Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 2.2e-22 108.2 59 100.0
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 2.6e-20 101.3 57 93.0
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 6.5e-19 96.7 57 89.5
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 1.5e-15 85.5 57 80.7
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 1.9e-15 85.1 57 78.9
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 4.3e-15 84.0 57 77.2
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 4.3e-15 84.0 57 77.2
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 9.7e-15 82.8 58 77.6
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 9.7e-15 82.8 57 75.4
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 1.3e-14 82.4 58 75.9
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 1.3e-14 82.4 57 75.4
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 1.7e-14 82.0 57 75.4
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 2.2e-14 81.6 57 71.9
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 2.8e-14 81.3 57 71.9
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.8e-14 81.3 57 71.9
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 2.8e-14 81.3 57 73.7
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 2.8e-14 81.3 57 70.2
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 2.8e-14 81.3 58 74.1
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 2.8e-14 81.3 57 75.4
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 3.7e-14 80.9 57 75.4
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 3.7e-14 80.9 57 71.9
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 4.8e-14 80.5 57 71.9
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 6.3e-14 80.1 57 70.2
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.1e-13 79.3 57 70.2
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.4e-13 79.0 57 70.2
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.8e-13 78.6 57 68.4
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 2.4e-13 78.2 58 74.1
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 3.1e-13 77.8 57 68.4
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 3.1e-13 77.8 58 69.0
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 4.1e-13 77.4 57 66.7
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 6.9e-13 76.6 57 70.2
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 9.1e-13 76.3 57 70.2
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 9.1e-13 76.3 57 66.7
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 1.2e-12 75.9 58 67.2
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 2.6e-12 74.7 57 71.9
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 3.4e-12 74.3 58 67.2
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 3.4e-12 74.3 58 67.2
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 4.5e-12 73.9 57 63.2
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 4.5e-12 73.9 56 67.9
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 4.5e-12 73.9 58 69.0
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 5.9e-12 73.6 57 64.9
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 5.9e-12 73.6 57 68.4
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 5.9e-12 73.6 57 68.4
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 7.7e-12 73.2 55 69.1
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 7.7e-12 73.2 57 63.2
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.0e-11 72.8 57 66.7
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 1.3e-11 72.4 57 66.7
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 2.2e-11 71.6 57 63.2
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 2.9e-11 71.2 57 66.7
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 3.8e-11 70.9 58 60.3
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 3.8e-11 70.9 57 61.4
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 6.5e-11 70.1 57 63.2
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 8.5e-11 69.7 57 61.4
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 1.9e-10 68.6 55 67.3
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 2.5e-10 68.2 63 61.9
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.5e-10 68.2 58 67.2
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.2e-10 67.8 57 61.4
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 4.2e-10 67.4 57 63.2
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 4.2e-10 67.4 58 65.5
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 4.2e-10 67.4 57 59.6
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 9.4e-10 66.2 56 66.1
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 9.4e-10 66.2 58 63.8
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.6e-09 65.5 58 62.1
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 2.1e-09 65.1 60 61.7
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.1e-09 65.1 57 57.9
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 2.7e-09 64.7 63 58.7
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 3.6e-09 64.3 57 57.9
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 3.6e-09 64.3 62 61.3
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 3.6e-09 64.3 62 61.3
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 4.7e-09 63.9 58 58.6
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 4.7e-09 63.9 62 59.7
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 4.7e-09 63.9 57 57.9
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 6.1e-09 63.5 56 64.3
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 7.9e-09 63.2 59 61.0
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.9e-09 63.2 61 57.4
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.0e-08 62.8 59 64.4
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.0e-08 62.8 61 57.4
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.4e-08 62.4 58 58.6
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 1.4e-08 62.4 59 59.3
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 1.8e-08 62.0 59 61.0
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 3.0e-08 61.2 56 62.5
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 3.0e-08 61.2 61 55.7
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 3.0e-08 61.2 61 54.1
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 3.0e-08 61.2 61 54.1
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 3.9e-08 60.8 62 58.1
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 3.9e-08 60.8 62 56.5
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.9e-08 60.8 61 54.1
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.9e-08 60.8 61 54.1
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 6.7e-08 60.1 55 61.8
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 6.7e-08 60.1 45 66.7
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 8.8e-08 59.7 52 59.6
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 8.8e-08 59.7 52 59.6
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 8.8e-08 59.7 61 54.1
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 1.1e-07 59.3 63 58.7
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.5e-07 58.9 62 56.5
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 2.0e-07 58.5 56 58.9
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 2.6e-07 58.2 52 59.6
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 3.3e-07 57.8 52 57.7
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 4.4e-07 57.4 52 59.6
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 4.4e-07 57.4 52 59.6
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 4.4e-07 57.4 52 59.6
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 4.4e-07 57.4 52 59.6
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 4.4e-07 57.4 52 59.6
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 4.4e-07 57.4 57 52.6
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 4.4e-07 57.4 61 59.0
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 7.4e-07 56.6 52 57.7
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 7.4e-07 56.6 59 55.9
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 7.4e-07 56.6 62 54.8
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 7.4e-07 56.6 55 56.4
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 9.7e-07 56.2 62 56.5
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.3e-06 55.8 64 53.1
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 1.7e-06 55.5 52 57.7
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.7e-06 55.5 49 53.1
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-06 55.1 57 52.6
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 2.2e-06 55.1 45 57.8
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 3.7e-06 54.3 57 50.9
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 3.7e-06 54.3 57 50.9
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 3.7e-06 54.3 57 50.9
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 3.7e-06 54.3 57 50.9
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 3.7e-06 54.3 57 50.9
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 3.7e-06 54.3 36 63.9
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 4.8e-06 53.9 57 49.1
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 6.3e-06 53.5 56 51.8
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 6.3e-06 53.5 63 49.2
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 8.2e-06 53.1 59 54.2


User provided reference genes

Program Settings