Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 5.3e-68 260.8 120 100.0
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 1.7e-21 106.3 111 42.3
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 3.5e-19 98.6 107 43.9
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 3.2e-17 92.0 121 40.5
Sed0007263 Sechium edule HOM05D005672 ORTHO05D003038 3.2e-17 92.0 95 48.4
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 1.2e-16 90.1 98 40.8
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 2.3e-15 85.9 117 37.6
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 1.5e-14 83.2 98 37.8
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 1.5e-14 83.2 116 36.2
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 2.8e-13 79.0 108 35.2
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 6.3e-13 77.8 108 38.0
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 1.8e-12 76.3 110 34.5
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.1e-12 75.5 108 38.0
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 3.1e-12 75.5 118 37.3
Sed0004804 Sechium edule HOM05D005672 ORTHO05D003038 5.4e-12 74.7 96 39.6
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 5.4e-12 74.7 108 35.2
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 1.2e-11 73.6 109 32.1
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 1.2e-11 73.6 109 32.1
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.2e-11 73.6 106 39.6
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 1.6e-11 73.2 109 32.1
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 1.6e-11 73.2 118 35.6
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 2.0e-11 72.8 111 32.4
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 2.7e-11 72.4 111 33.3
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 2.7e-11 72.4 93 38.7
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 4.5e-11 71.6 121 36.4
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 4.5e-11 71.6 112 33.9
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 4.5e-11 71.6 106 32.1
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 5.9e-11 71.2 108 36.1
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 7.7e-11 70.9 68 45.6
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 7.7e-11 70.9 112 33.9
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 1.0e-10 70.5 99 37.4
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.3e-10 70.1 110 37.3
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 1.3e-10 70.1 109 33.9
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 1.7e-10 69.7 118 31.4
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 1.7e-10 69.7 93 36.6
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 1.7e-10 69.7 118 29.7
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 2.3e-10 69.3 105 33.3
MELO3C023363.2 Cucumis melo HOM05D005672 ORTHO05D003038 2.9e-10 68.9 110 35.5
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 3.8e-10 68.6 121 32.2
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 3.8e-10 68.6 106 31.1
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 5.0e-10 68.2 107 33.6
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 5.0e-10 68.2 103 33.0
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 5.0e-10 68.2 115 29.6
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 6.6e-10 67.8 118 33.9
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 2.5e-09 65.9 117 28.2
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 3.3e-09 65.5 117 28.2
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 3.3e-09 65.5 105 29.5
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 3.3e-09 65.5 106 31.1
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 4.2e-09 65.1 122 32.8
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 5.5e-09 64.7 116 29.3
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 7.2e-09 64.3 115 29.6
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 9.5e-09 63.9 122 32.8
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.2e-08 63.5 100 39.0
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 1.6e-08 63.2 101 31.7
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 1.6e-08 63.2 119 32.8
ClCG09G002260 Citrullus lanatus HOM05D005672 ORTHO05D003038 2.8e-08 62.4 93 33.3
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 2.8e-08 62.4 93 38.7
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 3.6e-08 62.0 109 31.2
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 4.7e-08 61.6 91 35.2
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 4.7e-08 61.6 86 34.9
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 4.7e-08 61.6 114 33.3
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 6.1e-08 61.2 86 36.0
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 6.1e-08 61.2 119 31.1
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 6.1e-08 61.2 111 34.2
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 6.1e-08 61.2 113 29.2
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 8.0e-08 60.8 119 31.1
PGR102G1467 Punica granatum HOM05D005672 ORTHO05D003038 8.0e-08 60.8 122 32.8
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.0e-07 60.5 123 32.5
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 1.0e-07 60.5 92 33.7
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.4e-07 60.1 111 29.7
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 1.4e-07 60.1 109 33.0
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 1.4e-07 60.1 109 33.0
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 1.4e-07 60.1 111 33.3
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 1.8e-07 59.7 80 35.0
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.8e-07 59.7 111 31.5
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 1.8e-07 59.7 116 31.9
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 2.3e-07 59.3 107 31.8
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 2.3e-07 59.3 102 31.4
Nn8g39241 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.0e-07 58.9 107 34.6
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.0e-07 58.9 102 33.3
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 3.0e-07 58.9 111 28.8
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 4.0e-07 58.5 78 34.6
CiPaw.02G152000 Carya illinoinensis HOM05D005672 ORTHO05D003038 4.0e-07 58.5 123 29.3
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 4.0e-07 58.5 66 40.9
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 4.0e-07 58.5 86 33.7
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 5.2e-07 58.2 109 33.0
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 5.2e-07 58.2 68 38.2
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 5.2e-07 58.2 107 29.0
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 6.8e-07 57.8 113 29.2
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 6.8e-07 57.8 117 29.1
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 8.9e-07 57.4 114 32.5
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 8.9e-07 57.4 124 29.8
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 8.9e-07 57.4 124 29.8
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 8.9e-07 57.4 92 33.7
Sed0013481 Sechium edule HOM05D005672 ORTHO05D003038 8.9e-07 57.4 87 37.9
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-06 57.0 112 29.5
CAN.G438.58 Capsicum annuum HOM05D005672 ORTHO05D003038 1.2e-06 57.0 56 41.1
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.2e-06 57.0 42 52.4
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.2e-06 57.0 92 33.7
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.2e-06 57.0 71 38.0
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 2.0e-06 56.2 109 30.3
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 2.0e-06 56.2 129 29.5
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 2.0e-06 56.2 109 30.3
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 2.0e-06 56.2 109 30.3
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 2.0e-06 56.2 109 30.3
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 2.6e-06 55.8 90 33.3
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.6e-06 55.8 83 34.9
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 2.6e-06 55.8 71 33.8
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 2.6e-06 55.8 71 33.8
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 2.6e-06 55.8 71 33.8
Sed0008395 Sechium edule HOM05D005672 ORTHO05D003038 2.6e-06 55.8 112 30.4
Nn8g39243 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.4e-06 55.5 36 63.9
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 4.4e-06 55.1 131 29.0
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 5.7e-06 54.7 90 30.0
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 5.7e-06 54.7 84 31.0
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 7.5e-06 54.3 132 28.8
Nn8g39242 Nelumbo nucifera HOM05D005672 ORTHO05D003038 7.5e-06 54.3 36 63.9
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 7.5e-06 54.3 116 30.2
Sopen03g039180 Solanum pennellii HOM05D005672 ORTHO05D003038 7.5e-06 54.3 56 37.5
DCAR_026309 Daucus carota HOM05D005672 ORTHO05D003038 9.8e-06 53.9 101 29.7


User provided reference genes

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