Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005007 Sechium edule HOM05D007057 ORTHO05D008878 1.5e-213 746.9 755 100.0
MELO3C010073.2 Cucumis melo HOM05D007057 ORTHO05D008878 2.2e-167 593.6 755 83.6
ClCG03G010890 Citrullus lanatus HOM05D007057 ORTHO05D008878 2.6e-165 586.6 740 83.1
CsaV3_1G044640 Cucumis sativus L. HOM05D007057 ORTHO05D008878 1.0e-161 574.7 755 82.3
FAN02G0321 Fragaria x ananassa HOM05D007057 ORTHO05D008878 2.0e-88 331.3 732 64.3
FvH4_6g00680 Fragaria vesca HOM05D007057 ORTHO05D008878 3.4e-88 330.5 732 65.8
Cfa006273 Carpinus fangiana HOM05D007057 ORTHO05D008878 1.1e-86 325.5 731 62.4
Thecc.05G201600 Theobroma cacao HOM05D007057 ORTHO05D008878 3.2e-86 323.9 732 71.7
FAN05G1805 Fragaria x ananassa HOM05D007057 ORTHO05D008878 2.7e-85 320.9 732 63.7
FAN14G3263 Fragaria x ananassa HOM05D007057 ORTHO05D008878 3.7e-82 310.5 732 63.1
FAN09G2991 Fragaria x ananassa HOM05D007057 ORTHO05D008878 1.1e-81 308.9 732 62.7
RcHm_v2.0_Chr3g0448121 Rosa chinensis HOM05D007057 ORTHO05D008878 3.4e-80 303.9 732 69.8
Haze_04538 Corylus avellana HOM05D007057 ORTHO05D008878 7.6e-80 302.8 731 61.1
CANSAT54G2802 Cannabis sativa HOM05D007057 ORTHO05D008878 1.7e-79 301.6 734 67.2
Manes.08G104600 Manihot esculenta HOM05D007057 ORTHO05D008878 3.8e-79 300.4 729 67.4
TWI18G1405 Tripterygium wilfordii HOM05D007057 ORTHO05D008878 3.8e-79 300.4 727 64.1
QL01p045590 Quercus lobata HOM05D007057 ORTHO05D008878 3.2e-78 297.4 732 61.5
Duzib128G1528 Durio zibethinus HOM05D007057 ORTHO05D008878 7.1e-78 296.2 712 68.7
Lj1g0009704 Lotus japonicus HOM05D007057 ORTHO05D008878 2.3e-76 291.2 715 59.2
Duzib177G0705 Durio zibethinus HOM05D007057 ORTHO05D008878 7.4e-75 286.2 712 66.7
Potri.013G087200 Populus trichocarpa HOM05D007057 ORTHO05D008878 4.8e-74 283.5 712 66.3
GSVIVG01019130001 Vitis vinifera HOM05D007057 ORTHO05D008878 5.8e-72 276.6 700 67.7
Cpa.g.sc123.6 Carica papaya HOM05D007057 ORTHO05D008878 7.6e-72 276.2 713 69.7
Gohir.D04G026500 Gossypium hirsutum HOM05D007057 ORTHO05D008878 6.5e-71 273.1 712 69.2
PGR031G0541 Punica granatum HOM05D007057 ORTHO05D008878 7.1e-70 269.6 730 67.3
Gohir.A05G390700 Gossypium hirsutum HOM05D007057 ORTHO05D008878 9.3e-70 269.2 712 69.0
Glyma.18G240800 Glycine max HOM05D007057 ORTHO05D008878 6.0e-69 266.5 712 62.1
Glyma.09G251800 Glycine max HOM05D007057 ORTHO05D008878 1.8e-68 265.0 712 63.6
Atru.chr10.1100 Acer truncatum HOM05D007057 ORTHO05D008878 1.1e-67 262.3 734 68.8
Eucgr.H01380 Eucalyptus grandis HOM05D007057 ORTHO05D008878 3.1e-65 254.2 714 65.4
Lalb_Chr19g0126731 Lupinus albus HOM05D007057 ORTHO05D008878 6.5e-63 246.5 714 64.0
TPR.G28458 Trifolium pratense HOM05D007057 ORTHO05D008878 1.4e-62 245.4 714 64.4
Medtr7g079550 Medicago truncatula HOM05D007057 ORTHO05D008878 5.5e-62 243.4 713 65.2
Lalb_Chr03g0038391 Lupinus albus HOM05D007057 ORTHO05D008878 1.2e-61 242.3 714 63.4
VMungo1383G0494 Vigna mungo HOM05D007057 ORTHO05D008878 1.6e-61 241.9 715 60.3
Gorai.012G029100 Gossypium raimondii HOM05D007057 ORTHO05D008878 3.3e-59 234.2 712 67.1
Dinv04346 Davidia involucrata HOM05D007057 ORTHO05D008878 7.4e-59 233.0 747 60.2
Prupe.6G359800 Prunus persica HOM05D007057 ORTHO05D008878 9.7e-59 232.6 641 66.8
TWI75G1373 Tripterygium wilfordii HOM05D007057 ORTHO05D008878 5.0e-55 220.3 728 63.5
CiPaw.07G078900 Carya illinoinensis HOM05D007057 ORTHO05D008878 8.8e-52 209.5 605 66.1
THA.LOC104823816 Tarenaya hassleriana HOM05D007057 ORTHO05D008878 1.1e-49 202.6 734 60.5
Ca_07967_v3 Cicer arietinum L. HOM05D007057 ORTHO05D008878 9.1e-49 199.5 714 57.8
Psat3g104800 Pisum sativum HOM05D007057 ORTHO05D008878 6.5e-47 193.4 712 61.4
Ciclev10013603m.g Citrus clementina HOM05D007057 ORTHO05D008878 1.4e-46 192.2 225 58.2
AL2G22040 Arabidopsis lyrata HOM05D007057 ORTHO05D008878 2.5e-46 191.4 717 63.3
FAN27G3162 Fragaria x ananassa HOM05D007057 ORTHO05D008878 3.2e-46 191.0 222 55.0
CARHR057050 Cardamine hirsuta HOM05D007057 ORTHO05D008878 4.2e-46 190.7 702 64.0
vmacro06001 Vaccinium macrocarpon HOM05D007057 ORTHO05D008878 7.2e-46 189.9 700 61.3
Rhsim03G0265600 Rhododendron simsii HOM05D007057 ORTHO05D008878 2.7e-45 188.0 741 59.8
CSS0046667 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 6.1e-45 186.8 224 60.3
Carub.0002s1110 Capsella rubella HOM05D007057 ORTHO05D008878 8.0e-45 186.4 720 64.9
Aa31LG2G2430 Aethionema arabicum HOM05D007057 ORTHO05D008878 5.2e-44 183.7 727 56.8
TAR362G1011 Trochodendron aralioides HOM05D007057 ORTHO05D008878 4.4e-43 180.6 715 58.9
AT1G65380 Arabidopsis thaliana HOM05D007057 ORTHO05D008878 1.8e-41 175.3 716 62.7
FAN28G1564 Fragaria x ananassa HOM05D007057 ORTHO05D008878 1.8e-41 175.3 209 54.1
AUR62000330 Chenopodium quinoa HOM05D007057 ORTHO05D008878 4.1e-41 174.1 709 61.1
Thhalv10018195m.g Eutrema salsugineum HOM05D007057 ORTHO05D008878 5.3e-41 173.7 723 63.1
Nitab4.5_0001857g0020 Nicotiana tabacum HOM05D007057 ORTHO05D008878 3.5e-40 171.0 700 62.9
AUR62006672 Chenopodium quinoa HOM05D007057 ORTHO05D008878 1.7e-39 168.7 709 60.5
A02p13180 Brassica napus HOM05D007057 ORTHO05D008878 3.8e-39 167.5 226 52.7
EL10Ac4g09982 Beta vulgaris HOM05D007057 ORTHO05D008878 5.0e-39 167.2 713 64.1
BcaB05g24110 Brassica carinata HOM05D007057 ORTHO05D008878 5.0e-39 167.2 224 53.6
C02p21340 Brassica napus HOM05D007057 ORTHO05D008878 5.0e-39 167.2 226 48.7
BraA02t06374Z Brassica rapa HOM05D007057 ORTHO05D008878 8.5e-39 166.4 226 53.1
Ah.04g158850 Amaranthus hybridus HOM05D007057 ORTHO05D008878 3.2e-38 164.5 719 61.2
BcaC03g14695 Brassica carinata HOM05D007057 ORTHO05D008878 3.2e-38 164.5 226 52.7
BolC2t08271H Brassica oleracea HOM05D007057 ORTHO05D008878 3.2e-38 164.5 226 52.7
Actinidia34764 Actinidia chinensis HOM05D007057 ORTHO05D008878 1.6e-37 162.2 691 59.6
Peaxi162Scf00976g00023 Petunia axillaris HOM05D007057 ORTHO05D008878 1.8e-36 158.7 225 55.6
Oeu010152.2 Olea europaea HOM05D007057 ORTHO05D008878 1.5e-35 155.6 729 55.8
Peaxi162Scf00006g00421 Petunia axillaris HOM05D007057 ORTHO05D008878 2.0e-35 155.2 225 54.7
Sp5g20120 Schrenkiella parvula HOM05D007057 ORTHO05D008878 2.0e-35 155.2 226 54.4
Aqoxy2G03299 Aquilegia oxysepala HOM05D007057 ORTHO05D008878 3.3e-35 154.5 720 61.0
DCAR_001923 Daucus carota HOM05D007057 ORTHO05D008878 4.4e-35 154.1 692 55.6
Nn4g26683 Nelumbo nucifera HOM05D007057 ORTHO05D008878 7.5e-35 153.3 711 64.4
Nitab4.5_0000946g0060 Nicotiana tabacum HOM05D007057 ORTHO05D008878 2.2e-34 151.8 227 54.2
Solyc04g056640.1 Solanum lycopersicum HOM05D007057 ORTHO05D008878 2.2e-34 151.8 224 54.5
Lsat_1_v5_gn_1_58361 Lactuca sativa HOM05D007057 ORTHO05D008878 8.2e-34 149.8 738 62.9
Phvul.008G055400 Phaseolus vulgaris HOM05D007057 ORTHO05D008878 3.1e-33 147.9 380 48.7
Sopen04g025560 Solanum pennellii HOM05D007057 ORTHO05D008878 4.1e-33 147.5 224 53.6
PGSC0003DMG400010523 Solanum tuberosum HOM05D007057 ORTHO05D008878 4.1e-33 147.5 225 53.3
MSTRG.8219 Avicennia marina HOM05D007057 ORTHO05D008878 4.5e-32 144.1 226 50.9
Cc09_g03450 Coffea canephora HOM05D007057 ORTHO05D008878 5.9e-32 143.7 696 59.1
CAN.G217.2 Capsicum annuum HOM05D007057 ORTHO05D008878 1.3e-31 142.5 730 57.9
PSO675G4505 Papaver somniferum HOM05D007057 ORTHO05D008878 1.7e-31 142.1 712 60.3
Migut.L01029 Erythranthe guttata HOM05D007057 ORTHO05D008878 2.9e-31 141.4 226 51.3
Sc16g0010320 Simmondsia chinensis HOM05D007057 ORTHO05D008878 2.9e-31 141.4 714 59.0
HanXRQChr01g0025821 Helianthus annuus HOM05D007057 ORTHO05D008878 1.6e-29 135.6 702 59.5
COL.COLO4_27405 Corchorus olitorius HOM05D007057 ORTHO05D008878 2.7e-29 134.8 162 63.6
CSS0018282 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 2.3e-28 131.7 201 53.7
CSS0040898 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 2.3e-28 131.7 201 53.7
MBI08_g39972_MAGBIO Magnolia biondii HOM05D007057 ORTHO05D008878 1.2e-27 129.4 728 60.2
ECA248G3256 Erigeron canadensis HOM05D007057 ORTHO05D008878 2.0e-27 128.6 222 49.1
CSS0040779 Camellia sinensis var. sinensis HOM05D007057 ORTHO05D008878 1.1e-25 122.9 201 52.7
HPP92_021394 Vanilla planifolia HOM05D007057 ORTHO05D008878 1.8e-25 122.1 701 52.6
SGA_v2.0_scaffold71G23872 Striga asiatica HOM05D007057 ORTHO05D008878 1.5e-22 112.5 222 50.0
PSO017G0140 Papaver somniferum HOM05D007057 ORTHO05D008878 3.0e-20 104.8 221 48.9
SalBow6G0986 Salvia bowleyana HOM05D007057 ORTHO05D008878 5.7e-19 100.5 703 58.9
ATR0824G263 Amborella trichopoda HOM05D007057 ORTHO05D008878 1.1e-14 86.3 186 47.3
BcaC03g14701 Brassica carinata HOM05D007057 ORTHO05D008878 4.3e-14 84.3 105 53.3
Os02g0603100 Oryza sativa ssp. japonica HOM05D007057 ORTHO05D008878 2.8e-13 81.6 226 41.6
BcaC03g14699 Brassica carinata HOM05D007057 ORTHO05D008878 6.8e-12 77.0 101 51.5
BcaB05g24109 Brassica carinata HOM05D007057 ORTHO05D008878 8.9e-12 76.6 105 60.0
Zm00001eb184050 Zea mays HOM05D007057 ORTHO05D008878 2.2e-10 72.0 227 41.0
SEGI_34516 Sequoiadendron giganteum HOM05D007057 ORTHO05D008878 2.4e-09 68.6 196 44.9
SEGI_35016 Sequoiadendron giganteum HOM05D007057 ORTHO05D008878 2.4e-09 68.6 196 44.9
FAN26G2527 Fragaria x ananassa HOM05D007057 ORTHO05D008878 7.0e-09 67.0 74 47.3
Manes.07G061900 Manihot esculenta HOM05D000071 ORTHO05D000029 3.9e-07 61.2 103 36.9
Manes.10G136600 Manihot esculenta HOM05D000071 ORTHO05D000029 3.9e-07 61.2 96 38.5
Manes.10G140410 Manihot esculenta HOM05D000071 ORTHO05D000029 3.9e-07 61.2 106 37.7
BcaC03g14697 Brassica carinata HOM05D007057 ORTHO05D008878 5.0e-07 60.8 96 49.0
Lj3g0019981 Lotus japonicus HOM05D000029 ORTHO05D002162 8.6e-07 60.1 112 33.9
MD05G1211500 Malus domestica HOM05D000029 ORTHO05D002162 8.6e-07 60.1 99 33.3
Manes.10G136800 Manihot esculenta HOM05D000071 ORTHO05D000029 8.6e-07 60.1 106 36.8
Prupe.4G145700 Prunus persica HOM05D000029 ORTHO05D002162 1.1e-06 59.7 96 34.4
BcaC06g32531 Brassica carinata HOM05D000029 ORTHO05D008567 1.5e-06 59.3 77 41.6
Cfa019774 Carpinus fangiana HOM05D000071 ORTHO05D000029 1.5e-06 59.3 63 44.4
TAR266G0003 Trochodendron aralioides HOM05D000071 ORTHO05D000029 1.5e-06 59.3 75 37.3
AUR62000327 Chenopodium quinoa HOM05D007057 ORTHO05D008878 2.5e-06 58.5 85 41.2
AUR62023560 Chenopodium quinoa HOM05D000029 ORTHO05D006810 2.5e-06 58.5 164 30.5
Manes.10G136700 Manihot esculenta HOM05D000071 ORTHO05D000029 3.3e-06 58.2 106 35.8
RcHm_v2.0_Chr2g0175321 Rosa chinensis HOM05D000071 ORTHO05D000029 3.3e-06 58.2 148 30.4
RcHm_v2.0_Chr5g0027271 Rosa chinensis HOM05D000029 ORTHO05D002162 3.3e-06 58.2 96 34.4
Sp6g35930 Schrenkiella parvula HOM05D000029 ORTHO05D008567 3.3e-06 58.2 107 33.6
Manes.10G137434 Manihot esculenta HOM05D000071 ORTHO05D000029 7.3e-06 57.0 106 35.8
CSS0009714 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 9.5e-06 56.6 99 32.3
CSS0042351 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 9.5e-06 56.6 99 32.3
Glyma.08G174500 Glycine max HOM05D000029 ORTHO05D002162 9.5e-06 56.6 92 38.0
Lsat_1_v5_gn_5_121160 Lactuca sativa HOM05D000029 ORTHO05D002162 9.5e-06 56.6 111 33.3


User provided reference genes

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