Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 4.1e-46 188.7 192 100.0
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 3.3e-32 142.5 191 81.2
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 2.2e-31 139.8 93 88.2
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 1.2e-29 134.0 76 88.2
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 5.5e-19 98.6 60 80.0
Prupe.3G221700 Prunus persica HOM05D007783 ORTHO05D009740 2.8e-18 96.3 81 69.1
CANSAT64G1524 Cannabis sativa HOM05D007783 ORTHO05D009740 6.1e-18 95.1 72 69.4
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.8e-17 93.6 76 65.8
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 2.3e-17 93.2 55 78.2
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 5.2e-17 92.0 63 74.6
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 6.8e-17 91.7 77 67.5
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 1.2e-16 90.9 76 65.8
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 1.5e-16 90.5 76 64.5
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 2.6e-16 89.7 62 74.2
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 2.6e-16 89.7 89 61.8
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 3.4e-16 89.4 60 76.7
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 5.7e-16 88.6 75 64.0
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 7.5e-16 88.2 67 70.1
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 9.8e-16 87.8 55 74.5
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 2.8e-15 86.3 59 78.0
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 3.7e-15 85.9 76 63.2
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 6.3e-15 85.1 73 64.4
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 6.3e-15 85.1 58 77.6
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 6.3e-15 85.1 58 77.6
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 8.3e-15 84.7 57 73.7
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 8.3e-15 84.7 70 68.6
Nn1g06962 Nelumbo nucifera HOM05D007783 ORTHO05D009740 8.3e-15 84.7 57 73.7
Sabra17G0027500 Salix brachista HOM05D007783 ORTHO05D009740 8.3e-15 84.7 75 61.3
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 1.4e-14 84.0 47 85.1
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 1.4e-14 84.0 77 63.6
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.8e-14 83.6 76 63.2
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.8e-14 83.6 57 75.4
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 1.8e-14 83.6 59 71.2
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 2.4e-14 83.2 47 83.0
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 2.4e-14 83.2 76 63.2
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 4.1e-14 82.4 82 62.2
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 9.2e-14 81.3 77 59.7
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.2e-13 80.9 76 61.8
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 3.5e-13 79.3 67 62.7
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 5.9e-13 78.6 80 57.5
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 1.3e-12 77.4 78 62.8
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 1.7e-12 77.0 79 60.8
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 2.3e-12 76.6 78 59.0
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 2.3e-12 76.6 62 71.0
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 2.9e-12 76.3 76 56.6
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 3.8e-12 75.9 78 59.0
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 5.0e-12 75.5 57 68.4
Aqoxy4G02125 Aquilegia oxysepala HOM05D007783 ORTHO05D009740 6.6e-12 75.1 67 56.7
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 6.6e-12 75.1 71 56.3
Solyc07g052680.1 Solanum lycopersicum HOM05D007783 ORTHO05D009740 8.6e-12 74.7 62 64.5
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 8.6e-12 74.7 62 64.5
Nitab4.5_0017430g0010 Nicotiana tabacum HOM05D007783 ORTHO05D009740 1.5e-11 73.9 76 55.3
Sabra07G0097600 Salix brachista HOM05D007783 ORTHO05D009740 1.5e-11 73.9 76 55.3
CDE05G0218 Ceratophyllum demersum HOM05D007783 ORTHO05D009740 1.9e-11 73.6 77 53.2
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 3.3e-11 72.8 73 57.5
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 9.5e-11 71.2 82 54.9
Phvul.005G112200 Phaseolus vulgaris HOM05D007783 ORTHO05D009740 9.5e-11 71.2 58 65.5
EL10Ac3g05472 Beta vulgaris HOM05D007783 ORTHO05D009740 1.6e-10 70.5 63 60.3
Sc21g0001790 Simmondsia chinensis HOM05D007783 ORTHO05D009740 1.6e-10 70.5 58 65.5
Oeu011075.1 Olea europaea HOM05D007783 ORTHO05D009740 6.1e-10 68.6 79 53.2
Lsat_1_v5_gn_3_43341 Lactuca sativa HOM05D007783 ORTHO05D009740 1.4e-09 67.4 54 64.8
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 1.4e-09 67.4 79 55.7
Psat5g265520 Pisum sativum HOM05D007783 ORTHO05D009740 1.2e-08 64.3 57 59.6
Medtr2g089010 Medicago truncatula HOM05D007783 ORTHO05D009740 1.5e-08 63.9 56 64.3
SHI10279 Sapria himalayana HOM05D007783 ORTHO05D009740 1.5e-08 63.9 60 56.7
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 1.5e-08 63.9 47 70.2
VMungo1080G1091 Vigna mungo HOM05D007783 ORTHO05D009740 2.6e-08 63.2 61 63.9
THA.LOC104802538 Tarenaya hassleriana HOM05D007783 ORTHO05D009740 3.4e-08 62.8 45 71.1
unitig_749.g13945 Utricularia gibba HOM05D006348 ORTHO05D009740 3.4e-08 62.8 77 44.2
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 5.8e-08 62.0 48 66.7
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 5.8e-08 62.0 48 66.7
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 5.8e-08 62.0 67 53.7
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 5.8e-08 62.0 48 66.7
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 5.8e-08 62.0 48 66.7
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 5.8e-08 62.0 71 49.3
Ca_01568_v3 Cicer arietinum L. HOM05D007783 ORTHO05D009740 7.5e-08 61.6 68 57.4
Carub.0003s2223 Capsella rubella HOM05D007783 ORTHO05D009740 9.8e-08 61.2 59 61.0
DCAR_012961 Daucus carota HOM05D007783 ORTHO05D009740 1.3e-07 60.8 80 47.5
VMungo0331G0946 Vigna mungo HOM05D007783 ORTHO05D009740 2.9e-07 59.7 82 52.4
AL3G36260 Arabidopsis lyrata HOM05D007783 ORTHO05D009740 3.7e-07 59.3 47 66.0
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 3.7e-07 59.3 47 66.0
CARHR097930 Cardamine hirsuta HOM05D007783 ORTHO05D009740 6.4e-07 58.5 64 56.2
unitig_26.g9928 Utricularia gibba HOM05D006348 ORTHO05D008261 8.3e-07 58.2 80 41.2
Glyma.12G197200 Glycine max HOM05D007783 ORTHO05D009740 1.4e-06 57.4 58 55.2
SGA_v2.0_scaffold49G18329 Striga asiatica HOM05D007783 ORTHO05D009740 4.1e-06 55.8 55 58.2
Glyma.12G103000 Glycine max HOM05D007783 ORTHO05D009740 5.4e-06 55.5 53 60.4


User provided reference genes

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