Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 2.3e-219 765.8 539 100.0
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 7.9e-180 634.4 540 76.1
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 5.6e-178 628.2 540 82.8
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 1.8e-176 623.2 539 76.3
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 5.3e-168 595.1 553 75.9
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 6.3e-137 491.9 548 64.8
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.7e-134 483.8 546 63.4
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 4.2e-133 479.2 547 65.6
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.0e-131 473.0 547 66.4
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 5.2e-131 472.2 558 65.1
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 2.0e-130 470.3 547 62.7
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.6e-130 469.9 558 64.9
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 3.4e-130 469.5 545 68.4
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 4.4e-130 469.2 545 68.3
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 7.0e-128 461.8 544 62.1
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 9.1e-128 461.5 546 60.8
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 1.1e-125 454.5 548 62.2
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 3.3e-125 453.0 544 60.3
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 5.5e-125 452.2 594 59.1
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 9.5e-125 451.4 541 63.8
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 1.6e-124 450.7 550 61.8
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 2.1e-124 450.3 549 65.0
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 3.6e-124 449.5 546 61.2
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.0e-123 448.0 555 64.9
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 1.8e-123 447.2 546 62.5
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 3.0e-123 446.4 551 60.1
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 5.2e-123 445.7 547 62.3
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.5e-122 444.1 539 60.3
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.6e-122 443.4 542 64.8
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 4.4e-122 442.6 545 60.4
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 7.5e-122 441.8 542 61.1
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 2.2e-121 440.3 542 60.5
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 2.8e-121 439.9 568 57.7
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 6.3e-121 438.7 563 61.8
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 8.3e-121 438.3 532 59.6
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 2.0e-119 433.7 548 58.0
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 3.5e-119 433.0 549 59.7
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 2.3e-118 430.3 545 60.4
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 2.9e-118 429.9 544 62.9
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 6.6e-118 428.7 547 60.3
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 8.6e-118 428.3 553 62.7
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.5e-117 427.6 542 60.9
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 4.3e-117 426.0 544 59.4
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 7.3e-117 425.2 547 60.0
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.2e-116 424.5 542 62.9
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 1.2e-114 417.9 542 61.6
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 1.5e-114 417.5 542 62.0
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 3.4e-114 416.4 570 60.9
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 4.4e-114 416.0 559 58.9
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 9.8e-114 414.8 546 67.0
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 9.8e-114 414.8 541 61.6
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 9.8e-114 414.8 542 60.1
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 1.7e-113 414.1 548 59.9
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 8.3e-113 411.8 542 57.4
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 2.4e-112 410.2 550 65.3
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 9.2e-112 408.3 546 61.7
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 3.5e-111 406.4 545 59.1
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 4.6e-111 406.0 545 58.5
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.0e-110 404.8 589 53.3
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.0e-110 404.8 543 60.6
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 1.7e-110 404.1 550 59.3
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 1.7e-110 404.1 542 60.0
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 3.9e-110 402.9 542 59.8
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 3.9e-110 402.9 548 61.5
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 6.6e-110 402.1 547 61.8
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 2.5e-109 400.2 560 55.5
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 4.3e-109 399.4 541 63.6
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 1.2e-108 397.9 553 61.1
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 4.7e-108 396.0 541 60.3
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 1.1e-107 394.8 553 59.9
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 1.1e-107 394.8 541 64.0
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 5.2e-107 392.5 558 60.9
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 1.5e-106 391.0 547 64.0
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 5.8e-106 389.0 548 62.0
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 1.7e-105 387.5 548 62.2
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 3.7e-105 386.3 549 58.3
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 4.9e-105 386.0 522 59.4
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 3.2e-104 383.3 547 58.0
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 5.6e-101 372.5 544 57.5
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 3.6e-100 369.8 569 54.5
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.0e-98 364.0 546 59.0
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.3e-97 361.3 551 55.9
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.1e-96 358.2 556 52.5
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.4e-96 357.8 542 58.7
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.1e-93 348.2 546 57.9
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 2.5e-93 347.1 550 56.7
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 9.6e-93 345.1 556 58.3
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 4.7e-92 342.8 558 55.6
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 6.8e-91 339.0 551 55.2
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 1.9e-88 330.9 552 56.9
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 3.5e-87 326.6 543 63.2
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.7e-86 324.3 559 53.7
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 1.1e-85 321.6 558 53.8
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 1.9e-85 320.9 547 52.3
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 4.3e-85 319.7 603 48.6
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 1.6e-84 317.8 550 52.5
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 5.3e-83 312.8 466 57.5
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 2.2e-81 307.4 548 49.1
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 2.1e-79 300.8 550 50.5
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 2.3e-78 297.4 486 53.7
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 2.5e-77 293.9 579 48.0
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 2.5e-77 293.9 554 46.9
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 5.6e-77 292.7 553 51.9
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 1.3e-76 291.6 556 49.6
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 2.4e-75 287.3 546 54.4
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 9.0e-75 285.4 285 68.8
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.0e-74 284.3 547 48.6
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 7.6e-74 282.3 570 49.5
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 9.9e-74 282.0 571 48.3
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 9.9e-74 282.0 209 75.1
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 2.2e-73 280.8 461 56.2
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 6.4e-73 279.3 197 78.7
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 8.4e-73 278.9 217 70.0
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 2.4e-72 277.3 548 49.6
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 6.0e-71 272.7 590 47.5
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 7.9e-71 272.3 204 73.5
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 6.2e-68 262.7 586 51.7
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 9.0e-67 258.8 489 51.7
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 1.1e-64 251.9 154 85.1
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 4.3e-61 240.0 175 74.9
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.1e-59 235.3 486 53.5
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 5.7e-53 213.0 160 73.8
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 2.1e-47 194.5 537 39.1
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.5e-45 187.6 125 79.2
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 1.8e-43 181.4 431 46.4
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 5.5e-40 169.9 201 64.2
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 1.4e-38 165.2 123 74.0
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 3.0e-30 137.5 520 46.7
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 4.4e-29 133.7 194 56.7
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 8.2e-28 129.4 119 68.9
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 9.1e-27 125.9 106 72.6
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 3.5e-26 124.0 116 65.5
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.9e-25 120.9 114 67.5
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.5e-24 118.6 146 54.1
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.9e-24 118.2 74 75.7
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 1.9e-24 118.2 108 67.6
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 7.2e-24 116.3 81 66.7
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 5.4e-19 100.1 64 81.2
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 7.0e-19 99.8 102 60.8
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 7.0e-19 99.8 168 39.9
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 5.0e-17 93.6 103 57.3
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 5.0e-17 93.6 99 63.6
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 8.8e-14 82.8 114 64.9
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.5e-13 82.0 71 67.6
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.5e-13 82.0 71 67.6
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 2.0e-13 81.6 58 79.3
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 2.2e-12 78.2 86 54.7
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 4.9e-12 77.0 46 84.8
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 4.7e-07 60.5 156 30.1
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 3.0e-06 57.8 78 52.6


User provided reference genes

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