Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004761 Sechium edule HOM05D000040 ORTHO05D373526 1.1e-84 316.6 160 100.0
Sed0008375 Sechium edule HOM05D000040 ORTHO05D000267 4.8e-24 115.2 257 35.8
Sed0004196 Sechium edule HOM05D000040 ORTHO05D000267 1.4e-23 113.6 257 37.0
ClCG06G000660 Citrullus lanatus HOM05D000040 ORTHO05D000267 6.9e-23 111.3 245 34.7
CsaV3_6G006450 Cucumis sativus L. HOM05D000040 ORTHO05D000267 1.7e-21 106.7 262 33.6
CsaV3_6G006430 Cucumis sativus L. HOM05D000040 ORTHO05D000267 1.9e-20 103.2 186 39.2
MELO3C022475.2 Cucumis melo HOM05D000040 ORTHO05D000267 2.7e-19 99.4 262 33.2
MELO3C022476.2 Cucumis melo HOM05D000040 ORTHO05D000267 6.9e-15 84.7 257 29.6
Lalb_Chr01g0007871 Lupinus albus HOM05D000040 ORTHO05D000267 6.5e-13 78.2 185 30.8
Glyma.08G149900 Glycine max HOM05D000040 ORTHO05D000267 1.4e-12 77.0 219 30.6
Lalb_Chr01g0007911 Lupinus albus HOM05D000040 ORTHO05D000267 3.5e-11 72.4 163 30.7
VMungo1080G1038 Vigna mungo HOM05D000040 ORTHO05D000267 1.3e-10 70.5 190 30.0
Phvul.005G063600 Phaseolus vulgaris HOM05D000040 ORTHO05D000267 1.8e-10 70.1 186 28.5
Lalb_Chr01g0007891 Lupinus albus HOM05D000040 ORTHO05D000267 2.3e-10 69.7 209 29.2
VMungo1127G0717 Vigna mungo HOM05D000040 ORTHO05D000267 3.9e-10 68.9 192 27.6
Glyma.13G199100 Glycine max HOM05D000040 ORTHO05D000267 6.7e-10 68.2 233 27.0
VMungo1127G1773 Vigna mungo HOM05D000040 ORTHO05D000267 6.7e-10 68.2 181 28.7
Lalb_Chr01g0007841 Lupinus albus HOM05D000040 ORTHO05D000267 8.7e-10 67.8 186 29.6
Lj4g0008096 Lotus japonicus HOM05D000040 ORTHO05D000267 2.5e-09 66.2 234 28.6
Dinv43527 Davidia involucrata HOM05D000040 ORTHO05D000267 3.3e-09 65.9 175 29.7
Lalb_Chr01g0007861 Lupinus albus HOM05D000040 ORTHO05D000267 3.3e-09 65.9 163 30.1
THA.LOC104805732 Tarenaya hassleriana HOM05D000040 ORTHO05D000267 3.3e-09 65.9 185 31.9
Migut.B01432 Erythranthe guttata HOM05D000040 ORTHO05D000267 4.3e-09 65.5 131 33.6
Phvul.011G209900 Phaseolus vulgaris HOM05D000040 ORTHO05D000267 9.7e-09 64.3 184 27.7
Ciclev10031641m.g Citrus clementina HOM05D000040 ORTHO05D000267 1.3e-08 63.9 193 29.0
Prupe.2G103100 Prunus persica HOM05D000040 ORTHO05D000267 1.3e-08 63.9 209 28.7
Glyma.13G199400 Glycine max HOM05D000040 ORTHO05D000267 1.6e-08 63.5 188 28.2
Lj3g0020461 Lotus japonicus HOM05D000040 ORTHO05D000267 1.6e-08 63.5 208 28.8
Glyma.12G235400 Glycine max HOM05D000040 ORTHO05D000267 2.2e-08 63.2 189 27.0
TPR.G29210 Trifolium pratense HOM05D000040 ORTHO05D000267 2.2e-08 63.2 157 28.7
CSS0008343 Camellia sinensis var. sinensis HOM05D000040 ORTHO05D000267 2.8e-08 62.8 189 27.5
CSS0028369 Camellia sinensis var. sinensis HOM05D000040 ORTHO05D000267 2.8e-08 62.8 187 27.3
Cpa.g.sc73.73 Carica papaya HOM05D000040 ORTHO05D000267 2.8e-08 62.8 223 29.6
Lalb_Chr01g0007851 Lupinus albus HOM05D000040 ORTHO05D000267 2.8e-08 62.8 163 29.4
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 3.7e-08 62.4 160 28.1
CSS0004002 Camellia sinensis var. sinensis HOM05D000040 ORTHO05D000267 3.7e-08 62.4 187 26.7
PGR042G1256 Punica granatum HOM05D000040 ORTHO05D000267 3.7e-08 62.4 176 30.1
FAN05G4612 Fragaria x ananassa HOM05D000040 ORTHO05D000267 4.8e-08 62.0 160 30.6
FAN09G1731 Fragaria x ananassa HOM05D000040 ORTHO05D000267 4.8e-08 62.0 160 30.6
TPR.G8474 Trifolium pratense HOM05D000040 ORTHO05D000267 6.3e-08 61.6 198 27.3
FvH4_6g24220 Fragaria vesca HOM05D000040 ORTHO05D000267 8.2e-08 61.2 154 28.6
Gohir.A04G109464 Gossypium hirsutum HOM05D000040 ORTHO05D000759 8.2e-08 61.2 65 41.5
Gohir.D04G149400 Gossypium hirsutum HOM05D000040 ORTHO05D000759 8.2e-08 61.2 65 41.5
Gorai.012G135900 Gossypium raimondii HOM05D000040 ORTHO05D000759 8.2e-08 61.2 65 41.5
Lj4g0013542 Lotus japonicus HOM05D000040 ORTHO05D000267 8.2e-08 61.2 188 29.3
Phvul.011G208700 Phaseolus vulgaris HOM05D000040 ORTHO05D000267 1.1e-07 60.8 159 26.4
RcHm_v2.0_Chr1g0342861 Rosa chinensis HOM05D000040 ORTHO05D000267 1.1e-07 60.8 249 28.5
SalBow8G1597 Salvia bowleyana HOM05D000040 ORTHO05D000267 1.1e-07 60.8 135 33.3
SalBow8G5334 Salvia bowleyana HOM05D000040 ORTHO05D000267 1.1e-07 60.8 135 33.3
Ciclev10020249m.g Citrus clementina HOM05D000040 ORTHO05D000267 1.4e-07 60.5 195 31.3
Ciclev10020250m.g Citrus clementina HOM05D000040 ORTHO05D000267 1.4e-07 60.5 195 31.3
Lalb_Chr01g0020501 Lupinus albus HOM05D000040 ORTHO05D000267 1.4e-07 60.5 183 26.8
Medtr5g080890 Medicago truncatula HOM05D000040 ORTHO05D000267 1.4e-07 60.5 191 29.3
Phvul.002G037300 Phaseolus vulgaris HOM05D000040 ORTHO05D000267 1.4e-07 60.5 156 30.1
QL04p033484 Quercus lobata HOM05D000040 ORTHO05D000267 1.4e-07 60.5 194 29.9
QL04p053075 Quercus lobata HOM05D000040 ORTHO05D000267 1.4e-07 60.5 191 28.8
QL09p026270 Quercus lobata HOM05D000040 ORTHO05D000267 2.4e-07 59.7 184 30.4
Lj1g0016533 Lotus japonicus HOM05D000040 ORTHO05D000267 3.1e-07 59.3 191 29.3
PGR102G2391 Punica granatum HOM05D000040 ORTHO05D000267 3.1e-07 59.3 171 28.7
FAN10G3201 Fragaria x ananassa HOM05D000040 ORTHO05D000267 4.1e-07 58.9 166 28.9
QL04p052791 Quercus lobata HOM05D000040 ORTHO05D000267 4.1e-07 58.9 264 26.1
QL09p031607 Quercus lobata HOM05D000040 ORTHO05D000267 4.1e-07 58.9 264 26.1
VMungo1215G0603 Vigna mungo HOM05D000040 ORTHO05D000267 4.1e-07 58.9 156 29.5
Ciclev10031639m.g Citrus clementina HOM05D000040 ORTHO05D000267 5.3e-07 58.5 193 28.5
Cc05_g05450 Coffea canephora HOM05D000040 ORTHO05D000267 5.3e-07 58.5 217 25.3
Psat3g110640 Pisum sativum HOM05D000040 ORTHO05D000267 5.3e-07 58.5 157 27.4
Aa31LG9G18000 Aethionema arabicum HOM05D000040 ORTHO05D000267 6.9e-07 58.2 266 26.7
CDE07G1723 Ceratophyllum demersum HOM05D000040 ORTHO05D000267 6.9e-07 58.2 170 26.5
FvH4_7g07650 Fragaria vesca HOM05D000040 ORTHO05D000267 6.9e-07 58.2 166 28.9
Lalb_Chr06g0164031 Lupinus albus HOM05D000040 ORTHO05D000759 6.9e-07 58.2 64 40.6
Psat3g110720 Pisum sativum HOM05D000040 ORTHO05D000267 9.0e-07 57.8 186 26.3
VMungo1127G0174 Vigna mungo HOM05D000040 ORTHO05D000267 9.0e-07 57.8 177 28.8
Actinidia04361 Actinidia chinensis HOM05D000040 ORTHO05D000759 1.2e-06 57.4 65 40.0
Duzib248G0213 Durio zibethinus HOM05D000040 ORTHO05D000759 1.2e-06 57.4 64 42.2
FAN14G1845 Fragaria x ananassa HOM05D000040 ORTHO05D000267 1.2e-06 57.4 154 29.2
Lj6C706G12 Lonicera japonica HOM05D000040 ORTHO05D000759 1.2e-06 57.4 64 42.2
MD13G1002100 Malus domestica HOM05D000040 ORTHO05D000759 1.2e-06 57.4 68 39.7
Medtr5g080960 Medicago truncatula HOM05D000040 ORTHO05D000267 1.2e-06 57.4 191 28.8
Phvul.011G208000 Phaseolus vulgaris HOM05D000040 ORTHO05D000267 1.2e-06 57.4 182 26.9
Phvul.011G208900 Phaseolus vulgaris HOM05D000040 ORTHO05D000267 1.2e-06 57.4 252 25.4
Psat0s4346g0040 Pisum sativum HOM05D000040 ORTHO05D000267 1.2e-06 57.4 157 27.4
PGR119G2383 Punica granatum HOM05D000040 ORTHO05D000267 1.2e-06 57.4 171 28.7
Thecc.02G153500 Theobroma cacao HOM05D000040 ORTHO05D000759 1.2e-06 57.4 64 40.6
FvH4_4g37260 Fragaria vesca HOM05D000040 ORTHO05D000759 1.5e-06 57.0 131 29.0
Glyma.13G200600 Glycine max HOM05D000040 ORTHO05D000267 1.5e-06 57.0 155 27.7
Gohir.D12G136300 Gossypium hirsutum HOM05D000040 ORTHO05D000759 1.5e-06 57.0 64 42.2
Gorai.008G147500 Gossypium raimondii HOM05D000040 ORTHO05D000759 1.5e-06 57.0 64 42.2
Lalb_Chr01g0007831 Lupinus albus HOM05D000040 ORTHO05D000267 1.5e-06 57.0 220 28.2
Lalb_Chr10g0097661 Lupinus albus HOM05D000040 ORTHO05D000267 1.5e-06 57.0 190 28.4
QL04p053029 Quercus lobata HOM05D000040 ORTHO05D000267 1.5e-06 57.0 190 27.9
TPR.G34144 Trifolium pratense HOM05D000040 ORTHO05D000267 1.5e-06 57.0 182 27.5
TPR.G37924 Trifolium pratense HOM05D000040 ORTHO05D000267 1.5e-06 57.0 175 31.4
CAN.G419.6 Capsicum annuum HOM05D000040 ORTHO05D000759 2.0e-06 56.6 64 35.9
Lj3g0011544 Lotus japonicus HOM05D000040 ORTHO05D000267 2.0e-06 56.6 191 27.7
Lj3g0023427 Lotus japonicus HOM05D000040 ORTHO05D000267 2.0e-06 56.6 185 25.9
Lalb_Chr20g0108561 Lupinus albus HOM05D000040 ORTHO05D000267 2.0e-06 56.6 178 27.0
Medtr5g008070 Medicago truncatula HOM05D000040 ORTHO05D000267 2.0e-06 56.6 173 29.5
Medtr5g038360 Medicago truncatula HOM05D000040 ORTHO05D000267 2.0e-06 56.6 172 27.9
Medtr5g044570 Medicago truncatula HOM05D000040 ORTHO05D000267 2.0e-06 56.6 225 27.1
RcHm_v2.0_Chr4g0447081 Rosa chinensis HOM05D000040 ORTHO05D000759 2.0e-06 56.6 132 30.3
arahy.Tifrunner.gnm1.ann1.51XXGA Arachis hypogaea HOM05D000040 ORTHO05D000267 2.6e-06 56.2 174 25.9
CSS0002527 Camellia sinensis var. sinensis HOM05D000040 ORTHO05D000267 2.6e-06 56.2 175 25.7
CANSAT78G1654 Cannabis sativa HOM05D000040 ORTHO05D000759 2.6e-06 56.2 64 40.6
FAN07G1108 Fragaria x ananassa HOM05D000040 ORTHO05D000759 2.6e-06 56.2 131 28.2
PSO210G0625 Papaver somniferum HOM05D000040 ORTHO05D000267 2.6e-06 56.2 229 26.6
PGSC0003DMG400002196 Solanum tuberosum HOM05D000040 ORTHO05D000759 2.6e-06 56.2 65 38.5
TPR.G38024 Trifolium pratense HOM05D000040 ORTHO05D000267 2.6e-06 56.2 143 32.2
VMungo1127G0890 Vigna mungo HOM05D000040 ORTHO05D000267 2.6e-06 56.2 193 26.9
Zm00001eb281170 Zea mays HOM05D000040 ORTHO05D001305 2.6e-06 56.2 76 42.1
AUR62009392 Chenopodium quinoa HOM05D000040 ORTHO05D000267 3.4e-06 55.8 160 26.9
COL.COLO4_33127 Corchorus olitorius HOM05D000040 ORTHO05D000759 3.4e-06 55.8 64 39.1
FAN10G1010 Fragaria x ananassa HOM05D000040 ORTHO05D000267 3.4e-06 55.8 196 29.1
FAN17G2399 Fragaria x ananassa HOM05D000040 ORTHO05D000759 3.4e-06 55.8 131 28.2
Glyma.13G200500 Glycine max HOM05D000040 ORTHO05D000267 3.4e-06 55.8 194 26.3
Glyma.15G237500 Glycine max HOM05D000040 ORTHO05D000267 3.4e-06 55.8 163 27.6
Lj1g0007306 Lotus japonicus HOM05D000040 ORTHO05D000267 3.4e-06 55.8 176 27.8
Lj3g0005023 Lotus japonicus HOM05D000040 ORTHO05D000267 3.4e-06 55.8 188 28.2
PSO478G1217 Papaver somniferum HOM05D000040 ORTHO05D000267 3.4e-06 55.8 268 26.1
BcaB04g18082 Brassica carinata HOM05D000040 ORTHO05D000267 4.5e-06 55.5 192 28.1
CARHR055390 Cardamine hirsuta HOM05D000040 ORTHO05D000267 4.5e-06 55.5 192 26.0
Eucgr.E01758 Eucalyptus grandis HOM05D000040 ORTHO05D000267 4.5e-06 55.5 167 23.4
FvH4_7g07620 Fragaria vesca HOM05D000040 ORTHO05D000267 4.5e-06 55.5 197 29.9
FAN06G0637 Fragaria x ananassa HOM05D000040 ORTHO05D000267 4.5e-06 55.5 197 29.9
Lalb_Chr18g0045161 Lupinus albus HOM05D000040 ORTHO05D000267 4.5e-06 55.5 215 26.0
Phvul.011G208100 Phaseolus vulgaris HOM05D000040 ORTHO05D000267 4.5e-06 55.5 213 25.4
Solyc02g005601.1 Solanum lycopersicum HOM05D000040 ORTHO05D000759 4.5e-06 55.5 65 36.9
Sopen02g002250 Solanum pennellii HOM05D000040 ORTHO05D000759 4.5e-06 55.5 65 36.9
TPR.G27788 Trifolium pratense HOM05D000040 ORTHO05D000267 4.5e-06 55.5 138 31.2
Zm00001eb381270 Zea mays HOM05D000040 ORTHO05D001305 4.5e-06 55.5 76 40.8
AL7G43740 Arabidopsis lyrata HOM05D000040 ORTHO05D000267 5.9e-06 55.1 195 26.7
BraA08t33003Z Brassica rapa HOM05D000040 ORTHO05D000267 5.9e-06 55.1 192 27.6
Ca_12053_v3 Cicer arietinum L. HOM05D000040 ORTHO05D000267 5.9e-06 55.1 167 25.7
Ca_20177_v3 Cicer arietinum L. HOM05D000040 ORTHO05D000267 5.9e-06 55.1 157 27.4
Manes.11G000700 Manihot esculenta HOM05D000040 ORTHO05D000759 5.9e-06 55.1 64 39.1
Medtr8g096990 Medicago truncatula HOM05D000040 ORTHO05D000267 5.9e-06 55.1 181 28.2
Peaxi162Scf00900g00110 Petunia axillaris HOM05D000040 ORTHO05D000759 5.9e-06 55.1 64 37.5
Phvul.011G209000 Phaseolus vulgaris HOM05D000040 ORTHO05D000267 5.9e-06 55.1 212 26.9
Sp7g07600 Schrenkiella parvula HOM05D000040 ORTHO05D000267 5.9e-06 55.1 209 26.3
Nitab4.5_0006537g0020 Nicotiana tabacum HOM05D000040 ORTHO05D000759 7.7e-06 54.7 64 37.5
Thecc.05G233400 Theobroma cacao HOM05D000040 ORTHO05D000267 7.7e-06 54.7 158 27.2
TPR.G34121 Trifolium pratense HOM05D000040 ORTHO05D000267 7.7e-06 54.7 155 27.1
TWI60G0430 Tripterygium wilfordii HOM05D000040 ORTHO05D000267 7.7e-06 54.7 196 26.5
VMungo0251G3648 Vigna mungo HOM05D000030 ORTHO05D000009 7.7e-06 54.7 179 27.9
VMungo1127G2049 Vigna mungo HOM05D000040 ORTHO05D000267 7.7e-06 54.7 159 26.4
Zm00001eb316350 Zea mays HOM05D000040 ORTHO05D001305 7.7e-06 54.7 64 40.6
AT1G64830 Arabidopsis thaliana HOM05D000040 ORTHO05D000267 1.0e-05 54.3 192 29.2
MSTRG.17952 Avicennia marina HOM05D000040 ORTHO05D000759 1.0e-05 54.3 64 39.1
Ciclev10031332m.g Citrus clementina HOM05D000040 ORTHO05D000759 1.0e-05 54.3 64 39.1
MD00G1127200 Malus domestica HOM05D000040 ORTHO05D000759 1.0e-05 54.3 67 38.8
Nitab4.5_0000139g0010 Nicotiana tabacum HOM05D000040 ORTHO05D000759 1.0e-05 54.3 65 36.9


User provided reference genes

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