Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 2.3e-43 178.3 80 100.0
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 2.4e-40 168.3 84 90.5
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 4.1e-40 167.5 84 91.7
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 4.1e-40 167.5 84 90.5
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 5.3e-40 167.2 86 89.5
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 4.5e-39 164.1 85 88.2
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 7.6e-39 163.3 82 89.0
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 1.3e-38 162.5 83 86.7
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 2.9e-38 161.4 86 86.0
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 5.0e-38 160.6 84 85.7
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 8.4e-38 159.8 83 86.7
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.1e-37 159.5 84 83.3
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 1.4e-37 159.1 84 84.5
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 1.4e-37 159.1 81 87.7
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 2.5e-37 158.3 84 84.5
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 4.2e-37 157.5 83 84.3
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 4.2e-37 157.5 84 83.3
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 5.5e-37 157.1 83 86.7
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 5.5e-37 157.1 83 86.7
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 5.5e-37 157.1 84 83.3
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 7.2e-37 156.8 84 83.3
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 7.2e-37 156.8 87 81.6
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 1.2e-36 156.0 82 85.4
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.2e-36 156.0 82 85.4
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 1.2e-36 156.0 79 84.8
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 1.6e-36 155.6 80 86.2
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.6e-36 155.6 83 83.1
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.6e-36 155.6 83 81.9
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.7e-36 154.8 80 85.0
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.7e-36 154.8 80 85.0
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 2.7e-36 154.8 87 81.6
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 3.5e-36 154.5 86 79.1
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 3.5e-36 154.5 86 79.1
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 3.5e-36 154.5 81 85.2
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 3.5e-36 154.5 82 84.1
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.5e-36 154.5 82 85.4
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 3.5e-36 154.5 80 83.8
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 4.6e-36 154.1 86 81.4
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.6e-36 154.1 82 81.7
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 6.1e-36 153.7 82 84.1
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 6.1e-36 153.7 84 81.0
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 6.1e-36 153.7 86 79.1
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.0e-35 152.9 84 81.0
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.0e-35 152.9 84 81.0
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.0e-35 152.9 84 81.0
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.0e-35 152.9 84 81.0
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 1.0e-35 152.9 82 84.1
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 1.3e-35 152.5 81 84.0
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 1.3e-35 152.5 81 84.0
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.3e-35 152.5 85 80.0
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 1.8e-35 152.1 85 80.0
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.8e-35 152.1 79 84.8
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.8e-35 152.1 86 80.2
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 2.3e-35 151.8 86 79.1
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 3.0e-35 151.4 87 79.3
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 3.0e-35 151.4 80 83.8
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 3.0e-35 151.4 80 83.8
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 3.0e-35 151.4 80 83.8
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 3.9e-35 151.0 79 83.5
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 3.9e-35 151.0 87 80.5
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 5.1e-35 150.6 78 84.6
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 5.1e-35 150.6 78 84.6
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 6.7e-35 150.2 82 81.7
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 6.7e-35 150.2 86 79.1
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 6.7e-35 150.2 79 84.8
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 1.1e-34 149.4 82 81.7
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 1.1e-34 149.4 86 75.6
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 1.1e-34 149.4 86 75.6
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 1.1e-34 149.4 81 82.7
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 1.5e-34 149.1 83 78.3
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 1.9e-34 148.7 87 79.3
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 2.5e-34 148.3 78 84.6
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 2.5e-34 148.3 78 84.6
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 2.5e-34 148.3 82 80.5
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 3.3e-34 147.9 81 79.0
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 4.3e-34 147.5 82 80.5
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 4.3e-34 147.5 79 79.7
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 4.3e-34 147.5 89 77.5
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 5.7e-34 147.1 78 84.6
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 7.4e-34 146.7 79 83.5
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 9.7e-34 146.4 79 83.5
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 9.7e-34 146.4 77 83.1
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 9.7e-34 146.4 76 84.2
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.3e-33 146.0 87 77.0
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 2.2e-33 145.2 78 80.8
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 2.2e-33 145.2 76 82.9
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 3.7e-33 144.4 78 83.3
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 4.8e-33 144.1 78 83.3
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 4.8e-33 144.1 81 79.0
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 4.8e-33 144.1 85 76.5
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 6.3e-33 143.7 82 78.0
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 8.2e-33 143.3 70 87.1
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 8.2e-33 143.3 85 76.5
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 1.1e-32 142.9 84 77.4
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 1.8e-32 142.1 78 82.1
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 1.8e-32 142.1 77 83.1
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 1.8e-32 142.1 81 76.5
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 2.4e-32 141.7 84 77.4
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 4.1e-32 141.0 79 78.5
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 3.4e-31 137.9 80 78.8
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 3.4e-31 137.9 83 73.5
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 4.5e-31 137.5 81 74.1
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 5.9e-31 137.1 86 75.6
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 7.7e-31 136.7 83 74.7
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 2.2e-30 135.2 78 78.2
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 3.8e-30 134.4 84 72.6
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 2.5e-29 131.7 97 64.9
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 4.2e-29 131.0 77 74.0
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 6.1e-28 127.1 63 85.7
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 4.3e-26 120.9 63 81.0
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 7.4e-26 120.2 153 43.1
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 4.1e-24 114.4 80 66.2
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 6.5e-22 107.1 61 78.7
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 1.9e-21 105.5 80 63.8
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 2.5e-21 105.1 59 83.1
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 3.2e-21 104.8 56 83.9
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 3.2e-21 104.8 56 83.9
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 4.2e-21 104.4 59 79.7
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 7.2e-21 103.6 63 74.6
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.2e-20 102.8 58 77.6
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 1.2e-20 102.8 60 78.3
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 2.1e-20 102.1 54 79.6
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 2.1e-20 102.1 53 86.8
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 2.1e-20 102.1 62 74.2
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 2.7e-20 101.7 58 75.9
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 6.1e-20 100.5 56 80.4
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 7.9e-20 100.1 53 83.0
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 7.9e-20 100.1 55 85.5
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 1.0e-19 99.8 56 83.9
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 1.0e-19 99.8 60 78.3
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 1.4e-19 99.4 54 83.3
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 2.3e-19 98.6 60 76.7
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 3.9e-19 97.8 61 65.6
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 6.7e-19 97.1 59 72.9
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 6.7e-19 97.1 58 74.1
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 6.7e-19 97.1 63 73.0
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 6.7e-19 97.1 66 72.7
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 1.5e-18 95.9 53 79.2
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.3e-17 92.8 58 72.4
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 6.3e-17 90.5 61 68.9
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 1.7e-14 82.4 76 55.3
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.7e-14 82.4 61 63.9
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 3.8e-14 81.3 65 53.8
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 7.2e-13 77.0 39 84.6
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 3.0e-11 71.6 62 50.0


User provided reference genes

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