Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004805 Sechium edule HOM05D000001 ORTHO05D004044 2.0e-239 832.0 422 100.0
MELO3C016924.2 Cucumis melo HOM05D000001 ORTHO05D004044 6.8e-187 657.5 421 83.6
ClCG05G015870 Citrullus lanatus HOM05D000001 ORTHO05D004044 8.9e-187 657.1 421 82.7
CsaV3_4G036160 Cucumis sativus L. HOM05D000001 ORTHO05D004044 2.4e-184 649.0 421 82.4
Sed0025024 Sechium edule HOM05D000001 ORTHO05D004044 5.8e-178 627.9 422 79.1
Manes.16G087000 Manihot esculenta HOM05D000001 ORTHO05D004044 4.2e-128 462.2 428 61.0
FvH4_2g30791 Fragaria vesca HOM05D000001 ORTHO05D004044 1.6e-127 460.3 425 61.6
FAN20G1082 Fragaria x ananassa HOM05D000001 ORTHO05D004044 2.3e-126 456.4 425 61.2
FAN27G1566 Fragaria x ananassa HOM05D000001 ORTHO05D004044 8.8e-126 454.5 425 60.9
QL02p017294 Quercus lobata HOM05D000001 ORTHO05D004044 3.3e-125 452.6 421 60.3
Atru.chr7.1828 Acer truncatum HOM05D000001 ORTHO05D004044 5.7e-125 451.8 421 59.4
COL.COLO4_21160 Corchorus olitorius HOM05D000001 ORTHO05D004044 1.7e-124 450.3 425 60.2
MD15G1047700 Malus domestica HOM05D000001 ORTHO05D004044 1.7e-124 450.3 423 61.7
FAN24G2651 Fragaria x ananassa HOM05D000001 ORTHO05D004044 2.2e-124 449.9 419 61.3
RcHm_v2.0_Chr6g0312051 Rosa chinensis HOM05D000001 ORTHO05D004044 2.8e-124 449.5 425 61.2
Ciclev10007851m.g Citrus clementina HOM05D000001 ORTHO05D004044 6.3e-124 448.4 422 59.7
Haze_18323 Corylus avellana HOM05D000001 ORTHO05D004044 1.1e-123 447.6 446 58.3
Prupe.1G402100 Prunus persica HOM05D000001 ORTHO05D004044 1.5e-122 443.7 421 59.9
FAN15G1549 Fragaria x ananassa HOM05D000001 ORTHO05D004044 2.0e-122 443.4 426 60.3
MD08G1046100 Malus domestica HOM05D000001 ORTHO05D004044 1.3e-121 440.7 423 60.5
Potri.006G218900 Populus trichocarpa HOM05D000001 ORTHO05D004044 5.0e-121 438.7 420 58.8
Potri.018G047700 Populus trichocarpa HOM05D000001 ORTHO05D004044 6.5e-121 438.3 426 58.9
Dinv40932 Davidia involucrata HOM05D000001 ORTHO05D004044 3.9e-118 429.1 425 57.4
Gohir.A05G037900 Gossypium hirsutum HOM05D000001 ORTHO05D004044 7.4e-117 424.9 424 57.5
Gorai.009G039900 Gossypium raimondii HOM05D000001 ORTHO05D004044 7.4e-117 424.9 424 57.5
Gohir.D05G039400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 4.8e-116 422.2 423 57.2
CiPaw.16G067100 Carya illinoinensis HOM05D000001 ORTHO05D004044 1.2e-114 417.5 425 56.2
Lj5g0004443 Lotus japonicus HOM05D000001 ORTHO05D004044 2.6e-114 416.4 421 57.0
TAR624G0865 Trochodendron aralioides HOM05D000001 ORTHO05D004044 1.0e-113 414.5 405 57.3
CSS0022708 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 1.3e-113 414.1 424 56.6
Psat6g024040 Pisum sativum HOM05D000001 ORTHO05D004044 2.2e-113 413.3 414 55.6
Sabra06G0168800 Salix brachista HOM05D000001 ORTHO05D004044 2.9e-113 412.9 423 56.7
TAR667G0003 Trochodendron aralioides HOM05D000001 ORTHO05D004044 8.5e-113 411.4 422 56.2
Glyma.14G106500 Glycine max HOM05D000001 ORTHO05D004044 2.5e-112 409.8 420 54.5
CSS0007474 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 3.2e-112 409.5 425 55.3
GSVIVG01035490001 Vitis vinifera HOM05D000001 ORTHO05D004044 4.2e-112 409.1 419 56.3
Glyma.17G219600 Glycine max HOM05D000001 ORTHO05D004044 5.5e-112 408.7 420 54.5
arahy.Tifrunner.gnm1.ann1.EC7DMA Arachis hypogaea HOM05D000001 ORTHO05D004044 1.6e-111 407.1 420 54.0
Thecc.09G065500 Theobroma cacao HOM05D000001 ORTHO05D004044 2.7e-111 406.4 424 57.3
TPR.G38869 Trifolium pratense HOM05D000001 ORTHO05D004044 3.6e-111 406.0 416 54.1
Solyc08g061320.3 Solanum lycopersicum HOM05D000001 ORTHO05D004044 8.0e-111 404.8 421 54.6
PGSC0003DMG400012991 Solanum tuberosum HOM05D000001 ORTHO05D004044 8.0e-111 404.8 421 54.4
VMungo1309G1461 Vigna mungo HOM05D000001 ORTHO05D004044 1.4e-110 404.1 422 54.3
arahy.Tifrunner.gnm1.ann1.1E00SW Arachis hypogaea HOM05D000001 ORTHO05D004044 5.2e-110 402.1 420 53.6
Phvul.001G044600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 5.2e-110 402.1 422 56.2
Hma1.2p1_0664F.1_g198920 Hydrangea macrophylla HOM05D000001 ORTHO05D004044 1.1e-109 401.0 420 55.0
Duzib168G1373 Durio zibethinus HOM05D000001 ORTHO05D004044 2.0e-109 400.2 424 56.1
Eucgr.C00743 Eucalyptus grandis HOM05D000001 ORTHO05D004044 2.6e-109 399.8 422 53.8
Peaxi162Scf00327g00026 Petunia axillaris HOM05D000001 ORTHO05D004044 9.7e-109 397.9 421 54.2
CiPaw.15G090000 Carya illinoinensis HOM05D000001 ORTHO05D004044 2.2e-108 396.7 421 55.6
Nitab4.5_0004440g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004044 6.3e-108 395.2 421 54.2
Nitab4.5_0009247g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004044 6.3e-108 395.2 421 54.2
Glyma.04G057200 Glycine max HOM05D000001 ORTHO05D004044 1.1e-107 394.4 423 53.9
Sopen08g016700 Solanum pennellii HOM05D000001 ORTHO05D004044 1.1e-107 394.4 421 53.9
CANSAT25G0247 Cannabis sativa HOM05D000001 ORTHO05D004044 1.4e-107 394.0 425 55.1
Ca_13092_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004044 1.8e-107 393.7 414 53.4
TWI34G0443 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 1.8e-107 393.7 427 55.3
TAR626G1342 Trochodendron aralioides HOM05D000001 ORTHO05D004044 1.8e-107 393.7 415 54.5
arahy.Tifrunner.gnm1.ann1.WRM076 Arachis hypogaea HOM05D000001 ORTHO05D004044 3.1e-107 392.9 422 53.6
Lj7C209T10 Lonicera japonica HOM05D000001 ORTHO05D004044 4.1e-107 392.5 420 55.7
Cc08_g00980 Coffea canephora HOM05D000001 ORTHO05D004044 5.3e-107 392.1 423 53.9
Glyma.06G057700 Glycine max HOM05D000001 ORTHO05D004044 1.2e-106 391.0 423 53.4
VMungo0647G0604 Vigna mungo HOM05D000001 ORTHO05D004044 1.2e-106 391.0 421 53.4
arahy.Tifrunner.gnm1.ann1.8BKD36 Arachis hypogaea HOM05D000001 ORTHO05D004044 1.6e-106 390.6 422 53.3
Medtr1g014880 Medicago truncatula HOM05D000001 ORTHO05D004044 1.6e-106 390.6 445 50.6
PGR142G0487 Punica granatum HOM05D000001 ORTHO05D004044 1.6e-106 390.6 423 53.0
Manes.03G056801 Manihot esculenta HOM05D000001 ORTHO05D004044 2.6e-106 389.8 431 55.5
Duzib187G1939 Durio zibethinus HOM05D000001 ORTHO05D004044 1.3e-105 387.5 423 55.3
TWI32G1352 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 1.3e-105 387.5 424 55.0
Phvul.009G083600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 1.7e-105 387.1 422 53.3
CAN.G117.2 Capsicum annuum HOM05D000001 ORTHO05D004044 2.9e-105 386.3 421 52.7
Gohir.A13G188300 Gossypium hirsutum HOM05D000001 ORTHO05D004044 2.9e-105 386.3 421 55.6
Gorai.013G221300 Gossypium raimondii HOM05D000001 ORTHO05D004044 3.8e-105 386.0 421 55.8
Sabra18G0045700 Salix brachista HOM05D000001 ORTHO05D004044 1.9e-104 383.6 432 53.0
Actinidia29292 Actinidia chinensis HOM05D000001 ORTHO05D004044 4.2e-104 382.5 427 52.2
Oeu003966.1 Olea europaea HOM05D000001 ORTHO05D004044 5.5e-104 382.1 421 52.0
Gohir.D13G195200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 7.2e-104 381.7 421 55.6
Lalb_Chr22g0349641 Lupinus albus HOM05D000001 ORTHO05D004044 2.7e-103 379.8 418 52.2
Lalb_Chr11g0063391 Lupinus albus HOM05D000001 ORTHO05D004044 8.0e-103 378.3 421 53.0
MSTRG.25995 Avicennia marina HOM05D000001 ORTHO05D004044 2.0e-101 373.6 421 49.6
Actinidia16899 Actinidia chinensis HOM05D000001 ORTHO05D004044 5.7e-101 372.1 427 50.8
Rhsim11G0001100 Rhododendron simsii HOM05D000001 ORTHO05D004044 7.5e-101 371.7 423 52.2
Aa31LG5G9520 Aethionema arabicum HOM05D000001 ORTHO05D004044 9.7e-101 371.3 422 51.2
SalBow1G0904 Salvia bowleyana HOM05D000001 ORTHO05D004044 2.8e-100 369.8 423 52.0
Carub.0004s0615 Capsella rubella HOM05D000001 ORTHO05D004044 3.7e-100 369.4 401 53.1
THA.LOC104819898 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 3.7e-100 369.4 428 51.6
AUR62037726 Chenopodium quinoa HOM05D000001 ORTHO05D004044 3.1e-99 366.3 420 50.2
DCAR_004372 Daucus carota HOM05D000001 ORTHO05D004044 4.1e-99 365.9 424 51.9
Lj1g0000975 Lotus japonicus HOM05D000001 ORTHO05D004044 4.1e-99 365.9 418 53.1
EL10Ac2g02405 Beta vulgaris HOM05D000001 ORTHO05D004044 7.7e-98 361.7 421 50.4
PSO135G0765 Papaver somniferum HOM05D000001 ORTHO05D004044 1.1e-96 357.8 422 51.9
PSO724G0994 Papaver somniferum HOM05D000001 ORTHO05D004044 2.5e-96 356.7 422 51.4
Dinv41848 Davidia involucrata HOM05D000001 ORTHO05D004044 3.6e-95 352.8 423 51.5
MBI19_g47982_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 4.7e-95 352.4 428 51.4
Aqoxy7G04098 Aquilegia oxysepala HOM05D000001 ORTHO05D004044 6.1e-95 352.1 423 52.0
Sp4g06560 Schrenkiella parvula HOM05D000001 ORTHO05D004044 1.8e-94 350.5 429 50.1
TWI63G1385 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 8.8e-94 348.2 425 51.3
AT2G26280 Arabidopsis thaliana HOM05D000001 ORTHO05D004044 1.2e-93 347.8 419 48.9
ECA240G1094 Erigeron canadensis HOM05D000001 ORTHO05D004044 1.2e-93 347.8 402 49.8
Sc06g0000110 Simmondsia chinensis HOM05D000001 ORTHO05D004044 1.5e-93 347.4 429 49.2
Migut.E01787 Erythranthe guttata HOM05D000001 ORTHO05D004044 4.4e-93 345.9 409 51.3
AUR62020279 Chenopodium quinoa HOM05D000001 ORTHO05D004044 1.7e-92 344.0 424 49.3
ECA236G1474 Erigeron canadensis HOM05D000001 ORTHO05D004044 2.2e-92 343.6 429 50.6
DCAR_003727 Daucus carota HOM05D000001 ORTHO05D004044 5.4e-91 339.0 416 50.2
Lalb_Chr14g0375461 Lupinus albus HOM05D000001 ORTHO05D004044 7.0e-91 338.6 418 48.8
Thhalv10001942m.g Eutrema salsugineum HOM05D000001 ORTHO05D004044 9.1e-91 338.2 433 48.7
MBI19_g09929_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 4.5e-90 335.9 402 50.2
Actinidia29353 Actinidia chinensis HOM05D000001 ORTHO05D004044 2.9e-89 333.2 412 49.5
AL4G18860 Arabidopsis lyrata HOM05D000001 ORTHO05D004044 2.9e-89 333.2 403 48.6
HanXRQChr05g0136451 Helianthus annuus HOM05D000001 ORTHO05D004044 1.9e-88 330.5 407 48.4
Lsat_1_v5_gn_8_70460 Lactuca sativa HOM05D000001 ORTHO05D004044 3.3e-88 329.7 425 48.9
THA.LOC104804451 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 7.2e-88 328.6 422 48.6
Lalb_Chr24g0393701 Lupinus albus HOM05D000001 ORTHO05D004044 2.1e-87 327.0 411 50.9
Actinidia39673 Actinidia chinensis HOM05D000001 ORTHO05D004044 6.1e-87 325.5 410 48.5
Duzib150G1238 Durio zibethinus HOM05D000001 ORTHO05D004044 8.0e-87 325.1 421 49.9
SGA_v2.0_scaffold163G37994 Striga asiatica HOM05D000001 ORTHO05D004044 9.8e-85 318.2 414 48.1
Nn8g38610 Nelumbo nucifera HOM05D000001 ORTHO05D004044 1.4e-83 314.3 394 48.2
SGA_v2.0_scaffold169G38720 Striga asiatica HOM05D000001 ORTHO05D004044 1.4e-83 314.3 418 46.4
HanXRQChr03g0067161 Helianthus annuus HOM05D000001 ORTHO05D004044 2.7e-82 310.1 408 48.0
unitig_32.g10913 Utricularia gibba HOM05D000001 ORTHO05D004044 8.6e-81 305.1 408 46.8
Hund25544 Selenicereus undatus HOM05D000001 ORTHO05D004044 1.6e-79 300.8 476 42.6
unitig_748.g8235 Utricularia gibba HOM05D000001 ORTHO05D004044 4.7e-79 299.3 403 46.9
unitig_4.g30334 Utricularia gibba HOM05D000001 ORTHO05D004044 1.8e-78 297.4 407 46.2
BcaB08g35273 Brassica carinata HOM05D000001 ORTHO05D004044 1.5e-77 294.3 425 45.9
Actinidia01324 Actinidia chinensis HOM05D000001 ORTHO05D004044 4.9e-76 289.3 315 52.1
BraA09t40935Z Brassica rapa HOM05D000001 ORTHO05D004044 4.3e-72 276.2 435 46.0
A09p55320 Brassica napus HOM05D000001 ORTHO05D004044 9.5e-72 275.0 434 45.6
TAR636G0641 Trochodendron aralioides HOM05D000001 ORTHO05D004044 9.5e-72 275.0 310 52.6
vmacro00208 Vaccinium macrocarpon HOM05D000001 ORTHO05D004044 1.1e-70 271.6 664 33.0
BolC8t51400H Brassica oleracea HOM05D000001 ORTHO05D004044 1.4e-70 271.2 437 45.8
Lsat_1_v5_gn_8_149721 Lactuca sativa HOM05D000001 ORTHO05D004044 4.0e-70 269.6 423 43.5
C08p38250 Brassica napus HOM05D000001 ORTHO05D004044 2.0e-69 267.3 435 45.5
BcaC07g40830 Brassica carinata HOM05D000001 ORTHO05D004044 1.7e-68 264.2 437 44.9
CSS0015944 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 4.1e-67 259.6 267 56.2
CDE05G2793 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 1.1e-64 251.5 423 40.2
HPP92_016599 Vanilla planifolia HOM05D000001 ORTHO05D004044 7.3e-64 248.8 419 41.5
SalBow4G2835 Salvia bowleyana HOM05D000001 ORTHO05D004044 9.5e-64 248.4 393 42.2
HanXRQChr09g0248701 Helianthus annuus HOM05D000001 ORTHO05D004044 8.1e-63 245.4 432 41.2
CARHR115120 Cardamine hirsuta HOM05D000001 ORTHO05D004044 6.8e-62 242.3 325 45.5
Psat0s3154g0080 Pisum sativum HOM05D000001 ORTHO05D004044 2.7e-58 230.3 277 46.9
Migut.A00058 Erythranthe guttata HOM05D000001 ORTHO05D004044 1.7e-57 227.6 421 38.5
ATR0598G100 Amborella trichopoda HOM05D000001 ORTHO05D004044 1.1e-56 224.9 426 39.0
Oeu060162.1 Olea europaea HOM05D000001 ORTHO05D004044 2.5e-56 223.8 323 43.3
HPP92_011061 Vanilla planifolia HOM05D000001 ORTHO05D004044 2.5e-56 223.8 419 39.4
Nn6g35692 Nelumbo nucifera HOM05D000001 ORTHO05D004044 3.6e-55 219.9 282 49.3
Gohir.A08G247200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 2.0e-53 214.2 302 46.7
BcaB06g28092 Brassica carinata HOM05D000001 ORTHO05D004044 1.6e-50 204.5 400 39.2
SEGI_25644 Sequoiadendron giganteum HOM05D000001 ORTHO05D004044 2.1e-50 204.1 417 37.4
Gorai.004G286100 Gossypium raimondii HOM05D000001 ORTHO05D004044 4.6e-50 203.0 286 46.2
Os06g0199200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 1.7e-49 201.1 407 38.3
Gohir.D08G268400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 2.3e-49 200.7 286 45.8
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 2.4e-46 190.7 407 37.3
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 9.0e-46 188.7 407 37.1
C04p56020 Brassica napus HOM05D000001 ORTHO05D004044 1.3e-44 184.9 403 36.0
BolC4t27135H Brassica oleracea HOM05D000001 ORTHO05D004044 1.3e-44 184.9 403 36.0
Zm00001eb278590 Zea mays HOM05D000001 ORTHO05D004044 2.9e-44 183.7 431 37.4
BcaC02g08289 Brassica carinata HOM05D000001 ORTHO05D004044 7.1e-43 179.1 407 35.4
Psat0s3154g0240 Pisum sativum HOM05D000001 ORTHO05D004044 1.5e-40 171.4 196 49.0
Psat0s3775g0160 Pisum sativum HOM05D000001 ORTHO05D004044 1.5e-40 171.4 196 49.0
CDE05G0380 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 3.6e-39 166.8 268 41.4
SGA_v2.0_scaffold20G09145 Striga asiatica HOM05D000001 ORTHO05D004044 2.2e-36 157.5 417 33.6
Cpa.g.sc82.5 Carica papaya HOM05D000001 ORTHO05D004044 6.4e-36 156.0 158 55.1
Os02g0780550 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 1.5e-32 144.8 404 34.4
Pp3c4_25250 Physcomitrium patens HOM05D000001 ORTHO05D004044 8.1e-31 139.0 440 31.6
SHI28008 Sapria himalayana HOM05D000001 ORTHO05D004044 7.6e-29 132.5 417 32.4
Pp3c26_4880 Physcomitrium patens HOM05D000001 ORTHO05D004044 4.2e-27 126.7 427 31.1
Os03g0180300 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 3.5e-26 123.6 403 30.8
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 7.4e-24 115.9 131 51.9
Zm00001eb005950 Zea mays HOM05D000001 ORTHO05D004044 1.1e-22 112.1 410 28.5
SMO356G0739 Selaginella moellendorffii HOM05D000001 ORTHO05D004044 6.9e-22 109.4 401 29.2
Zm00001eb373910 Zea mays HOM05D000001 ORTHO05D004044 1.3e-17 95.1 275 30.2
AagrBONN_evm.TU.Sc2ySwM_117.1386 Anthoceros agrestis HOM05D000001 ORTHO05D004044 6.7e-17 92.8 444 25.5
Peaxi162Scf00365g00014 Petunia axillaris HOM05D000001 ORTHO05D004044 8.2e-15 85.9 107 49.5
CBR_g37677 Chara braunii HOM05D000001 ORTHO05D004044 1.1e-14 85.5 506 25.7
CDE05G1886 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 2.0e-08 64.7 101 39.6
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 4.3e-08 63.5 62 53.2
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 6.3e-07 59.7 65 49.2
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.4e-06 58.5 81 40.7
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.9e-06 56.2 93 36.6
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.9e-06 56.2 93 36.6
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.9e-06 56.2 93 36.6
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.9e-06 56.2 93 36.6
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 6.9e-06 56.2 112 34.8
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.1e-06 55.8 95 36.8
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.1e-06 55.8 95 36.8


User provided reference genes

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