Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004988 Sechium edule HOM05D003134 ORTHO05D003500 2.0e-74 282.3 140 100.0
ClCG01G005860 Citrullus lanatus HOM05D003134 ORTHO05D003500 5.4e-48 194.5 152 69.1
CsaV3_5G028830 Cucumis sativus L. HOM05D003134 ORTHO05D003500 5.4e-48 194.5 154 66.9
MELO3C005343.2 Cucumis melo HOM05D003134 ORTHO05D003500 1.1e-45 186.8 156 66.7
FvH4_4g26860 Fragaria vesca HOM05D003134 ORTHO05D003500 1.1e-29 133.7 142 54.2
FAN12G3405 Fragaria x ananassa HOM05D003134 ORTHO05D003500 3.3e-29 132.1 141 53.2
FAN22G0900 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.3e-28 130.2 147 53.1
Sed0018757 Sechium edule HOM05D003134 ORTHO05D003500 1.1e-27 127.1 144 52.1
RcHm_v2.0_Chr4g0434621 Rosa chinensis HOM05D003134 ORTHO05D003500 1.8e-27 126.3 147 51.7
FAN07G2257 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.3e-27 124.8 141 53.9
Manes.06G065600 Manihot esculenta HOM05D003134 ORTHO05D003500 9.9e-26 120.6 156 48.7
MD16G1038900 Malus domestica HOM05D003134 ORTHO05D003500 3.8e-25 118.6 146 52.7
Prupe.1G315800 Prunus persica HOM05D003134 ORTHO05D003500 3.8e-25 118.6 157 49.0
CiPaw.05G241000 Carya illinoinensis HOM05D003134 ORTHO05D003500 5.5e-24 114.8 156 48.7
Cpa.g.sc65.57 Carica papaya HOM05D003134 ORTHO05D003500 3.3e-21 105.5 162 42.6
TWI31G0745 Tripterygium wilfordii HOM05D003134 ORTHO05D003500 9.6e-21 104.0 165 43.6
CANSAT01G0067 Cannabis sativa HOM05D003134 ORTHO05D003500 2.1e-20 102.8 175 42.3
Duzib251G0591 Durio zibethinus HOM05D003134 ORTHO05D003500 2.1e-20 102.8 166 41.0
MD13G1036300 Malus domestica HOM05D003134 ORTHO05D003500 4.8e-20 101.7 155 44.5
Sabra10G0091400 Salix brachista HOM05D003134 ORTHO05D003500 4.8e-20 101.7 162 42.6
Thecc.02G223300 Theobroma cacao HOM05D003134 ORTHO05D003500 4.8e-20 101.7 160 42.5
Cfa015853 Carpinus fangiana HOM05D003134 ORTHO05D003500 6.2e-20 101.3 151 43.0
Nn3g17932 Nelumbo nucifera HOM05D003134 ORTHO05D003500 1.1e-19 100.5 163 46.0
FAN17G2365 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.4e-19 100.1 140 45.0
QL01p040313 Quercus lobata HOM05D003134 ORTHO05D003500 1.4e-19 100.1 164 40.2
Potri.010G121300 Populus trichocarpa HOM05D003134 ORTHO05D003500 4.0e-19 98.6 155 44.5
Cfa015852 Carpinus fangiana HOM05D003134 ORTHO05D003500 6.9e-19 97.8 149 41.6
Cfa015849 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.2e-18 97.1 152 42.8
COL.COLO4_32156 Corchorus olitorius HOM05D003134 ORTHO05D003500 7.6e-18 94.4 162 40.7
Glyma.20G119200 Glycine max HOM05D003134 ORTHO05D003500 7.6e-18 94.4 141 46.1
Gohir.D02G171600 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.9e-16 89.7 161 41.0
Gorai.005G193000 Gossypium raimondii HOM05D003134 ORTHO05D003500 1.9e-16 89.7 161 41.0
TAR374G1690 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.9e-16 89.7 154 43.5
Ciclev10016989m.g Citrus clementina HOM05D003134 ORTHO05D003500 2.5e-16 89.4 168 39.3
TAR433G0003 Trochodendron aralioides HOM05D003134 ORTHO05D003500 2.5e-16 89.4 155 42.6
Lalb_Chr02g0145791 Lupinus albus HOM05D003134 ORTHO05D003500 3.2e-16 89.0 145 46.2
Gohir.A03G148500 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.2e-15 87.0 161 40.4
Phvul.007G030600 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 1.6e-15 86.7 141 44.7
Dinv33962 Davidia involucrata HOM05D003134 ORTHO05D003500 2.1e-15 86.3 160 43.8
Hma1.2p1_1109F.1_g258190 Hydrangea macrophylla HOM05D003134 ORTHO05D003500 2.1e-15 86.3 157 43.3
VMungo0720G1250 Vigna mungo HOM05D000260 ORTHO05D000318 2.1e-15 86.3 146 43.8
CSS0042149 Camellia sinensis var. sinensis HOM05D003134 ORTHO05D003500 2.7e-15 85.9 161 41.6
SalBow5G3107 Salvia bowleyana HOM05D003134 ORTHO05D003500 3.5e-15 85.5 154 45.5
SalBow5G4218 Salvia bowleyana HOM05D003134 ORTHO05D003500 3.5e-15 85.5 154 45.5
Solyc02g086260.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 6.0e-15 84.7 158 44.3
THA.LOC104808293 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 6.0e-15 84.7 167 42.5
Oeu012577.1 Olea europaea HOM05D003134 ORTHO05D003500 1.3e-14 83.6 163 45.4
Sabra04G0066000 Salix brachista HOM05D003134 ORTHO05D003500 1.8e-14 83.2 154 39.0
Oeu012575.1 Olea europaea HOM05D003134 ORTHO05D003500 2.3e-14 82.8 163 45.4
FAN12G3727 Fragaria x ananassa HOM05D003134 ORTHO05D003500 3.9e-14 82.0 83 57.8
Atru.chr1.1630 Acer truncatum HOM05D003134 ORTHO05D003500 5.1e-14 81.6 154 41.6
Cpa.g.sc170.42 Carica papaya HOM05D003134 ORTHO05D003500 5.1e-14 81.6 166 42.8
SalBow3G2725 Salvia bowleyana HOM05D003134 ORTHO05D003500 5.1e-14 81.6 154 42.2
CANSAT78G1475 Cannabis sativa HOM05D003134 ORTHO05D003500 1.5e-13 80.1 173 42.8
Dinv34801 Davidia involucrata HOM05D003134 ORTHO05D003500 1.9e-13 79.7 160 41.9
Duzib268G0372 Durio zibethinus HOM05D003134 ORTHO05D003500 1.9e-13 79.7 159 39.6
Medtr1g110190 Medicago truncatula HOM05D003134 ORTHO05D003500 1.9e-13 79.7 145 42.8
Oeu039736.1 Olea europaea HOM05D003134 ORTHO05D003500 1.9e-13 79.7 160 43.8
Potri.017G117866 Populus trichocarpa HOM05D003134 ORTHO05D003500 3.3e-13 79.0 147 40.1
SGA_v2.0_scaffold49G18114 Striga asiatica HOM05D003134 ORTHO05D003500 4.3e-13 78.6 151 43.0
PGR119G2525 Punica granatum HOM05D003134 ORTHO05D003500 5.7e-13 78.2 162 39.5
Psat6g225360 Pisum sativum HOM05D003134 ORTHO05D003500 7.4e-13 77.8 151 41.1
THA.LOC104823851 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 9.6e-13 77.4 153 42.5
MBI16_g37123_MAGBIO Magnolia biondii HOM05D003134 ORTHO05D003500 1.3e-12 77.0 153 40.5
Sp5g23500 Schrenkiella parvula HOM05D003134 ORTHO05D003500 1.6e-12 76.6 158 42.4
DCAR_021449 Daucus carota HOM05D003134 ORTHO05D003500 2.1e-12 76.3 148 41.9
Lj4P188T25 Lonicera japonica HOM05D003134 ORTHO05D003500 3.7e-12 75.5 158 40.5
PGR042G1462 Punica granatum HOM05D003134 ORTHO05D003500 3.7e-12 75.5 155 42.6
TPR.G36596 Trifolium pratense HOM05D003134 ORTHO05D003500 1.1e-11 73.9 164 40.2
Manes.02G070500 Manihot esculenta HOM05D003134 ORTHO05D003500 1.4e-11 73.6 155 40.0
A07p32020 Brassica napus HOM05D003134 ORTHO05D003500 1.8e-11 73.2 152 42.8
BraA07t30832Z Brassica rapa HOM05D003134 ORTHO05D003500 1.8e-11 73.2 152 42.8
Sp7g03820 Schrenkiella parvula HOM05D003134 ORTHO05D003500 2.4e-11 72.8 160 43.1
Ciclev10013038m.g Citrus clementina HOM05D003134 ORTHO05D003500 3.1e-11 72.4 150 41.3
Glyma.18G294900 Glycine max HOM05D003134 ORTHO05D003500 3.1e-11 72.4 155 37.4
Peaxi162Scf00104g00142 Petunia axillaris HOM05D003134 ORTHO05D003500 3.1e-11 72.4 146 42.5
Potri.004G097200 Populus trichocarpa HOM05D003134 ORTHO05D003500 3.1e-11 72.4 152 36.8
Nitab4.5_0000625g0110 Nicotiana tabacum HOM05D003134 ORTHO05D003500 4.1e-11 72.0 162 42.6
Psat3g098080 Pisum sativum HOM05D003134 ORTHO05D003500 4.1e-11 72.0 163 40.5
THA.LOC104805579 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 4.1e-11 72.0 173 39.9
HanXRQChr12g0375681 Helianthus annuus HOM05D003134 ORTHO05D003500 5.3e-11 71.6 157 38.2
Nitab4.5_0015828g0010 Nicotiana tabacum HOM05D003134 ORTHO05D003500 6.9e-11 71.2 162 41.4
Ca_08085_v3 Cicer arietinum L. HOM05D003134 ORTHO05D003500 9.0e-11 70.9 159 40.3
Medtr7g082520 Medicago truncatula HOM05D003134 ORTHO05D003500 9.0e-11 70.9 168 36.9
Sc10g0001080 Simmondsia chinensis HOM05D003134 ORTHO05D003500 9.0e-11 70.9 160 38.8
MELO3C008147.2 Cucumis melo HOM05D003134 ORTHO05D003500 1.2e-10 70.5 171 36.3
MD17G1247700 Malus domestica HOM05D003134 ORTHO05D003500 1.2e-10 70.5 171 39.2
Manes.01G112200 Manihot esculenta HOM05D003134 ORTHO05D003500 1.2e-10 70.5 163 41.1
Solyc03g034300.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 1.2e-10 70.5 153 39.9
TAR622G0779 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.2e-10 70.5 155 38.1
TAR622G1269 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.2e-10 70.5 155 38.1
Cc07_g08620 Coffea canephora HOM05D003134 ORTHO05D003500 1.5e-10 70.1 165 41.2
Glyma.02G088600 Glycine max HOM05D003134 ORTHO05D003500 1.5e-10 70.1 156 37.8
AT1G66890 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 2.0e-10 69.7 161 41.0
BcaC08g45971 Brassica carinata HOM05D003134 ORTHO05D003500 2.0e-10 69.7 154 40.9
C06p37610 Brassica napus HOM05D003134 ORTHO05D003500 2.0e-10 69.7 154 40.9
BolC6t38864H Brassica oleracea HOM05D003134 ORTHO05D003500 2.0e-10 69.7 154 40.9
unitig_0.g841 Utricularia gibba HOM05D003134 ORTHO05D003500 2.0e-10 69.7 141 39.7
Actinidia17642 Actinidia chinensis HOM05D003134 ORTHO05D003500 3.4e-10 68.9 153 40.5
Rhsim08G0083300 Rhododendron simsii HOM05D003134 ORTHO05D003500 3.4e-10 68.9 158 37.3
BcaB03g15220 Brassica carinata HOM05D003134 ORTHO05D003500 4.5e-10 68.6 166 38.0
ClCG11G007810 Citrullus lanatus HOM05D003134 ORTHO05D003500 4.5e-10 68.6 162 36.4
Lalb_Chr06g0165891 Lupinus albus HOM05D003134 ORTHO05D003500 5.9e-10 68.2 149 39.6
C06p43260 Brassica napus HOM05D003134 ORTHO05D003500 7.6e-10 67.8 164 40.9
CiPaw.03G063500 Carya illinoinensis HOM05D003134 ORTHO05D003500 7.6e-10 67.8 186 37.6
AUR62009019 Chenopodium quinoa HOM05D003134 ORTHO05D003500 7.6e-10 67.8 177 36.2
AUR62023283 Chenopodium quinoa HOM05D003134 ORTHO05D003500 7.6e-10 67.8 177 33.9
CsaV3_2G033780 Cucumis sativus L. HOM05D003134 ORTHO05D003500 7.6e-10 67.8 166 36.1
Thhalv10019248m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 7.6e-10 67.8 165 39.4
Lj5g0013847 Lotus japonicus HOM05D003134 ORTHO05D003500 7.6e-10 67.8 154 39.0
Haze_14180 Corylus avellana HOM05D003134 ORTHO05D003500 1.0e-09 67.4 170 39.4
Eucgr.J01514 Eucalyptus grandis HOM05D003134 ORTHO05D003500 1.0e-09 67.4 155 40.0
AL2G25140 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 1.3e-09 67.0 163 39.3
BcaC08g46122 Brassica carinata HOM05D003134 ORTHO05D003500 1.3e-09 67.0 164 39.6
C06p41530 Brassica napus HOM05D003134 ORTHO05D003500 1.3e-09 67.0 157 36.3
BolC6t39271H Brassica oleracea HOM05D003134 ORTHO05D003500 1.3e-09 67.0 157 36.3
Migut.H00233 Erythranthe guttata HOM05D003134 ORTHO05D003500 1.7e-09 66.6 164 38.4
Oeu030792.1 Olea europaea HOM05D000260 ORTHO05D000318 1.7e-09 66.6 147 36.7
Sp5g21880 Schrenkiella parvula HOM05D003134 ORTHO05D003500 1.7e-09 66.6 163 38.7
A07p34840 Brassica napus HOM05D003134 ORTHO05D003500 2.2e-09 66.2 157 36.3
BraA07t31102Z Brassica rapa HOM05D003134 ORTHO05D003500 2.2e-09 66.2 157 36.3
Lsat_1_v5_gn_3_80541 Lactuca sativa HOM05D003134 ORTHO05D003500 2.2e-09 66.2 151 39.7
Carub.0002s1492 Capsella rubella HOM05D003134 ORTHO05D003500 2.9e-09 65.9 156 39.7
Phvul.008G007800 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 2.9e-09 65.9 149 38.3
PGSC0003DMG400002449 Solanum tuberosum HOM05D003134 ORTHO05D003500 2.9e-09 65.9 167 38.3
A02p14980 Brassica napus HOM05D003134 ORTHO05D003500 3.8e-09 65.5 153 38.6
BraA02t06565Z Brassica rapa HOM05D003134 ORTHO05D003500 3.8e-09 65.5 153 38.6
Thhalv10019521m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 3.8e-09 65.5 163 36.8
Lalb_Chr10g0091341 Lupinus albus HOM05D003134 ORTHO05D003500 3.8e-09 65.5 149 36.9
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 3.8e-09 65.5 112 46.4
Prupe.3G146400 Prunus persica HOM05D003134 ORTHO05D003500 5.0e-09 65.1 172 34.3
PGR004G0132 Punica granatum HOM05D003134 ORTHO05D003500 5.0e-09 65.1 165 37.0
Sed0007756 Sechium edule HOM05D003134 ORTHO05D003500 5.0e-09 65.1 166 37.3
Sopen03g007090 Solanum pennellii HOM05D003134 ORTHO05D003500 5.0e-09 65.1 156 38.5
VMungo1383G0351 Vigna mungo HOM05D003134 ORTHO05D003500 5.0e-09 65.1 158 37.3
BcaB03g15416 Brassica carinata HOM05D003134 ORTHO05D003500 6.5e-09 64.7 152 40.1
BcaC08g46282 Brassica carinata HOM05D003134 ORTHO05D003500 6.5e-09 64.7 157 35.7
Nitab4.5_0000753g0120 Nicotiana tabacum HOM05D003134 ORTHO05D003500 6.5e-09 64.7 89 55.1
Oeu008433.1 Olea europaea HOM05D003134 ORTHO05D003500 6.5e-09 64.7 159 36.5
AL2G27290 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 8.5e-09 64.3 153 37.3
BraA07t30998Z Brassica rapa HOM05D003134 ORTHO05D003500 8.5e-09 64.3 163 39.3
Migut.L00500 Erythranthe guttata HOM05D003134 ORTHO05D003500 8.5e-09 64.3 171 37.4
Oeu036853.1 Olea europaea HOM05D003134 ORTHO05D003500 8.5e-09 64.3 158 38.6
PGSC0003DMG400024380 Solanum tuberosum HOM05D003134 ORTHO05D003500 8.5e-09 64.3 167 37.7
C02p24530 Brassica napus HOM05D003134 ORTHO05D003500 1.1e-08 63.9 152 37.5
BolC2t08556H Brassica oleracea HOM05D003134 ORTHO05D003500 1.1e-08 63.9 153 38.6
Nn4g23933 Nelumbo nucifera HOM05D003134 ORTHO05D003500 1.1e-08 63.9 160 35.0
A07p33710 Brassica napus HOM05D003134 ORTHO05D003500 1.4e-08 63.5 165 38.8
FAN03G2307 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.4e-08 63.5 167 38.9
Gohir.A11G165400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.4e-08 63.5 167 34.1
RcHm_v2.0_Chr1g0326241 Rosa chinensis HOM05D003134 ORTHO05D003500 1.9e-08 63.2 174 37.4
Sed0003377 Sechium edule HOM05D003134 ORTHO05D003500 1.9e-08 63.2 158 36.1
PSO017G0284 Papaver somniferum HOM05D003134 ORTHO05D003500 2.5e-08 62.8 165 35.2
BcaB05g24377 Brassica carinata HOM05D003134 ORTHO05D003500 3.2e-08 62.4 153 37.9
CARHR059040 Cardamine hirsuta HOM05D003134 ORTHO05D003500 3.2e-08 62.4 170 35.9
Gohir.D11G171400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 4.2e-08 62.0 167 33.5
Gorai.007G183800 Gossypium raimondii HOM05D003134 ORTHO05D003500 4.2e-08 62.0 167 33.5
Lj1g0014230 Lotus japonicus HOM05D003134 ORTHO05D003500 4.2e-08 62.0 169 36.1
Ah.16g101650 Amaranthus hybridus HOM05D003134 ORTHO05D003500 5.5e-08 61.6 168 35.7
Aa31LG2G3400 Aethionema arabicum HOM05D003134 ORTHO05D003500 7.2e-08 61.2 176 35.2
BcaB03g15807 Brassica carinata HOM05D003134 ORTHO05D003500 7.2e-08 61.2 149 37.6
QL02p050634 Quercus lobata HOM05D003134 ORTHO05D003500 7.2e-08 61.2 194 35.1
Peaxi162Scf00394g00095 Petunia axillaris HOM05D003134 ORTHO05D003500 9.3e-08 60.8 92 51.1
FAN01G0579 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.2e-07 60.5 165 37.0
Cfa007900 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.6e-07 60.1 171 35.7
QL02p049588 Quercus lobata HOM05D003134 ORTHO05D003500 1.6e-07 60.1 188 35.1
EL10Ac2g04546 Beta vulgaris HOM05D003134 ORTHO05D003500 2.1e-07 59.7 180 34.4
BcaC08g46286 Brassica carinata HOM05D003134 ORTHO05D003500 2.1e-07 59.7 146 37.0
FAN14G3652 Fragaria x ananassa HOM05D003134 ORTHO05D003500 4.6e-07 58.5 165 36.4
CARHR061210 Cardamine hirsuta HOM05D003134 ORTHO05D003500 7.9e-07 57.8 150 35.3
FAN28G2684 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.0e-06 57.4 167 36.5
Lj2g0003840 Lotus japonicus HOM05D003134 ORTHO05D003500 1.0e-06 57.4 137 35.0
Duzib138G0856 Durio zibethinus HOM05D003134 ORTHO05D003500 1.3e-06 57.0 169 32.5
FAN02G1640 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.3e-06 57.0 169 36.7
FvH4_7g03610 Fragaria vesca HOM05D003134 ORTHO05D003500 2.3e-06 56.2 165 35.2
FAN06G4960 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.3e-06 56.2 165 35.2
Potri.008G123800 Populus trichocarpa HOM05D003134 ORTHO05D003500 3.0e-06 55.8 59 61.0
FAN10G2348 Fragaria x ananassa HOM05D003134 ORTHO05D003500 3.9e-06 55.5 167 36.5
Lsat_1_v5_gn_2_81120 Lactuca sativa HOM05D003134 ORTHO05D003500 3.9e-06 55.5 159 37.7
Duzib248G0302 Durio zibethinus HOM05D003134 ORTHO05D003500 5.1e-06 55.1 90 38.9
FAN23G1965 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.1e-06 55.1 165 35.2
PSO170G0811 Papaver somniferum HOM05D003134 ORTHO05D003500 6.7e-06 54.7 164 33.5
Aa31LG11G13410 Aethionema arabicum HOM05D003134 ORTHO05D003500 8.7e-06 54.3 162 34.0
AT1G68430 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 8.7e-06 54.3 154 35.7
AT5G16200 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 8.7e-06 54.3 166 33.7


User provided reference genes

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