Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005131 Sechium edule HOM05D007586 ORTHO05D009554 5.6e-36 153.7 74 100.0
CsaV3_6G005530 Cucumis sativus L. HOM05D007586 ORTHO05D009554 4.0e-26 120.9 75 78.7
ClCG06G005620 Citrullus lanatus HOM05D007586 ORTHO05D009554 1.2e-25 119.4 75 78.7
CiPaw.02G089500 Carya illinoinensis HOM05D007586 ORTHO05D009554 1.7e-21 105.5 64 78.1
vmacro15289 Vaccinium macrocarpon HOM05D007586 ORTHO05D009554 4.3e-20 100.9 67 70.1
Haze_01009 Corylus avellana HOM05D007586 ORTHO05D009554 1.6e-19 99.0 60 76.7
Duzib151G0133 Durio zibethinus HOM05D007586 ORTHO05D009554 2.1e-19 98.6 71 63.4
Nn4g26123 Nelumbo nucifera HOM05D007586 ORTHO05D009554 2.1e-19 98.6 69 68.1
Cc03_g02750 Coffea canephora HOM05D007586 ORTHO05D009554 4.8e-19 97.4 61 77.0
Gohir.D10G162600 Gossypium hirsutum HOM05D007586 ORTHO05D009554 4.8e-19 97.4 65 69.2
Gorai.011G181700 Gossypium raimondii HOM05D007586 ORTHO05D009554 4.8e-19 97.4 65 69.2
Manes.03G188100 Manihot esculenta HOM05D007586 ORTHO05D009554 4.8e-19 97.4 68 70.6
Potri.008G198500 Populus trichocarpa HOM05D007586 ORTHO05D009554 4.8e-19 97.4 70 64.3
Sabra08G0162000 Salix brachista HOM05D007586 ORTHO05D009554 4.8e-19 97.4 70 65.7
Thecc.04G272400 Theobroma cacao HOM05D007586 ORTHO05D009554 4.8e-19 97.4 71 66.2
Actinidia00073 Actinidia chinensis HOM05D007586 ORTHO05D009554 6.2e-19 97.1 62 74.2
Gohir.A10G105800 Gossypium hirsutum HOM05D007586 ORTHO05D009554 1.4e-18 95.9 65 69.2
arahy.Tifrunner.gnm1.ann1.5VHG73 Arachis hypogaea HOM05D007586 ORTHO05D009554 1.8e-18 95.5 63 68.3
Cfa015540 Carpinus fangiana HOM05D007586 ORTHO05D009554 1.8e-18 95.5 60 71.7
arahy.Tifrunner.gnm1.ann1.SH255N Arachis hypogaea HOM05D007586 ORTHO05D009554 2.4e-18 95.1 63 66.7
Potri.010G028000 Populus trichocarpa HOM05D007586 ORTHO05D009554 2.4e-18 95.1 76 64.5
Atru.chr4.2702 Acer truncatum HOM05D007586 ORTHO05D009554 4.0e-18 94.4 87 55.2
Dinv38351 Davidia involucrata HOM05D007586 ORTHO05D009554 4.0e-18 94.4 58 74.1
MD13G1177700 Malus domestica HOM05D007586 ORTHO05D009554 5.3e-18 94.0 62 71.0
Medtr2g020920 Medicago truncatula HOM05D007586 ORTHO05D009554 5.3e-18 94.0 69 62.3
QL06p006198 Quercus lobata HOM05D007586 ORTHO05D009554 5.3e-18 94.0 66 69.7
Ah.04g150810 Amaranthus hybridus HOM05D007586 ORTHO05D009554 9.0e-18 93.2 70 65.7
PSO832G2949 Papaver somniferum HOM05D007586 ORTHO05D009554 9.0e-18 93.2 64 68.8
COL.COLO4_13963 Corchorus olitorius HOM05D007586 ORTHO05D009554 1.2e-17 92.8 71 59.2
Cpa.g.sc16.72 Carica papaya HOM05D007586 ORTHO05D009554 1.5e-17 92.4 61 67.2
MBI19_g21636_MAGBIO Magnolia biondii HOM05D007586 ORTHO05D009554 2.0e-17 92.0 60 68.3
PSO210G0926 Papaver somniferum HOM05D007586 ORTHO05D009554 2.0e-17 92.0 64 68.8
ATR0626G363 Amborella trichopoda HOM05D007586 ORTHO05D009554 2.6e-17 91.7 67 59.7
Hma1.2p1_2025F.1_g311520 Hydrangea macrophylla HOM05D007586 ORTHO05D009554 2.6e-17 91.7 64 68.8
unitig_749.g14058 Utricularia gibba HOM05D007586 ORTHO05D009554 4.5e-17 90.9 57 71.9
Sopen01g032230 Solanum pennellii HOM05D007586 ORTHO05D009554 1.3e-16 89.4 70 61.4
DCAR_027132 Daucus carota HOM05D007586 ORTHO05D009554 1.7e-16 89.0 72 58.3
CSS0032912 Camellia sinensis var. sinensis HOM05D007586 ORTHO05D009554 2.2e-16 88.6 61 70.5
Lj6g0006659 Lotus japonicus HOM05D007586 ORTHO05D009554 2.2e-16 88.6 67 65.7
Lalb_Chr18g0055891 Lupinus albus HOM05D007586 ORTHO05D009554 2.2e-16 88.6 70 57.1
Prupe.1G146700 Prunus persica HOM05D007586 ORTHO05D009554 2.2e-16 88.6 68 61.8
TPR.G18017 Trifolium pratense HOM05D007586 ORTHO05D009554 2.2e-16 88.6 59 66.1
THA.LOC104802735 Tarenaya hassleriana HOM05D007586 ORTHO05D009554 2.9e-16 88.2 56 71.4
EL10Ac3g07262 Beta vulgaris HOM05D007586 ORTHO05D009554 3.8e-16 87.8 62 62.9
Thhalv10015193m.g Eutrema salsugineum HOM05D007586 ORTHO05D009554 4.9e-16 87.4 67 59.7
GSVIVG01017851001 Vitis vinifera HOM05D007586 ORTHO05D009554 4.9e-16 87.4 58 67.2
Migut.G00284 Erythranthe guttata HOM05D007586 ORTHO05D009554 1.4e-15 85.9 78 59.0
Sp6g25470 Schrenkiella parvula HOM05D007586 ORTHO05D009554 1.9e-15 85.5 64 62.5
Zm00001eb349880 Zea mays HOM05D007586 ORTHO05D009554 2.4e-15 85.1 60 63.3
BraA10t44138Z Brassica rapa HOM05D007586 ORTHO05D009554 4.2e-15 84.3 56 66.1
BcaB01g04886 Brassica carinata HOM05D007586 ORTHO05D009554 7.1e-15 83.6 55 67.3
BcaB01g05279 Brassica carinata HOM05D007586 ORTHO05D009554 7.1e-15 83.6 62 64.5
A03p09170 Brassica napus HOM05D007586 ORTHO05D009554 7.1e-15 83.6 67 61.2
C03p10700 Brassica napus HOM05D007586 ORTHO05D009554 7.1e-15 83.6 62 64.5
BraA03t10240Z Brassica rapa HOM05D007586 ORTHO05D009554 7.1e-15 83.6 67 61.2
Phvul.006G158400 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 7.1e-15 83.6 65 60.0
Psat1g185520 Pisum sativum HOM05D007586 ORTHO05D009554 7.1e-15 83.6 67 58.2
SalBow2G2177 Salvia bowleyana HOM05D007586 ORTHO05D009554 7.1e-15 83.6 59 66.1
TAR636G1069 Trochodendron aralioides HOM05D007586 ORTHO05D009554 9.3e-15 83.2 52 75.0
arahy.Tifrunner.gnm1.ann1.70FWSL Arachis hypogaea HOM05D007586 ORTHO05D009554 2.7e-14 81.6 67 58.2
Phvul.006G158200 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 2.7e-14 81.6 73 54.8
TWI09G0380 Tripterygium wilfordii HOM05D007586 ORTHO05D009554 2.7e-14 81.6 84 53.6
Glyma.13G212100 Glycine max HOM05D007586 ORTHO05D009554 4.6e-14 80.9 69 59.4
FvH4_4g16650 Fragaria vesca HOM05D007586 ORTHO05D009554 6.0e-14 80.5 74 56.8
FAN12G0362 Fragaria x ananassa HOM05D007586 ORTHO05D009554 6.0e-14 80.5 74 56.8
AUR62018376 Chenopodium quinoa HOM05D000949 ORTHO05D001276 7.9e-14 80.1 60 61.7
RcHm_v2.0_Chr4g0420101 Rosa chinensis HOM05D007586 ORTHO05D009554 7.9e-14 80.1 57 63.2
Glyma.15G100600 Glycine max HOM05D007586 ORTHO05D009554 1.0e-13 79.7 71 57.7
CARHR194100 Cardamine hirsuta HOM05D007586 ORTHO05D009554 3.0e-13 78.2 65 56.9
COL.COLO4_25734 Corchorus olitorius HOM05D007586 ORTHO05D009554 3.0e-13 78.2 66 57.6
PGR031G0345 Punica granatum HOM05D007586 ORTHO05D009554 3.0e-13 78.2 47 74.5
CANSAT01G2672 Cannabis sativa HOM05D007586 ORTHO05D009554 5.1e-13 77.4 60 58.3
ECA246G1660 Erigeron canadensis HOM05D007586 ORTHO05D009554 5.1e-13 77.4 59 59.3
SEGI_37206 Sequoiadendron giganteum HOM05D007586 ORTHO05D009554 6.7e-13 77.0 56 57.1
MELO3C021384.2 Cucumis melo HOM05D007586 ORTHO05D009554 5.6e-12 73.9 40 85.0
Ciclev10006319m.g Citrus clementina HOM05D007586 ORTHO05D009554 1.6e-11 72.4 45 71.1
Os05g0404300 Oryza sativa ssp. japonica HOM05D007586 ORTHO05D009554 2.8e-11 71.6 52 61.5
Hma1.2p1_0511F.1_g169220 Hydrangea macrophylla HOM05D000488 ORTHO05D000347 3.7e-11 71.2 50 68.0
Aa31LG11G10810 Aethionema arabicum HOM05D007586 ORTHO05D009554 6.2e-11 70.5 47 66.0
AL6G30270 Arabidopsis lyrata HOM05D007586 ORTHO05D009554 6.2e-11 70.5 44 70.5
AT5G18920 Arabidopsis thaliana HOM05D007586 ORTHO05D009554 6.2e-11 70.5 44 70.5
Carub.0006s1722 Capsella rubella HOM05D007586 ORTHO05D009554 6.2e-11 70.5 44 70.5
Lj3g0017006 Lotus japonicus HOM05D007586 ORTHO05D009554 6.2e-11 70.5 53 64.2
FAN22G2185 Fragaria x ananassa HOM05D007586 ORTHO05D009554 8.1e-11 70.1 74 54.1
BcaB08g36636 Brassica carinata HOM05D007586 ORTHO05D009554 1.1e-10 69.7 61 55.7
Nitab4.5_0009518g0010 Nicotiana tabacum HOM05D007586 ORTHO05D009554 3.1e-10 68.2 51 62.7
Nitab4.5_0000201g0230 Nicotiana tabacum HOM05D007586 ORTHO05D009554 1.5e-09 65.9 51 58.8
BolC3t13546H Brassica oleracea HOM05D007586 ORTHO05D009554 2.6e-09 65.1 54 61.1
A10p20750 Brassica napus HOM05D007586 ORTHO05D009554 1.0e-08 63.2 42 66.7
Pp3c2_37920 Physcomitrium patens HOM05D007586 ORTHO05D009554 1.0e-08 63.2 48 54.2
Nitab4.5_0000059g0210 Nicotiana tabacum HOM05D007586 ORTHO05D009554 4.9e-08 60.8 56 55.4
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 1.9e-07 58.9 77 41.6
Medtr2g020940 Medicago truncatula HOM05D007586 ORTHO05D009554 2.5e-07 58.5 44 59.1
Eucgr.B01188 Eucalyptus grandis HOM05D007586 ORTHO05D009554 9.3e-07 56.6 50 62.0
Peaxi162Scf00095g00411 Petunia axillaris HOM05D007586 ORTHO05D009554 9.3e-07 56.6 41 63.4
Medtr2g020890 Medicago truncatula HOM05D007586 ORTHO05D009554 4.6e-06 54.3 63 47.6
Rhsim02G0016900 Rhododendron simsii HOM05D007586 ORTHO05D009554 7.9e-06 53.5 36 69.4


User provided reference genes

Program Settings