Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 1.0e-96 356.7 170 100.0
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 8.9e-53 210.7 106 91.5
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 3.4e-52 208.8 105 89.5
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 3.4e-52 208.8 105 89.5
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 5.7e-52 208.0 105 87.6
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 7.5e-52 207.6 106 88.7
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 3.7e-51 205.3 105 87.6
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 1.1e-50 203.8 106 89.6
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 1.4e-50 203.4 106 88.7
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 1.8e-50 203.0 106 85.8
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 2.4e-50 202.6 96 95.8
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 5.4e-50 201.4 106 87.7
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 7.0e-50 201.1 106 87.7
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 1.2e-49 200.3 106 87.7
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 1.6e-49 199.9 106 86.8
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 2.0e-49 199.5 106 85.8
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 3.5e-49 198.7 106 86.8
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 4.6e-49 198.4 106 85.8
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 5.9e-49 198.0 106 84.9
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 7.8e-49 197.6 172 60.5
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 1.0e-48 197.2 106 84.0
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 1.0e-48 197.2 106 84.0
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 1.7e-48 196.4 107 85.0
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 1.7e-48 196.4 105 85.7
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 1.7e-48 196.4 105 85.7
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.7e-48 196.4 106 83.0
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.7e-48 196.4 106 83.0
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 1.7e-48 196.4 106 84.0
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 2.3e-48 196.1 101 88.1
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 3.0e-48 195.7 105 83.8
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 3.0e-48 195.7 106 84.0
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 3.9e-48 195.3 106 85.8
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 5.0e-48 194.9 106 84.0
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 5.0e-48 194.9 106 84.0
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 8.6e-48 194.1 106 84.9
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 1.1e-47 193.7 133 72.9
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 1.1e-47 193.7 101 86.1
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 1.9e-47 193.0 106 81.1
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 2.5e-47 192.6 95 90.5
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 4.3e-47 191.8 103 86.4
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 9.5e-47 190.7 106 83.0
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 1.2e-46 190.3 101 84.2
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 2.8e-46 189.1 102 86.3
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 3.6e-46 188.7 106 80.2
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 4.7e-46 188.3 136 67.6
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 4.7e-46 188.3 106 81.1
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 4.7e-46 188.3 101 82.2
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 8.0e-46 187.6 96 90.6
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 8.0e-46 187.6 107 80.4
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 1.8e-45 186.4 131 69.5
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 1.8e-45 186.4 102 83.3
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 1.8e-45 186.4 106 81.1
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 2.3e-45 186.0 97 88.7
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 2.3e-45 186.0 106 81.1
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 2.3e-45 186.0 102 84.3
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 3.1e-45 185.7 106 80.2
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.1e-45 185.7 106 80.2
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 4.0e-45 185.3 103 80.6
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 6.8e-45 184.5 106 82.1
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 6.8e-45 184.5 121 70.2
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 6.8e-45 184.5 106 80.2
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 8.9e-45 184.1 106 80.2
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 8.9e-45 184.1 98 85.7
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 8.9e-45 184.1 98 85.7
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 1.2e-44 183.7 106 80.2
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 1.2e-44 183.7 97 85.6
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 1.2e-44 183.7 105 81.0
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 1.5e-44 183.3 106 78.3
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 1.5e-44 183.3 106 79.2
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 1.5e-44 183.3 104 79.8
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 1.5e-44 183.3 106 79.2
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 1.5e-44 183.3 106 80.2
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 2.0e-44 183.0 106 78.3
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 2.0e-44 183.0 101 81.2
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 2.6e-44 182.6 106 78.3
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 2.6e-44 182.6 106 79.2
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 2.6e-44 182.6 106 78.3
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 2.6e-44 182.6 106 78.3
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 2.6e-44 182.6 106 79.2
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 3.4e-44 182.2 106 79.2
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 3.4e-44 182.2 105 81.9
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 5.8e-44 181.4 106 78.3
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 5.8e-44 181.4 106 78.3
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 5.8e-44 181.4 106 78.3
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 5.8e-44 181.4 106 79.2
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 7.5e-44 181.0 95 85.3
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 1.3e-43 180.3 97 82.5
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 1.3e-43 180.3 106 78.3
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 1.7e-43 179.9 103 79.6
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 2.2e-43 179.5 103 77.7
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 2.2e-43 179.5 106 77.4
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 2.2e-43 179.5 104 79.8
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 2.9e-43 179.1 106 76.4
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 3.7e-43 178.7 110 81.8
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 6.4e-43 177.9 102 78.4
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 8.3e-43 177.6 104 78.8
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 8.3e-43 177.6 106 75.5
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 1.4e-42 176.8 106 77.4
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 1.4e-42 176.8 106 77.4
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 1.4e-42 176.8 106 77.4
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 1.4e-42 176.8 102 81.4
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 1.4e-42 176.8 101 81.2
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 1.4e-42 176.8 101 82.2
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 1.9e-42 176.4 104 78.8
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 1.9e-42 176.4 104 78.8
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 1.9e-42 176.4 98 78.6
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 3.2e-42 175.6 106 76.4
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 3.2e-42 175.6 106 76.4
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 3.2e-42 175.6 106 76.4
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 4.1e-42 175.3 106 75.5
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 5.4e-42 174.9 102 80.4
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 7.0e-42 174.5 108 75.9
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 9.2e-42 174.1 96 80.2
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 9.2e-42 174.1 107 82.2
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 9.2e-42 174.1 107 82.2
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 9.2e-42 174.1 107 82.2
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 9.2e-42 174.1 107 82.2
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 9.2e-42 174.1 107 82.2
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 9.2e-42 174.1 105 74.3
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 1.2e-41 173.7 96 79.2
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 2.0e-41 172.9 96 80.2
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 2.0e-41 172.9 102 78.4
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 2.7e-41 172.6 100 78.0
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 1.3e-40 170.2 97 79.4
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 1.7e-40 169.9 108 73.1
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 2.3e-40 169.5 100 77.0
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 6.6e-40 167.9 98 76.5
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 8.6e-40 167.5 128 68.0
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 8.6e-40 167.5 98 76.5
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 7.3e-39 164.5 95 76.8
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 9.5e-39 164.1 101 72.3
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 1.2e-38 163.7 101 72.3
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 5.2e-37 158.3 88 77.3
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 3.4e-36 155.6 77 88.3
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.2e-33 147.1 95 70.5
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 7.8e-33 144.4 84 78.6
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 5.6e-31 138.3 68 88.2
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 2.2e-27 126.3 75 78.7
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 4.9e-27 125.2 75 76.0
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 2.7e-25 119.4 71 73.2
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 1.0e-24 117.5 68 77.9
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 1.3e-24 117.1 67 77.6
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.7e-24 116.7 85 62.4
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 1.7e-24 116.7 86 62.8
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 3.0e-24 115.9 85 62.4
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 3.9e-24 115.5 83 63.9
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 2.8e-22 109.4 84 56.0
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.1e-21 107.5 89 56.2
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 1.2e-20 104.0 103 55.3
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 2.2e-19 99.8 59 71.2
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 5.1e-16 88.6 76 59.2
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 3.3e-15 85.9 90 44.4
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 1.2e-12 77.4 50 72.0
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 5.8e-12 75.1 54 68.5
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 7.1e-10 68.2 95 37.9
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 4.6e-09 65.5 36 80.6
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 2.3e-08 63.2 48 58.3
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 6.7e-08 61.6 36 77.8


User provided reference genes

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