Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005171 Sechium edule HOM05D007422 ORTHO05D009333 1.2e-56 223.0 114 100.0
MD05G1015900 Malus domestica HOM05D007422 ORTHO05D009333 1.7e-20 102.8 112 53.6
MELO3C023262.2 Cucumis melo HOM05D007422 ORTHO05D009333 3.0e-20 102.1 112 55.4
TWI31G1366 Tripterygium wilfordii HOM05D007422 ORTHO05D009333 1.5e-19 99.8 109 50.5
Ah.02g122030 Amaranthus hybridus HOM05D007422 ORTHO05D009333 1.9e-19 99.4 107 52.3
RcHm_v2.0_Chr2g0118261 Rosa chinensis HOM05D007422 ORTHO05D009333 3.3e-19 98.6 113 54.0
CDE08G0547 Ceratophyllum demersum HOM05D007422 ORTHO05D009333 4.3e-19 98.2 98 54.1
TPR.G18719 Trifolium pratense HOM05D007422 ORTHO05D009333 4.3e-19 98.2 110 52.7
TWI75G1659 Tripterygium wilfordii HOM05D007422 ORTHO05D009333 5.6e-19 97.8 109 50.5
Potri.005G056500 Populus trichocarpa HOM05D007422 ORTHO05D009333 7.3e-19 97.4 115 53.0
AL1G56040 Arabidopsis lyrata HOM05D007422 ORTHO05D009333 1.3e-18 96.7 103 53.4
AT1G49170 Arabidopsis thaliana HOM05D007422 ORTHO05D009333 1.3e-18 96.7 103 52.4
CAN.G900.53 Capsicum annuum HOM05D007422 ORTHO05D009333 1.3e-18 96.7 110 53.6
Manes.12G151400 Manihot esculenta HOM05D007422 ORTHO05D009333 2.1e-18 95.9 115 53.0
Manes.12G151600 Manihot esculenta HOM05D007422 ORTHO05D009333 2.1e-18 95.9 115 53.0
PGR102G2924 Punica granatum HOM05D007422 ORTHO05D009333 2.8e-18 95.5 110 52.7
DCAR_031485 Daucus carota HOM05D007422 ORTHO05D009333 4.8e-18 94.7 108 55.6
Lalb_Chr08g0238531 Lupinus albus HOM05D007422 ORTHO05D009333 4.8e-18 94.7 110 52.7
Cpa.g.sc42.105 Carica papaya HOM05D007422 ORTHO05D009333 6.2e-18 94.4 115 52.2
Cfa002851 Carpinus fangiana HOM05D007422 ORTHO05D009333 6.2e-18 94.4 96 54.2
Carub.0001s3836 Capsella rubella HOM05D007422 ORTHO05D009333 8.1e-18 94.0 113 49.6
Ciclev10026766m.g Citrus clementina HOM05D007422 ORTHO05D009333 8.1e-18 94.0 113 47.8
arahy.Tifrunner.gnm1.ann1.DL1AJH Arachis hypogaea HOM05D007422 ORTHO05D009333 1.4e-17 93.2 110 53.6
CiPaw.04G085200 Carya illinoinensis HOM05D007422 ORTHO05D009333 1.4e-17 93.2 115 49.6
Duzib264G1170 Durio zibethinus HOM05D007422 ORTHO05D009333 1.4e-17 93.2 111 53.2
Prupe.6G165000 Prunus persica HOM05D007422 ORTHO05D009333 1.4e-17 93.2 113 52.2
Sp1g36060 Schrenkiella parvula HOM05D007422 ORTHO05D009333 1.8e-17 92.8 114 50.0
Migut.H01100 Erythranthe guttata HOM05D007422 ORTHO05D009333 2.4e-17 92.4 108 48.1
Lj1g0018544 Lotus japonicus HOM05D007422 ORTHO05D009333 2.4e-17 92.4 110 50.9
Medtr3g095670 Medicago truncatula HOM05D007422 ORTHO05D009333 2.4e-17 92.4 110 51.8
Psat5g063240 Pisum sativum HOM05D007422 ORTHO05D009333 2.4e-17 92.4 110 50.0
Hund04464 Selenicereus undatus HOM05D007422 ORTHO05D009333 2.4e-17 92.4 112 51.8
Solyc03g078350.3 Solanum lycopersicum HOM05D007422 ORTHO05D009333 2.4e-17 92.4 109 51.4
THA.LOC104821861 Tarenaya hassleriana HOM05D007422 ORTHO05D009333 2.4e-17 92.4 113 50.4
vmacro18659 Vaccinium macrocarpon HOM05D007422 ORTHO05D009333 2.4e-17 92.4 114 48.2
VMungo1309G2444 Vigna mungo HOM05D007422 ORTHO05D009333 2.4e-17 92.4 110 50.0
PGSC0003DMG400018421 Solanum tuberosum HOM05D007422 ORTHO05D009333 3.1e-17 92.0 106 51.9
CANSAT01G0526 Cannabis sativa HOM05D007422 ORTHO05D009333 4.0e-17 91.7 113 51.3
CARHR039170 Cardamine hirsuta HOM05D007422 ORTHO05D009333 4.0e-17 91.7 113 47.8
Cc07_g17580 Coffea canephora HOM05D007422 ORTHO05D009333 4.0e-17 91.7 112 48.2
Phvul.009G147900 Phaseolus vulgaris HOM05D007422 ORTHO05D009333 4.0e-17 91.7 110 49.1
Sopen03g021130 Solanum pennellii HOM05D007422 ORTHO05D009333 4.0e-17 91.7 109 51.4
A05p20740 Brassica napus HOM05D007422 ORTHO05D009333 5.3e-17 91.3 113 47.8
BraA05t20982Z Brassica rapa HOM05D007422 ORTHO05D009333 5.3e-17 91.3 113 47.8
Thhalv10011860m.g Eutrema salsugineum HOM05D007422 ORTHO05D009333 5.3e-17 91.3 113 52.2
FvH4_1g23360 Fragaria vesca HOM05D007422 ORTHO05D009333 5.3e-17 91.3 109 49.5
FAN19G2306 Fragaria x ananassa HOM05D007422 ORTHO05D009333 5.3e-17 91.3 109 49.5
Lsat_1_v5_gn_8_142161 Lactuca sativa HOM05D007422 ORTHO05D009333 5.3e-17 91.3 109 49.5
arahy.Tifrunner.gnm1.ann1.PIK6SY Arachis hypogaea HOM05D007422 ORTHO05D009333 6.9e-17 90.9 110 52.7
SGA_v2.0_scaffold137G35131 Striga asiatica HOM05D007422 ORTHO05D009333 6.9e-17 90.9 108 50.0
Thecc.01G123800 Theobroma cacao HOM05D007422 ORTHO05D009333 6.9e-17 90.9 111 53.2
COL.COLO4_21895 Corchorus olitorius HOM05D007422 ORTHO05D009333 9.0e-17 90.5 112 52.7
HanXRQChr17g0559811 Helianthus annuus HOM05D007422 ORTHO05D009333 9.0e-17 90.5 106 50.0
Dinv18494 Davidia involucrata HOM05D007422 ORTHO05D009333 1.2e-16 90.1 112 46.4
QL06p030244 Quercus lobata HOM05D007422 ORTHO05D009333 1.5e-16 89.7 97 52.6
Gohir.D04G029700 Gossypium hirsutum HOM05D007422 ORTHO05D009333 2.0e-16 89.4 111 53.2
Gorai.012G032800 Gossypium raimondii HOM05D007422 ORTHO05D009333 2.0e-16 89.4 111 53.2
Nitab4.5_0006443g0040 Nicotiana tabacum HOM05D007422 ORTHO05D009333 2.0e-16 89.4 111 48.6
PSO170G3514 Papaver somniferum HOM05D007422 ORTHO05D009333 2.0e-16 89.4 115 47.8
TAR628G0864 Trochodendron aralioides HOM05D007422 ORTHO05D009333 2.0e-16 89.4 111 48.6
Atru.chr4.503 Acer truncatum HOM05D007422 ORTHO05D009333 2.6e-16 89.0 116 43.1
MSTRG.2680 Avicennia marina HOM05D007422 ORTHO05D009333 2.6e-16 89.0 108 48.1
ECA233G2273 Erigeron canadensis HOM05D002719 ORTHO05D002938 2.6e-16 89.0 105 51.4
Nn1g06132 Nelumbo nucifera HOM05D007422 ORTHO05D009333 2.6e-16 89.0 111 51.4
Aqoxy5G02143 Aquilegia oxysepala HOM05D007422 ORTHO05D009333 3.4e-16 88.6 87 58.6
CDE06G1708 Ceratophyllum demersum HOM05D007422 ORTHO05D009333 4.5e-16 88.2 95 53.7
Glyma.04G215300 Glycine max HOM05D007422 ORTHO05D009333 4.5e-16 88.2 110 49.1
Glyma.06G150900 Glycine max HOM05D007422 ORTHO05D009333 5.8e-16 87.8 110 50.0
Oeu039761.1 Olea europaea HOM05D007422 ORTHO05D009333 5.8e-16 87.8 109 51.4
Aa31LG10G5060 Aethionema arabicum HOM05D007422 ORTHO05D009333 7.6e-16 87.4 116 45.7
BolC5t32228H Brassica oleracea HOM05D007422 ORTHO05D009333 7.6e-16 87.4 113 46.0
MBI17_g11164_MAGBIO Magnolia biondii HOM05D007422 ORTHO05D009333 9.9e-16 87.0 90 50.0
PSO017G6029 Papaver somniferum HOM05D007422 ORTHO05D009333 9.9e-16 87.0 115 47.0
SEGI_34968 Sequoiadendron giganteum HOM05D007422 ORTHO05D009333 2.2e-15 85.9 87 49.4
Zm00001eb076010 Zea mays HOM05D007422 ORTHO05D009333 2.2e-15 85.9 111 45.0
ATR0772G041 Amborella trichopoda HOM05D007422 ORTHO05D009333 2.9e-15 85.5 95 51.6
BcaC05g27531 Brassica carinata HOM05D007422 ORTHO05D009333 2.9e-15 85.5 113 45.1
C05p35090 Brassica napus HOM05D007422 ORTHO05D009333 2.9e-15 85.5 113 45.1
Prupe.6G164500 Prunus persica HOM05D007422 ORTHO05D009333 4.9e-15 84.7 113 46.9
unitig_60.g25621 Utricularia gibba HOM05D007422 ORTHO05D009333 4.9e-15 84.7 103 46.6
Os04g0686300 Oryza sativa ssp. japonica HOM05D007422 ORTHO05D009333 8.4e-15 84.0 84 53.6
ClCG02G000660 Citrullus lanatus HOM05D007422 ORTHO05D009333 1.1e-14 83.6 65 67.7
Gohir.A05G386900 Gossypium hirsutum HOM05D007422 ORTHO05D009333 1.1e-14 83.6 108 50.0
Sabra05G0048800 Salix brachista HOM05D007422 ORTHO05D009333 2.4e-14 82.4 124 46.0
Ca_16922_v3 Cicer arietinum L. HOM05D007422 ORTHO05D009333 7.9e-13 77.4 110 45.5
AUR62003614 Chenopodium quinoa HOM05D007422 ORTHO05D009333 1.0e-12 77.0 109 46.8
Sc03g0005110 Simmondsia chinensis HOM05D007422 ORTHO05D009333 1.0e-12 77.0 130 39.2
BcaB02g11281 Brassica carinata HOM05D007422 ORTHO05D009333 3.0e-12 75.5 110 45.5
Peaxi162Scf00583g00227 Petunia axillaris HOM05D007422 ORTHO05D009333 3.9e-12 75.1 111 45.0
CSS0008685 Camellia sinensis var. sinensis HOM05D007422 ORTHO05D009333 1.5e-11 73.2 74 52.7
HPP92_006817 Vanilla planifolia HOM05D007422 ORTHO05D009333 3.3e-11 72.0 109 39.4
Haze_25151 Corylus avellana HOM05D007422 ORTHO05D009333 4.3e-11 71.6 55 60.0
AUR62017925 Chenopodium quinoa HOM05D007422 ORTHO05D009333 1.3e-10 70.1 71 53.5
Mapoly0054s0054 Marchantia polymorpha HOM05D007422 ORTHO05D009333 1.2e-08 63.5 89 37.1
FAN23G3068 Fragaria x ananassa HOM05D007422 ORTHO05D009333 3.4e-08 62.0 79 48.1
Pp3c13_2330 Physcomitrium patens HOM05D007422 ORTHO05D009333 5.8e-08 61.2 64 46.9
BcaB02g11285 Brassica carinata HOM05D007422 ORTHO05D009333 9.3e-06 53.9 101 36.6


User provided reference genes

Program Settings