Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 1.2e-107 393.3 204 100.0
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 4.1e-97 358.2 206 91.3
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 7.0e-97 357.5 206 90.3
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 1.0e-95 353.6 206 89.3
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 1.1e-86 323.6 204 81.4
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 1.1e-86 323.6 204 81.4
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 2.5e-86 322.4 204 80.9
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 4.3e-86 321.6 204 81.9
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 7.3e-86 320.9 200 82.0
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 2.1e-85 319.3 205 82.0
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 3.6e-85 318.5 205 81.5
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 4.0e-84 315.1 205 80.5
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 6.8e-84 314.3 205 82.0
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 1.5e-83 313.2 190 83.2
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 2.0e-83 312.8 205 79.5
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 2.6e-83 312.4 205 79.5
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 3.4e-83 312.0 204 79.4
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 3.4e-83 312.0 204 79.9
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 4.4e-83 311.6 206 78.6
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 9.9e-83 310.5 204 80.4
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 2.9e-82 308.9 205 78.0
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 8.4e-82 307.4 205 78.0
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 1.4e-81 306.6 205 77.6
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 1.9e-81 306.2 203 79.8
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 4.1e-81 305.1 202 79.7
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 4.1e-81 305.1 204 78.9
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 9.2e-81 303.9 204 77.0
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 9.2e-81 303.9 200 79.5
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 1.6e-80 303.1 205 76.1
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 2.7e-80 302.4 204 78.4
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 3.5e-80 302.0 203 77.3
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 3.5e-80 302.0 204 77.0
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 4.6e-80 301.6 204 79.4
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 4.6e-80 301.6 205 77.6
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 1.0e-79 300.4 192 79.2
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 1.0e-79 300.4 203 78.3
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 1.3e-79 300.1 205 77.1
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 2.3e-79 299.3 186 81.7
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 3.0e-79 298.9 192 79.2
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.0e-79 298.9 204 77.5
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 3.0e-79 298.9 207 76.3
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 5.1e-79 298.1 205 77.1
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 5.1e-79 298.1 189 81.5
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.5e-78 296.6 204 77.0
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 1.5e-78 296.6 206 76.2
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 1.9e-78 296.2 205 77.1
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 3.3e-78 295.4 186 81.7
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 4.3e-78 295.0 222 73.4
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 4.3e-78 295.0 205 76.1
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 7.3e-78 294.3 206 77.7
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 1.6e-77 293.1 198 77.8
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.1e-77 292.7 204 76.5
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.1e-77 292.7 204 76.5
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 2.1e-77 292.7 204 76.5
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 4.7e-77 291.6 205 75.1
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 6.2e-77 291.2 229 69.4
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 6.2e-77 291.2 199 77.4
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 8.1e-77 290.8 206 75.7
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 1.1e-76 290.4 204 76.0
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 1.1e-76 290.4 204 75.5
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 1.4e-76 290.0 201 74.6
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 3.1e-76 288.9 204 74.5
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 5.2e-76 288.1 200 75.0
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 8.9e-76 287.3 197 75.1
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 2.0e-75 286.2 203 74.4
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 2.0e-75 286.2 203 74.4
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 2.0e-75 286.2 203 73.4
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 5.8e-75 284.6 191 78.0
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 2.9e-74 282.3 195 75.9
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 3.8e-74 282.0 190 76.8
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 4.9e-74 281.6 195 73.8
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 4.9e-74 281.6 225 69.8
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 1.1e-73 280.4 204 73.5
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 1.9e-73 279.6 204 72.1
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 2.4e-73 279.3 205 72.2
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 3.2e-73 278.9 204 71.6
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 5.4e-73 278.1 204 74.0
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 7.1e-73 277.7 222 70.7
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 7.1e-73 277.7 205 71.7
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 1.2e-72 276.9 204 71.1
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 1.2e-72 276.9 204 70.6
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 2.1e-72 276.2 204 70.1
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 3.5e-72 275.4 204 70.6
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 3.5e-72 275.4 204 70.6
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 3.5e-72 275.4 202 72.8
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 4.6e-72 275.0 204 70.6
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 4.6e-72 275.0 204 70.6
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 4.6e-72 275.0 204 70.6
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 4.6e-72 275.0 201 70.6
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 1.0e-71 273.9 204 70.1
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 1.7e-71 273.1 176 81.8
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 1.1e-70 270.4 199 70.9
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 3.3e-70 268.9 201 71.1
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 7.3e-70 267.7 190 73.2
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 2.1e-69 266.2 204 70.6
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 1.1e-68 263.8 315 51.1
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 6.4e-66 254.6 238 59.7
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 8.4e-66 254.2 161 81.4
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 7.9e-64 247.7 167 75.4
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 7.4e-62 241.1 206 64.1
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 6.2e-61 238.0 155 78.1
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 1.4e-52 210.3 132 81.1
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 1.0e-50 204.1 116 88.8
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 3.2e-49 199.1 134 75.4
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 3.2e-49 199.1 134 76.9
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 4.6e-48 195.3 122 80.3
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 3.0e-47 192.6 116 83.6
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 8.7e-47 191.0 105 87.6
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 1.3e-45 187.2 134 74.6
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 4.8e-45 185.3 151 62.9
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 1.1e-41 174.1 108 81.5
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.2e-35 154.1 147 59.2
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 2.0e-35 153.3 186 48.4
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 2.5e-33 146.4 191 47.6
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 4.2e-33 145.6 182 45.6
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 1.4e-28 130.6 138 49.3
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 2.4e-28 129.8 93 74.2
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 5.9e-27 125.2 184 42.4
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 1.1e-25 120.9 134 51.5
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 2.3e-23 113.2 248 33.5
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 1.7e-21 107.1 199 41.7
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 2.7e-11 73.2 172 31.4
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 3.8e-10 69.3 71 50.7
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.4e-07 60.8 48 62.5
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 6.8e-07 58.5 35 77.1
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 8.8e-07 58.2 55 58.2
TAR371G0726 Trochodendron aralioides HOM05D000922 ORTHO05D008200 5.7e-06 55.5 33 81.8


User provided reference genes

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