Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 1.8e-90 335.9 163 100.0
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 1.7e-77 292.7 157 87.3
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 5.5e-76 287.7 156 86.5
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 7.1e-76 287.3 157 86.0
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 4.5e-70 268.1 152 82.2
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 7.7e-70 267.3 151 83.4
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 1.4e-68 263.1 155 79.4
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 1.9e-68 262.7 156 76.9
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 5.5e-68 261.2 156 76.3
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 7.2e-68 260.8 155 80.0
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 2.1e-67 259.2 155 78.1
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 2.1e-67 259.2 154 78.6
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 2.7e-67 258.8 151 78.1
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 4.6e-67 258.1 156 76.3
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 6.1e-67 257.7 152 78.9
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 5.1e-66 254.6 158 74.1
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 5.1e-66 254.6 155 76.8
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 8.8e-66 253.8 151 78.8
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 8.8e-66 253.8 152 75.7
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 2.5e-65 252.3 152 75.0
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 2.5e-65 252.3 151 78.1
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 3.3e-65 251.9 152 75.0
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 5.7e-65 251.1 150 79.3
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 7.4e-65 250.8 152 76.3
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 7.4e-65 250.8 155 73.5
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 1.3e-64 250.0 152 73.7
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 1.3e-64 250.0 154 74.7
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 1.3e-64 250.0 154 74.7
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 1.7e-64 249.6 152 73.7
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 3.7e-64 248.4 154 75.3
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 3.7e-64 248.4 154 75.3
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 3.7e-64 248.4 153 75.2
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 4.8e-64 248.1 151 74.8
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 4.8e-64 248.1 159 69.2
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 8.2e-64 247.3 158 71.5
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 8.2e-64 247.3 150 77.3
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 8.2e-64 247.3 155 71.6
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 1.1e-63 246.9 158 71.5
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 1.4e-63 246.5 155 73.5
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 1.8e-63 246.1 150 76.7
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 2.4e-63 245.7 152 73.0
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 2.4e-63 245.7 159 69.2
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 3.1e-63 245.4 152 74.3
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 5.3e-63 244.6 156 73.1
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 1.5e-62 243.0 153 71.2
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 2.6e-62 242.3 152 74.3
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 2.6e-62 242.3 151 72.8
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 4.5e-62 241.5 156 70.5
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 5.9e-62 241.1 152 71.1
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 7.7e-62 240.7 157 68.2
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 1.0e-61 240.4 154 70.8
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 1.3e-61 240.0 151 72.2
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 2.9e-61 238.8 155 72.9
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 6.5e-61 237.7 156 72.4
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 6.5e-61 237.7 155 72.3
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 1.4e-60 236.5 157 70.1
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 1.4e-60 236.5 151 72.2
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 1.9e-60 236.1 155 71.6
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 2.5e-60 235.7 156 71.8
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 4.2e-60 235.0 151 72.8
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 7.2e-60 234.2 154 71.4
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 7.2e-60 234.2 154 71.4
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 7.2e-60 234.2 154 74.0
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 7.2e-60 234.2 196 60.7
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 9.4e-60 233.8 155 71.0
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 1.2e-59 233.4 155 71.0
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 4.7e-59 231.5 154 70.8
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 6.1e-59 231.1 153 69.3
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 6.1e-59 231.1 156 69.9
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 1.0e-58 230.3 152 70.4
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 1.0e-58 230.3 151 67.5
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 7.4e-57 224.2 149 69.1
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 1.3e-56 223.4 134 75.4
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 1.7e-56 223.0 152 67.1
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 1.7e-56 223.0 149 68.5
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 2.2e-56 222.6 134 75.4
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 2.2e-56 222.6 149 69.8
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 3.7e-56 221.9 154 62.3
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 3.7e-56 221.9 156 62.8
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 6.3e-56 221.1 153 67.3
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 1.1e-55 220.3 152 65.8
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 1.1e-55 220.3 159 61.0
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 7.0e-55 217.6 158 65.8
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 7.0e-55 217.6 164 65.9
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 1.2e-54 216.9 138 71.7
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 2.2e-53 212.6 152 65.8
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 3.9e-50 201.8 160 65.0
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 8.8e-50 200.7 153 60.8
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 1.3e-48 196.8 120 76.7
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 4.8e-48 194.9 149 63.8
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 1.2e-46 190.3 118 75.4
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 2.6e-46 189.1 127 67.7
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 5.9e-46 188.0 119 70.6
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 1.3e-45 186.8 132 65.9
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 1.7e-45 186.4 149 56.4
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 1.2e-43 180.3 170 54.1
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 8.0e-43 177.6 157 52.9
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 2.0e-41 172.9 154 58.4
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 3.4e-41 172.2 155 57.4
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 3.2e-36 155.6 155 53.5
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 2.3e-34 149.4 85 78.8
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 5.7e-33 144.8 107 60.7
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 5.9e-30 134.8 92 66.3
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 4.2e-28 128.6 87 72.4
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 5.5e-28 128.3 121 54.5
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 2.6e-25 119.4 74 73.0
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 5.4e-23 111.7 58 87.9
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 4.7e-11 72.0 33 93.9
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 1.8e-10 70.1 50 58.0
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 5.8e-09 65.1 39 71.8
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 7.5e-09 64.7 36 80.6
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 1.7e-08 63.5 53 58.5
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 3.7e-08 62.4 32 78.1
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 9.2e-07 57.8 43 60.5


User provided reference genes

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