Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 0.0e+00 1100.1 555 100.0
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 3.4e-271 937.9 558 84.8
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 5.7e-266 920.6 554 83.9
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 1.1e-264 916.4 554 83.6
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 3.1e-203 712.2 558 64.7
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 3.1e-203 712.2 550 64.4
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 1.9e-200 703.0 562 63.3
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 3.5e-199 698.7 555 63.4
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 4.7e-196 688.3 554 63.0
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 5.2e-195 684.9 561 61.5
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 6.8e-195 684.5 551 63.2
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 9.9e-194 680.6 557 62.3
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 4.1e-192 675.2 557 61.8
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 5.4e-192 674.9 562 60.5
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 1.3e-190 670.2 573 61.3
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 3.9e-190 668.7 565 61.6
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 9.0e-187 657.5 560 60.0
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 1.5e-186 656.8 554 59.4
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.5e-186 656.8 561 59.9
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 2.0e-186 656.4 562 59.1
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 1.3e-185 653.7 473 67.4
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 1.1e-184 650.6 588 58.8
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.1e-184 650.6 562 59.1
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 1.1e-184 650.6 551 60.8
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 1.4e-184 650.2 551 59.5
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.9e-184 649.8 562 58.5
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 2.4e-184 649.4 550 59.8
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 4.2e-184 648.7 555 60.0
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 5.4e-184 648.3 562 59.6
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 7.1e-184 647.9 563 60.0
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.3e-182 643.7 562 58.5
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 2.3e-182 642.9 564 59.6
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 3.9e-182 642.1 562 58.4
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 8.7e-182 641.0 553 59.3
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 1.9e-181 639.8 532 60.7
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 7.3e-181 637.9 472 66.7
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 2.8e-180 636.0 556 59.4
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 3.6e-180 635.6 553 59.9
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.8e-180 635.2 553 59.0
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 8.1e-180 634.4 565 57.0
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 1.4e-179 633.6 548 58.9
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 4.0e-179 632.1 559 57.8
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 1.2e-178 630.6 532 59.8
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.5e-178 630.2 560 58.6
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.5e-178 630.2 527 60.5
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 2.6e-178 629.4 561 56.9
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 3.4e-178 629.0 564 57.8
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 3.4e-178 629.0 532 60.2
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 4.5e-178 628.6 608 55.6
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 5.8e-178 628.2 559 57.6
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 4.9e-177 625.2 561 56.7
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 6.4e-177 624.8 546 59.0
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.1e-176 624.0 472 64.0
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 5.4e-176 621.7 549 57.9
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 7.9e-175 617.8 561 57.4
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 1.0e-174 617.5 561 56.7
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 1.0e-174 617.5 530 58.3
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 2.3e-174 616.3 556 58.1
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 5.1e-174 615.1 543 58.4
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 3.3e-173 612.5 535 57.8
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 3.3e-173 612.5 533 58.3
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.6e-172 610.1 543 58.0
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 4.8e-172 608.6 572 55.2
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 8.1e-172 607.8 564 55.5
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 1.8e-171 606.7 516 60.7
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 2.4e-171 606.3 577 55.3
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 2.4e-171 606.3 551 56.6
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.4e-171 606.3 512 59.8
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.4e-171 606.3 565 55.4
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 2.4e-171 606.3 554 55.6
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 5.8e-170 601.7 547 57.6
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 5.8e-170 601.7 554 56.3
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 2.2e-169 599.7 567 54.7
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 4.9e-169 598.6 567 54.7
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 6.4e-169 598.2 564 54.6
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 6.4e-169 598.2 564 53.9
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 8.4e-169 597.8 564 54.6
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 5.5e-168 595.1 556 55.6
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.6e-167 593.6 744 45.3
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 6.0e-167 591.7 553 55.5
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 3.0e-166 589.3 564 54.4
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 5.1e-166 588.6 552 55.3
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.9e-165 586.6 573 53.8
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 1.6e-164 583.6 553 55.5
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 2.6e-162 576.2 552 53.6
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 1.3e-161 573.9 479 59.5
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 8.4e-161 571.2 480 59.6
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 3.0e-158 562.8 504 56.3
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 8.8e-150 534.6 527 53.1
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 4.3e-149 532.3 467 58.7
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 1.2e-146 524.2 570 49.1
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 4.1e-139 499.2 555 49.2
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.2e-137 493.4 508 51.0
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 3.2e-136 489.6 315 74.3
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 4.7e-135 485.7 527 48.6
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 1.1e-133 481.1 433 57.0
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 8.0e-119 431.8 581 42.9
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 2.6e-109 400.2 389 50.9
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.1e-107 394.8 407 50.4
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.1e-104 384.8 503 42.9
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 3.3e-104 383.3 464 44.2
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 7.3e-104 382.1 504 44.6
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 2.6e-101 373.6 264 69.3
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 9.8e-101 371.7 335 55.2
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 2.7e-98 363.6 524 39.5
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.7e-74 283.9 397 40.8
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 8.4e-68 262.3 360 37.5
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.4e-67 261.5 175 76.6
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.4e-67 261.5 174 75.9
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.4e-67 261.5 328 40.2
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 1.2e-66 258.5 536 32.1
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 5.1e-65 253.1 280 47.1
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.6e-61 240.7 288 45.1
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.7e-52 211.5 140 75.0
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 5.7e-40 169.9 123 62.6
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 3.7e-39 167.2 174 47.7
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 8.2e-39 166.0 122 70.5
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.6e-29 134.4 246 37.0
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.9e-28 131.0 105 61.0
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 2.3e-25 121.3 216 35.6
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 8.2e-23 112.8 80 67.5
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 2.0e-21 108.2 85 62.4
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 9.4e-19 99.4 70 64.3
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.2e-18 99.0 327 24.2
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 3.0e-17 94.4 112 44.6
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.9e-17 94.0 214 30.4
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 4.4e-16 90.5 155 34.8
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 7.4e-16 89.7 100 47.0
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 5.0e-12 77.0 58 69.0
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 2.5e-11 74.7 177 29.9
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 2.5e-11 74.7 80 48.8
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 3.2e-11 74.3 253 25.3
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 7.2e-11 73.2 129 37.2
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 1.2e-10 72.4 82 47.6
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 6.1e-10 70.1 138 33.3
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 1.5e-08 65.5 69 46.4
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 4.1e-06 57.4 32 75.0
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 5.3e-06 57.0 89 43.8


User provided reference genes

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