Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 8.8e-131 470.3 241 100.0
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 4.4e-114 414.8 246 88.2
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 6.3e-113 411.0 245 87.8
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.2e-111 406.8 246 87.0
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 6.8e-99 364.4 250 76.8
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 2.6e-98 362.5 250 76.4
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 2.4e-96 355.9 250 75.6
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.2e-96 355.5 251 76.9
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 3.2e-96 355.5 251 75.3
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 4.1e-96 355.1 250 76.0
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 5.4e-96 354.8 252 77.8
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 5.4e-96 354.8 252 77.4
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.0e-96 354.4 251 76.5
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 9.2e-96 354.0 249 75.9
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 9.2e-96 354.0 247 76.1
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.0e-95 352.8 251 76.1
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 2.0e-95 352.8 251 77.3
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 2.7e-95 352.4 252 75.0
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.0e-94 349.0 248 75.0
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 3.0e-94 349.0 253 73.1
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 3.0e-94 349.0 251 73.3
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 6.6e-94 347.8 256 73.4
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.5e-93 346.7 251 74.5
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.5e-93 346.7 248 76.2
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.9e-93 346.3 249 74.7
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 4.3e-93 345.1 247 74.1
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 5.6e-93 344.7 251 72.1
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 5.6e-93 344.7 249 75.1
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 7.3e-93 344.4 248 74.6
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 9.5e-93 344.0 254 73.6
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.2e-92 343.6 247 73.7
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.1e-92 342.8 248 74.6
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.8e-92 342.4 247 73.3
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-91 340.5 251 70.9
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.4e-91 340.1 249 73.5
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 2.3e-91 339.3 251 74.1
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 2.3e-91 339.3 250 74.4
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.3e-91 339.3 249 73.5
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 3.1e-91 339.0 251 73.3
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 5.2e-91 338.2 268 68.3
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 6.8e-91 337.8 251 70.5
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 6.8e-91 337.8 255 72.9
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 1.2e-90 337.0 245 73.1
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 2.0e-90 336.3 252 74.2
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 3.4e-90 335.5 258 69.8
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 5.8e-90 334.7 251 71.3
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.8e-90 334.7 251 70.1
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 5.8e-90 334.7 255 72.5
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 8.3e-89 330.9 247 71.3
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 1.9e-88 329.7 245 71.8
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.4e-88 329.3 250 72.8
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 4.1e-88 328.6 249 70.7
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 5.4e-88 328.2 251 71.7
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.2e-87 327.0 247 71.3
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 3.5e-87 325.5 251 70.1
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 3.5e-87 325.5 249 72.7
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.5e-87 325.5 247 70.4
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 6.0e-87 324.7 250 71.6
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 1.0e-86 323.9 258 70.2
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.3e-86 323.6 250 71.6
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.7e-86 323.2 249 71.9
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 1.7e-86 323.2 249 70.3
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 8.6e-86 320.9 220 77.7
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.1e-85 320.5 258 69.8
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.5e-85 320.1 250 70.4
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.5e-85 320.1 250 70.4
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.5e-85 320.1 250 70.4
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.9e-85 319.7 244 70.1
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 2.5e-85 319.3 250 70.4
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.3e-85 318.5 250 70.0
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 5.6e-85 318.2 251 69.7
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 9.5e-85 317.4 242 67.8
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 9.5e-85 317.4 250 70.0
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.2e-84 317.0 249 67.1
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 2.1e-84 316.2 246 67.1
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 2.1e-84 316.2 246 67.5
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 2.1e-84 316.2 252 66.3
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 2.1e-84 316.2 246 67.1
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 3.6e-84 315.5 249 67.9
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 3.6e-84 315.5 250 68.8
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 4.7e-84 315.1 250 70.0
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.1e-84 314.3 249 69.1
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 8.1e-84 314.3 249 67.1
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.4e-83 313.5 246 67.5
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.3e-83 312.8 248 67.3
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 3.1e-83 312.4 246 67.1
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 6.8e-83 311.2 246 65.9
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 6.8e-83 311.2 246 67.1
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 1.5e-82 310.1 252 66.7
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 1.5e-82 310.1 257 68.9
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 4.4e-82 308.5 247 67.2
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.4e-82 308.5 246 67.9
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 5.8e-82 308.1 317 58.4
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.8e-82 308.1 234 72.6
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 7.6e-82 307.8 246 65.9
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 9.9e-82 307.4 246 65.0
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.7e-81 306.6 246 65.9
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.7e-81 306.6 242 67.4
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.2e-81 306.2 248 66.1
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 4.9e-81 305.1 256 67.2
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 6.4e-81 304.7 247 66.0
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.4e-81 304.3 250 65.2
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 8.4e-81 304.3 248 69.4
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 8.4e-81 304.3 237 69.6
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.1e-80 303.9 241 68.5
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.4e-80 303.5 245 69.8
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 3.2e-80 302.4 253 64.0
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 9.2e-80 300.8 232 72.4
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.7e-79 299.3 220 72.3
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 4.6e-79 298.5 246 64.6
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 6.0e-79 298.1 266 65.4
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 6.0e-79 298.1 257 65.8
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 1.3e-78 297.0 250 64.8
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 1.3e-78 297.0 250 64.8
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 1.3e-78 297.0 250 64.8
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.3e-78 297.0 324 54.6
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.7e-78 296.6 251 65.7
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 2.3e-78 296.2 245 65.7
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.3e-78 296.2 206 74.3
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 3.9e-78 295.4 257 65.4
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.1e-77 293.9 238 69.3
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 2.5e-77 292.7 250 64.4
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 3.3e-77 292.4 229 69.0
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.6e-76 290.0 237 65.4
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.1e-76 289.7 237 65.4
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.1e-75 287.3 216 69.9
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.3e-73 280.4 242 62.8
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 4.9e-73 278.5 249 62.7
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.6e-71 273.5 253 60.1
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 3.5e-71 272.3 390 46.9
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 6.0e-71 271.6 245 61.2
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.6e-69 265.0 235 60.9
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 5.8e-66 255.0 250 57.6
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.2e-63 247.3 250 56.4
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.1e-63 246.5 239 61.9
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.5e-61 239.6 143 82.5
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 3.3e-61 239.2 244 57.4
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 3.3e-61 239.2 147 81.6
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.4e-59 233.8 253 52.2
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 6.9e-59 231.5 247 51.8
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 2.6e-58 229.6 136 83.1
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.5e-58 228.8 236 53.8
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.4e-56 223.0 168 70.2
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.6e-55 220.3 168 69.6
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.0e-54 217.6 167 68.9
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 9.6e-53 211.1 247 50.2
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.5e-45 186.4 244 46.7
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 2.1e-44 183.3 113 78.8
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 4.8e-44 182.2 117 79.5
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 6.9e-43 178.3 290 43.1
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.1e-40 171.0 187 52.4
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.0e-33 147.9 266 37.6
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 3.8e-33 146.0 134 64.2
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 3.9e-30 136.0 268 38.8
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 6.7e-30 135.2 130 63.1
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 3.8e-25 119.4 100 67.0
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 6.5e-25 118.6 91 60.4
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.1e-24 117.9 91 63.7
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 2.1e-23 113.6 69 78.3
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 4.1e-19 99.4 78 73.1
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 4.1e-19 99.4 94 59.6
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.7e-17 94.0 78 69.2
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 3.8e-17 92.8 110 38.2
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 7.2e-16 88.6 115 42.6
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 3.3e-13 79.7 120 47.5
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 8.2e-12 75.1 79 54.4
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 5.3e-11 72.4 81 49.4
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 2.0e-10 70.5 127 45.7
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 4.2e-08 62.8 95 40.0
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.2e-07 61.2 104 47.1


User provided reference genes

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