Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004807 Sechium edule HOM05D006264 ORTHO05D007739 1.1e-195 686.4 328 100.0
MELO3C010482.2 Cucumis melo HOM05D006264 ORTHO05D007739 5.3e-187 657.5 328 95.1
CsaV3_4G028200 Cucumis sativus L. HOM05D006264 ORTHO05D007739 4.5e-186 654.4 328 94.5
ClCG11G015780 Citrullus lanatus HOM05D006264 ORTHO05D007739 2.7e-175 618.6 308 94.8
Glyma.06G115200 Glycine max HOM05D006264 ORTHO05D007739 3.7e-172 608.2 327 85.3
Thecc.08G126800 Theobroma cacao HOM05D006264 ORTHO05D007739 2.4e-171 605.5 328 85.1
Phvul.009G127300 Phaseolus vulgaris HOM05D006264 ORTHO05D007739 3.4e-170 601.7 326 84.7
Ciclev10001823m.g Citrus clementina HOM05D006264 ORTHO05D007739 7.7e-170 600.5 328 83.8
Glyma.04G247500 Glycine max HOM05D006264 ORTHO05D007739 1.3e-169 599.7 327 84.1
QL09p034323 Quercus lobata HOM05D006264 ORTHO05D007739 1.3e-169 599.7 327 82.9
VMungo1309G2910 Vigna mungo HOM05D006264 ORTHO05D007739 1.3e-169 599.7 326 84.4
Lj1g0001411 Lotus japonicus HOM05D006264 ORTHO05D007739 3.8e-169 598.2 326 83.7
arahy.Tifrunner.gnm1.ann1.YYE7NP Arachis hypogaea HOM05D006264 ORTHO05D007739 2.5e-168 595.5 327 84.1
arahy.Tifrunner.gnm1.ann1.W8H4W4 Arachis hypogaea HOM05D006264 ORTHO05D007739 1.2e-167 593.2 327 83.8
Prupe.1G494700 Prunus persica HOM05D006264 ORTHO05D007739 2.1e-167 592.4 328 83.8
Medtr3g088580 Medicago truncatula HOM05D006264 ORTHO05D007739 2.7e-167 592.0 326 82.8
Lalb_Chr08g0241301 Lupinus albus HOM05D006264 ORTHO05D007739 6.1e-167 590.9 328 82.3
Lalb_Chr11g0066051 Lupinus albus HOM05D006264 ORTHO05D007739 7.9e-167 590.5 327 83.2
Ca_27657_v3 Cicer arietinum L. HOM05D006264 ORTHO05D007739 1.0e-166 590.1 327 83.8
Gohir.D06G045800 Gossypium hirsutum HOM05D006264 ORTHO05D007739 2.3e-166 589.0 317 85.5
Gorai.010G051000 Gossypium raimondii HOM05D006264 ORTHO05D007739 2.3e-166 589.0 317 85.5
MD15G1347000 Malus domestica HOM05D006264 ORTHO05D007739 3.0e-166 588.6 328 83.2
PGR044G1646 Punica granatum HOM05D006264 ORTHO05D007739 2.0e-165 585.9 328 82.6
TAR381G1225 Trochodendron aralioides HOM05D006264 ORTHO05D007739 2.6e-165 585.5 328 82.0
COL.COLO4_04990 Corchorus olitorius HOM05D006264 ORTHO05D007739 3.3e-165 585.1 328 82.6
Nn1g08814 Nelumbo nucifera HOM05D006264 ORTHO05D007739 5.7e-165 584.3 328 80.5
THA.LOC104810199 Tarenaya hassleriana HOM05D006264 ORTHO05D007739 7.4e-165 583.9 329 83.6
Dinv27304 Davidia involucrata HOM05D006264 ORTHO05D007739 3.7e-164 581.6 328 80.8
FAN15G0088 Fragaria x ananassa HOM05D006264 ORTHO05D007739 8.2e-164 580.5 329 81.5
TAR625G1219 Trochodendron aralioides HOM05D006264 ORTHO05D007739 1.4e-163 579.7 328 79.0
CANSAT11G2315 Cannabis sativa HOM05D006264 ORTHO05D007739 2.4e-163 578.9 328 81.7
CSS0035031 Camellia sinensis var. sinensis HOM05D006264 ORTHO05D007739 4.1e-163 578.2 328 79.9
Lj4C628G13 Lonicera japonica HOM05D006264 ORTHO05D007739 5.3e-163 577.8 329 80.5
FAN20G0424 Fragaria x ananassa HOM05D006264 ORTHO05D007739 7.0e-163 577.4 329 81.2
Actinidia29470 Actinidia chinensis HOM05D006264 ORTHO05D007739 1.6e-162 576.2 328 79.0
FAN24G2929 Fragaria x ananassa HOM05D006264 ORTHO05D007739 2.6e-162 575.5 327 81.0
RcHm_v2.0_Chr6g0295971 Rosa chinensis HOM05D006264 ORTHO05D007739 3.5e-162 575.1 328 80.8
Sp1g19320 Schrenkiella parvula HOM05D006264 ORTHO05D007739 7.7e-162 573.9 330 81.2
Aa31LG7G5740 Aethionema arabicum HOM05D006264 ORTHO05D007739 1.0e-161 573.5 330 81.8
Eucgr.F04347 Eucalyptus grandis HOM05D006264 ORTHO05D007739 1.0e-161 573.5 328 80.5
CARHR022150 Cardamine hirsuta HOM05D006264 ORTHO05D007739 6.5e-161 570.9 330 80.3
BcaB07g32175 Brassica carinata HOM05D006264 ORTHO05D007739 1.1e-160 570.1 330 80.6
Oeu040415.1 Olea europaea HOM05D006264 ORTHO05D007739 3.2e-160 568.5 328 79.0
TPR.G13464 Trifolium pratense HOM05D006264 ORTHO05D007739 4.2e-160 568.2 327 80.4
MSTRG.1441 Avicennia marina HOM05D006264 ORTHO05D007739 5.5e-160 567.8 328 78.0
PGSC0003DMG400000884 Solanum tuberosum HOM05D006264 ORTHO05D007739 7.2e-160 567.4 328 78.0
BcaC05g26098 Brassica carinata HOM05D006264 ORTHO05D007739 2.1e-159 565.8 330 80.3
Nitab4.5_0001996g0020 Nicotiana tabacum HOM05D006264 ORTHO05D007739 3.6e-159 565.1 325 76.3
Cc10_g12020 Coffea canephora HOM05D006264 ORTHO05D007739 6.1e-159 564.3 328 76.5
A06p17870 Brassica napus HOM05D006264 ORTHO05D007739 1.0e-158 563.5 346 77.5
Solyc11g012830.3 Solanum lycopersicum HOM05D006264 ORTHO05D007739 1.0e-158 563.5 328 77.1
AT1G21760 Arabidopsis thaliana HOM05D006264 ORTHO05D007739 1.8e-158 562.8 330 79.1
arahy.Tifrunner.gnm1.ann1.9W7Z3M Arachis hypogaea HOM05D006264 ORTHO05D007739 1.8e-158 562.8 335 79.4
Sc02g0005000 Simmondsia chinensis HOM05D006264 ORTHO05D007739 1.8e-158 562.8 325 78.2
BraA06t24877Z Brassica rapa HOM05D006264 ORTHO05D007739 3.0e-158 562.0 340 77.9
TWI60G1034 Tripterygium wilfordii HOM05D006264 ORTHO05D007739 5.2e-158 561.2 327 78.9
CAN.G2.26 Capsicum annuum HOM05D006264 ORTHO05D007739 6.7e-158 560.8 325 77.5
BolC5t30776H Brassica oleracea HOM05D006264 ORTHO05D007739 4.4e-157 558.1 337 78.0
Hund17298 Selenicereus undatus HOM05D006264 ORTHO05D007739 5.7e-157 557.8 325 79.7
CiPaw.05G220800 Carya illinoinensis HOM05D006264 ORTHO05D007739 7.5e-157 557.4 328 79.0
Haze_00430 Corylus avellana HOM05D006264 ORTHO05D007739 1.7e-156 556.2 341 78.3
FvH4_2g27090 Fragaria vesca HOM05D006264 ORTHO05D007739 1.7e-156 556.2 326 77.3
Carub.0001s2122 Capsella rubella HOM05D006264 ORTHO05D007739 1.4e-155 553.1 330 78.2
vmacro00839 Vaccinium macrocarpon HOM05D006264 ORTHO05D007739 2.2e-153 545.8 328 75.6
Rhsim11G0069200 Rhododendron simsii HOM05D006264 ORTHO05D007739 1.5e-152 543.1 326 75.5
Migut.C01127 Erythranthe guttata HOM05D006264 ORTHO05D007739 5.5e-152 541.2 328 75.9
EL10Ac1g01023 Beta vulgaris HOM05D006264 ORTHO05D007739 9.4e-152 540.4 328 76.5
Duzib093G0816 Durio zibethinus HOM05D006264 ORTHO05D007739 2.1e-151 539.3 328 78.0
C05p20770 Brassica napus HOM05D006264 ORTHO05D007739 4.7e-151 538.1 312 79.2
HanXRQChr05g0151071 Helianthus annuus HOM05D006264 ORTHO05D007739 4.7e-151 538.1 328 72.9
Aqoxy6G00234 Aquilegia oxysepala HOM05D006264 ORTHO05D007739 3.0e-150 535.4 318 76.1
MBI16_g07653_MAGBIO Magnolia biondii HOM05D006264 ORTHO05D007739 4.0e-150 535.0 328 73.2
Peaxi162Scf00914g00315 Petunia axillaris HOM05D006264 ORTHO05D007739 3.7e-148 528.5 297 77.8
PSO528G0109 Papaver somniferum HOM05D006264 ORTHO05D007739 4.1e-147 525.0 328 72.9
PSO170G1538 Papaver somniferum HOM05D006264 ORTHO05D007739 9.1e-147 523.9 328 72.6
AUR62019071 Chenopodium quinoa HOM05D006264 ORTHO05D007739 1.2e-146 523.5 325 73.8
AUR62014328 Chenopodium quinoa HOM05D006264 ORTHO05D007739 7.7e-146 520.8 325 73.5
SGA_v2.0_scaffold24G10459 Striga asiatica HOM05D006264 ORTHO05D007739 1.0e-145 520.4 328 73.8
Manes.02G164400 Manihot esculenta HOM05D006264 ORTHO05D007739 1.3e-145 520.0 328 73.2
PSO063G0125 Papaver somniferum HOM05D006264 ORTHO05D007739 8.5e-145 517.3 328 71.6
CDE02G1850 Ceratophyllum demersum HOM05D006264 ORTHO05D007739 1.2e-143 513.5 328 69.8
Nitab4.5_0001803g0010 Nicotiana tabacum HOM05D006264 ORTHO05D007739 1.0e-142 510.4 312 73.4
ATR0584G291 Amborella trichopoda HOM05D006264 ORTHO05D007739 4.4e-141 505.0 315 72.4
Potri.005G178600 Populus trichocarpa HOM05D006264 ORTHO05D007739 4.4e-141 505.0 328 72.9
Potri.002G082500 Populus trichocarpa HOM05D006264 ORTHO05D007739 7.5e-141 504.2 328 71.3
GSVIVG01008855001 Vitis vinifera HOM05D006264 ORTHO05D007739 2.8e-140 502.3 328 72.9
Lsat_1_v5_gn_6_112861 Lactuca sativa HOM05D006264 ORTHO05D007739 5.4e-139 498.0 326 69.9
QL09p034368 Quercus lobata HOM05D006264 ORTHO05D007739 1.6e-130 469.9 253 82.6
HPP92_004401 Vanilla planifolia HOM05D006264 ORTHO05D007739 2.5e-128 462.6 325 64.3
HPP92_027807 Vanilla planifolia HOM05D006264 ORTHO05D007739 4.3e-128 461.8 325 64.0
THA.LOC104801868 Tarenaya hassleriana HOM05D006264 ORTHO05D007739 2.8e-127 459.1 255 82.4
Thhalv10008543m.g Eutrema salsugineum HOM05D006264 ORTHO05D007739 1.5e-125 453.4 256 80.5
AL1G34960 Arabidopsis lyrata HOM05D006264 ORTHO05D007739 6.4e-124 448.0 254 79.9
unitig_748.g7689 Utricularia gibba HOM05D006264 ORTHO05D007739 7.0e-123 444.5 317 65.9
Gohir.A06G045300 Gossypium hirsutum HOM05D006264 ORTHO05D007739 2.3e-121 439.5 248 83.1
Zm00001eb422580 Zea mays HOM05D006264 ORTHO05D007739 1.1e-120 437.2 328 59.8
Sabra02G0064700 Salix brachista HOM05D006264 ORTHO05D007739 1.5e-120 436.8 328 64.3
SMO347G0097 Selaginella moellendorffii HOM05D006264 ORTHO05D007739 2.5e-120 436.0 309 64.4
ECA246G2185 Erigeron canadensis HOM05D006264 ORTHO05D007739 9.5e-120 434.1 277 71.1
Pp3c3_38060 Physcomitrium patens HOM05D006264 ORTHO05D007739 9.5e-120 434.1 306 64.1
Mapoly0151s0012 Marchantia polymorpha HOM05D006264 ORTHO05D007739 2.8e-111 406.0 317 57.4
AagrBONN_evm.TU.Sc2ySwM_117.473 Anthoceros agrestis HOM05D006264 ORTHO05D007739 1.4e-110 403.7 309 59.2
DCAR_028205 Daucus carota HOM05D006264 ORTHO05D007739 6.4e-108 394.8 254 72.0
Atru.chr13.1491 Acer truncatum HOM05D006264 ORTHO05D007739 6.4e-100 368.2 220 79.5
Sopen11g007570 Solanum pennellii HOM05D006264 ORTHO05D007739 1.8e-94 350.1 198 80.3
CBR_g39544 Chara braunii HOM05D006264 ORTHO05D007739 6.6e-89 331.6 312 51.0
Psat5g086280 Pisum sativum HOM05D006264 ORTHO05D007739 1.3e-84 317.4 166 84.3
Cpa.g.c35582 Carica papaya HOM05D006264 ORTHO05D007739 9.1e-62 241.5 144 78.5
Psat5g086240 Pisum sativum HOM05D006264 ORTHO05D007739 1.8e-57 227.3 132 80.3
Cpa.g.sc418.8 Carica papaya HOM05D006264 ORTHO05D007739 6.5e-52 208.8 115 83.5
Os04g0431200 Oryza sativa ssp. japonica HOM05D006264 ORTHO05D007739 1.4e-49 201.1 142 61.3
MCO07G330 Micromonas commoda HOM05D006264 ORTHO05D007739 8.2e-47 191.8 312 36.5
PRCOL_00004228 Prasinoderma coloniale HOM05D006264 ORTHO05D007739 1.6e-45 187.6 253 38.3
Cre06.g254450 Chlamydomonas reinhardtii HOM05D006264 ORTHO05D007739 4.4e-40 169.5 308 32.5
Medtr4g068980 Medicago truncatula HOM05D006264 ORTHO05D007739 5.2e-33 146.0 82 79.3
arahy.Tifrunner.gnm1.ann1.XAL0CN Arachis hypogaea HOM05D003584 ORTHO05D004148 2.8e-31 140.2 107 59.8
SEGI_39749 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 1.8e-30 137.5 111 60.4
Atru.chr13.1492 Acer truncatum HOM05D006264 ORTHO05D007739 3.2e-27 126.7 72 80.6
Zm00001eb082740 Zea mays HOM05D006264 ORTHO05D007739 7.2e-27 125.6 133 48.1
Cpa.g.c45459 Carica papaya HOM05D006264 ORTHO05D007739 3.6e-26 123.2 77 76.6
SEGI_38549 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 2.3e-25 120.6 68 70.6
Migut.B01582 Erythranthe guttata HOM05D006264 ORTHO05D007739 1.5e-19 101.3 58 75.9
PGSC0003DMG400006698 Solanum tuberosum HOM05D006264 ORTHO05D007739 2.6e-16 90.5 69 58.0
SEGI_08627 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 1.2e-08 65.1 40 67.5
Rhsim11G0069000 Rhododendron simsii HOM05D006264 ORTHO05D007739 1.5e-08 64.7 62 54.8
Actinidia03465 Actinidia chinensis HOM05D006264 ORTHO05D007739 2.6e-08 63.9 36 75.0


User provided reference genes

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