Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 7.9e-112 407.1 209 100.0
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 2.5e-65 252.7 215 68.8
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 1.4e-52 210.3 179 68.2
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 5.6e-49 198.4 212 54.2
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 3.6e-48 195.7 123 75.6
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 1.4e-47 193.7 215 55.3
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 1.8e-47 193.4 200 56.0
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 6.8e-47 191.4 213 53.5
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 1.5e-46 190.3 205 54.1
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 3.4e-46 189.1 213 58.2
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 4.4e-46 188.7 207 54.1
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 4.4e-46 188.7 152 62.5
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 1.7e-45 186.8 191 56.0
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.9e-45 186.0 189 54.5
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 3.8e-45 185.7 146 66.4
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 6.4e-45 184.9 126 73.0
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 6.4e-45 184.9 189 54.0
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 1.4e-44 183.7 207 54.6
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 1.4e-44 183.7 193 53.9
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 2.4e-44 183.0 213 52.6
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 4.2e-44 182.2 147 66.0
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 5.4e-44 181.8 206 53.4
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 7.1e-44 181.4 210 52.9
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 9.2e-44 181.0 191 53.9
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 1.2e-43 180.6 197 53.8
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.6e-43 180.3 217 52.1
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 1.6e-43 180.3 210 52.4
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 2.1e-43 179.9 202 53.5
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 2.7e-43 179.5 210 51.0
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 4.6e-43 178.7 217 51.2
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 4.6e-43 178.7 217 51.2
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 6.0e-43 178.3 195 52.3
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 7.8e-43 177.9 149 63.1
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 1.0e-42 177.6 208 52.4
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 1.3e-42 177.2 133 63.9
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 1.3e-42 177.2 212 51.4
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 1.7e-42 176.8 123 70.7
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 3.9e-42 175.6 205 53.2
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 3.9e-42 175.6 123 69.1
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 5.6e-41 171.8 223 47.1
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.6e-40 170.2 171 55.0
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 2.8e-40 169.5 136 61.0
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 3.6e-40 169.1 206 50.5
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 3.6e-40 169.1 206 50.5
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 3.6e-40 169.1 138 63.8
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 3.6e-40 169.1 134 59.7
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 8.1e-40 167.9 123 68.3
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 1.1e-39 167.5 136 62.5
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.4e-39 167.2 171 55.6
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 1.4e-39 167.2 124 66.1
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 6.9e-39 164.9 128 62.5
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 6.9e-39 164.9 125 67.2
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 9.0e-39 164.5 204 48.0
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 9.0e-39 164.5 129 61.2
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 1.2e-38 164.1 138 58.7
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 2.0e-38 163.3 187 51.9
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 5.8e-38 161.8 153 54.2
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 9.9e-38 161.0 132 57.6
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 2.2e-37 159.8 120 65.0
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 8.4e-37 157.9 133 61.7
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 8.4e-37 157.9 133 61.7
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 1.9e-36 156.8 125 64.0
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 1.9e-36 156.8 125 64.0
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 1.9e-36 156.8 130 59.2
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 1.9e-36 156.8 130 59.2
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 4.2e-36 155.6 134 57.5
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 5.4e-36 155.2 121 62.8
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 9.3e-36 154.5 208 45.2
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 2.7e-35 152.9 143 54.5
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 3.5e-35 152.5 143 54.5
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 3.5e-35 152.5 128 57.8
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 4.6e-35 152.1 206 46.6
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 4.6e-35 152.1 199 46.7
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 6.0e-35 151.8 183 48.1
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 6.0e-35 151.8 120 62.5
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 1.0e-34 151.0 196 46.9
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 1.3e-34 150.6 190 48.4
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 2.3e-34 149.8 118 62.7
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 3.0e-34 149.4 154 53.2
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 3.0e-34 149.4 119 58.8
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 3.9e-34 149.1 112 64.3
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 6.6e-34 148.3 103 68.0
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 8.7e-34 147.9 142 50.0
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 2.5e-33 146.4 136 52.9
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 2.5e-33 146.4 129 58.1
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 3.6e-32 142.5 193 48.7
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 3.6e-32 142.5 127 54.3
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 3.6e-32 142.5 126 52.4
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 8.1e-32 141.4 90 72.2
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 1.1e-31 141.0 200 44.5
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 3.1e-31 139.4 138 52.9
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 9.0e-31 137.9 138 52.2
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 1.2e-30 137.5 202 44.1
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 6.4e-29 131.7 181 45.3
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 6.4e-29 131.7 124 50.0
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 2.1e-27 126.7 96 67.7
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 2.8e-24 116.3 134 48.5
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 5.8e-22 108.6 114 51.8
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 6.5e-21 105.1 119 49.6
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 8.4e-21 104.8 95 52.6
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 4.2e-20 102.4 206 37.4
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 7.1e-20 101.7 200 37.5
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 9.3e-20 101.3 125 46.4
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 1.0e-18 97.8 73 61.6
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 1.1e-17 94.4 100 51.0
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 7.4e-17 91.7 141 38.3
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.6e-16 90.5 196 33.2
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 1.3e-13 80.9 114 38.6
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 2.2e-13 80.1 108 40.7
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 1.5e-09 67.4 56 58.9
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 9.7e-09 64.7 114 35.1
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 9.0e-07 58.2 123 30.9
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 3.4e-06 56.2 123 30.9
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 5.9e-06 55.5 119 31.1


User provided reference genes

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