucrata HOM05D004950 ORTHO05D004838 2.1e-26 124.8 301 44.5
Potri.005G072400 Populus trichocarpa HOM05D004950 ORTHO05D004838 2.1e-26 124.8 304 40.8
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 4.8e-26 123.6 309 36.2
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 8.1e-26 122.9 298 37.2
CiPaw.04G103200 Carya illinoinensis HOM05D004950 ORTHO05D004838 1.1e-25 122.5 288 40.3
Sabra05G0059200 Salix brachista HOM05D004950 ORTHO05D004838 1.4e-25 122.1 304 34.5
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 1.8e-25 121.7 291 35.1
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 4.0e-25 120.6 308 37.0
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 6.9e-25 119.8 293 33.8
Lalb_Chr11g0075431 Lupinus albus HOM05D004950 ORTHO05D004838 9.0e-25 119.4 293 38.6
Oeu033042.1 Olea europaea HOM05D004950 ORTHO05D004838 9.0e-25 119.4 303 39.9
MD11G1200900 Malus domestica HOM05D004950 ORTHO05D004838 2.6e-24 117.9 356 32.9
TWI53G1075 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 7.6e-24 116.3 312 30.4
FvH4_1g20290 Fragaria vesca HOM05D004950 ORTHO05D004838 2.2e-23 114.8 334 42.2
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 6.4e-23 113.2 334 42.2
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 6.4e-23 113.2 332 41.3
Cc07_g14660 Coffea canephora HOM05D004950 ORTHO05D004838 8.4e-23 112.8 297 40.4
FAN23G1536 Fragaria x ananassa HOM05D004950 ORTHO05D004838 8.4e-23 112.8 332 42.5
Lj2C540T9 Lonicera japonica HOM05D004950 ORTHO05D004838 8.4e-23 112.8 304 37.8
PSO675G9110 Papaver somniferum HOM05D004950 ORTHO05D004838 8.4e-23 112.8 307 32.9
PSO302G0004 Papaver somniferum HOM05D004950 ORTHO05D004838 1.9e-22 111.7 301 32.9
TWI74G0620 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 1.9e-22 111.7 310 35.2
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 2.4e-22 111.3 357 37.3
Sabra07G0079900 Salix brachista HOM05D004950 ORTHO05D004838 2.4e-22 111.3 291 41.2
PSO541G5545 Papaver somniferum HOM05D004950 ORTHO05D004838 7.1e-22 109.8 307 32.6
FAN26G1097 Fragaria x ananassa HOM05D000001 ORTHO05D004838 1.2e-21 109.0 334 38.0
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 1.6e-21 108.6 295 40.3
Potri.007G096600 Populus trichocarpa HOM05D004950 ORTHO05D004838 2.7e-21 107.8 291 41.2
GSVIVG01003422001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.7e-21 107.8 230 40.9
MSTRG.3758 Avicennia marina HOM05D004950 ORTHO05D004838 1.7e-20 105.1 300 30.3
CARHR246650 Cardamine hirsuta HOM05D004950 ORTHO05D004838 2.3e-20 104.8 330 30.0
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 2.3e-20 104.8 287 41.5
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 3.9e-20 104.0 298 42.6
Duzib147G1409 Durio zibethinus HOM05D004950 ORTHO05D004838 5.1e-20 103.6 304 40.5
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 6.6e-20 103.2 310 31.6
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 8.7e-20 102.8 290 40.3
EL10As13g24047 Beta vulgaris HOM05D004950 ORTHO05D004838 1.1e-19 102.4 292 31.2
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 2.5e-19 101.3 294 40.5
Aqoxy6G00721 Aquilegia oxysepala HOM05D004950 ORTHO05D004838 3.3e-19 100.9 295 38.6
Ca_16511_v3 Cicer arietinum L. HOM05D004950 ORTHO05D004838 3.3e-19 100.9 299 40.1
VMungo1383G3674 Vigna mungo HOM05D004950 ORTHO05D004838 4.3e-19 100.5 302 39.1
CSS0021212 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 5.6e-19 100.1 296 41.2
AL7G12330 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 1.6e-18 98.6 354 29.4
AT4G40020 Arabidopsis thaliana HOM05D004950 ORTHO05D004838 1.6e-18 98.6 348 29.0
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 8.1e-18 96.3 296 32.8
Glyma.11G241600 Glycine max HOM05D004950 ORTHO05D004838 1.1e-17 95.9 304 37.2
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 1.4e-17 95.5 296 31.1
THA.LOC104807862 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 1.4e-17 95.5 321 31.8
Phvul.001G253600 Phaseolus vulgaris HOM05D004950 ORTHO05D004838 6.9e-17 93.2 299 37.5
SalBow5G3597 Salvia bowleyana HOM05D004950 ORTHO05D004838 1.5e-16 92.0 294 35.7
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 2.0e-16 91.7 307 36.2
Migut.L00159 Erythranthe guttata HOM05D004950 ORTHO05D004838 3.4e-16 90.9 309 35.6
BcaNung00933 Brassica carinata HOM05D004950 ORTHO05D004838 5.8e-16 90.1 331 31.1
A01p00940 Brassica napus HOM05D004950 ORTHO05D004838 7.6e-16 89.7 332 31.0
BraA01t00092Z Brassica rapa HOM05D004950 ORTHO05D004838 7.6e-16 89.7 332 31.0
BolC1t00104H Brassica oleracea HOM05D004950 ORTHO05D004838 9.9e-16 89.4 334 34.7
unitig_32.g11809 Utricularia gibba HOM05D004950 ORTHO05D004838 9.9e-16 89.4 304 37.2
PGSC0003DMG400016153 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.7e-15 88.6 288 29.5
C01p01070 Brassica napus HOM05D004950 ORTHO05D004838 2.2e-15 88.2 331 30.8
unitig_748.g8651 Utricularia gibba HOM05D004950 ORTHO05D004838 2.9e-15 87.8 305 29.5
Sp7g35850 Schrenkiella parvula HOM05D004950 ORTHO05D004838 8.4e-15 86.3 357 27.2
Glyma.18G015400 Glycine max HOM05D004950 ORTHO05D004838 1.1e-14 85.9 295 38.3
ECA238G0370 Erigeron canadensis HOM05D004950 ORTHO05D004838 1.4e-14 85.5 323 28.5
Thhalv10027577m.g Eutrema salsugineum HOM05D004950 ORTHO05D004838 3.2e-14 84.3 354 28.8
Actinidia28833 Actinidia chinensis HOM05D000288 ORTHO05D004838 4.2e-14 84.0 125 45.6
Nn1g05445 Nelumbo nucifera HOM05D004950 ORTHO05D004838 5.5e-14 83.6 282 35.1
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 1.2e-13 82.4 318 27.0
HanXRQChr14g0445061 Helianthus annuus HOM05D004950 ORTHO05D004838 1.6e-13 82.0 130 38.5
CSS0046927 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 4.6e-13 80.5 299 40.5
Lsat_1_v5_gn_2_66121 Lactuca sativa HOM05D004950 ORTHO05D004838 4.6e-13 80.5 301 27.6
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 4.6e-13 80.5 288 38.2
Carub.0007s0199 Capsella rubella HOM05D004950 ORTHO05D004838 7.9e-13 79.7 351 29.6
CAN.G905.19 Capsicum annuum HOM05D004950 ORTHO05D004838 1.0e-12 79.3 293 28.3
MBI02_g33232_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004838 1.8e-12 78.6 302 27.5
Peaxi162Scf00383g01014 Petunia axillaris HOM05D004950 ORTHO05D004838 3.0e-12 77.8 286 34.3
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 2.5e-11 74.7 326 30.7
Nitab4.5_0006824g0010 Nicotiana tabacum HOM05D004950 ORTHO05D004838 5.6e-11 73.6 294 36.4
Ciclev10026989m.g Citrus clementina HOM05D004950 ORTHO05D000003 9.6e-11 72.8 128 55.5
Ah.03g142010 Amaranthus hybridus HOM05D004950 ORTHO05D004838 1.6e-10 72.0 298 36.6
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 2.1e-10 71.6 291 26.5
Duzib264G0159 Durio zibethinus HOM05D004950 ORTHO05D004838 2.1e-10 71.6 307 35.8
Gohir.D03G040150 Gossypium hirsutum HOM05D000001 ORTHO05D000003 2.8e-10 71.2 299 36.8
Gohir.A02G129300 Gossypium hirsutum HOM05D004950 ORTHO05D004838 6.2e-10 70.1 301 36.5
unitig_32.g10703 Utricularia gibba HOM05D004950 ORTHO05D004838 1.8e-09 68.6 122 37.7
SGA_v2.0_scaffold115G32166 Striga asiatica HOM05D004950 ORTHO05D004838 2.4e-09 68.2 126 52.4
Gorai.003G041200 Gossypium raimondii HOM05D000001 ORTHO05D000003 6.9e-09 66.6 301 37.2
Nitab4.5_0000241g0210 Nicotiana tabacum HOM05D000288 ORTHO05D004838 6.9e-09 66.6 298 34.9
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 2.6e-08 64.7 299 33.4
DCAR_016618 Daucus carota HOM05D004950 ORTHO05D004838 3.4e-08 64.3 353 29.5
COL.COLO4_27289 Corchorus olitorius HOM05D004950 ORTHO05D004838 4.5e-08 63.9 90 45.6
Gohir.A11G204800 Gossypium hirsutum HOM05D004950 ORTHO05D004838 4.5e-08 63.9 288 31.2
Sopen11g004990 Solanum pennellii HOM05D004950 ORTHO05D004838 7.6e-08 63.2 288 31.6
Gorai.007G059800 Gossypium raimondii HOM05D004950 ORTHO05D004838 1.0e-07 62.8 315 28.9
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.0e-07 62.8 119 35.3
THA.LOC104824888 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 1.3e-07 62.4 349 29.5
Nitab4.5_0000128g0260 Nicotiana tabacum HOM05D000288 ORTHO05D004838 1.7e-07 62.0 68 51.5
Sopen05g029920 Solanum pennellii HOM05D004950 ORTHO05D004838 2.9e-07 61.2 68 50.0
Nitab4.5_0010702g0020 Nicotiana tabacum HOM05D000288 ORTHO05D000173 1.4e-06 58.9 64 53.1
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 2.5e-06 58.2 114 44.7
HanXRQChr14g0445041 Helianthus annuus HOM05D004950 ORTHO05D004838 4.2e-06 57.4 116 34.5


User provided reference genes

Program Settings