Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 3.1e-104 381.7 183 100.0
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 3.1e-67 258.8 149 80.5
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 4.4e-66 255.0 148 79.7
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 7.8e-63 244.2 182 66.5
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 2.0e-58 229.6 139 73.4
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 1.7e-57 226.5 148 70.3
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 2.2e-57 226.1 145 72.4
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 2.9e-57 225.7 149 69.8
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.1e-56 223.8 141 70.9
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 2.4e-56 222.6 147 68.7
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 4.1e-56 221.9 140 72.1
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.4e-56 221.5 148 68.9
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 7.1e-56 221.1 140 72.1
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 2.7e-55 219.2 137 71.5
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 6.0e-55 218.0 146 70.5
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 7.8e-55 217.6 139 70.5
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 7.8e-55 217.6 149 67.1
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 7.8e-55 217.6 141 71.6
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 1.0e-54 217.2 146 69.9
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 1.3e-54 216.9 140 72.1
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 3.0e-54 215.7 143 69.9
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 3.0e-54 215.7 144 71.5
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 3.9e-54 215.3 155 65.8
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 5.1e-54 214.9 139 69.1
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 6.6e-54 214.5 141 72.3
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 6.6e-54 214.5 137 71.5
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 6.6e-54 214.5 141 73.0
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 8.6e-54 214.2 155 65.8
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 1.1e-53 213.8 135 72.6
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 2.5e-53 212.6 139 69.1
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 5.6e-53 211.5 140 69.3
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 5.6e-53 211.5 144 66.0
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.6e-53 211.5 144 66.0
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 7.3e-53 211.1 140 68.6
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 9.5e-53 210.7 140 69.3
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-52 210.3 144 65.3
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 1.6e-52 209.9 139 67.6
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 2.1e-52 209.5 140 68.6
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.1e-52 209.5 158 61.4
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 3.6e-52 208.8 143 67.8
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 4.7e-52 208.4 156 64.7
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 4.7e-52 208.4 140 68.6
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 4.7e-52 208.4 145 68.3
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 6.2e-52 208.0 156 64.7
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 6.2e-52 208.0 152 64.5
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 8.1e-52 207.6 140 68.6
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 8.1e-52 207.6 141 66.7
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 8.1e-52 207.6 141 66.7
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 1.1e-51 207.2 136 69.1
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 1.1e-51 207.2 143 65.0
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.8e-51 206.5 136 68.4
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 1.5e-50 203.4 143 65.7
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 2.0e-50 203.0 139 66.2
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 2.0e-50 203.0 152 65.1
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 2.6e-50 202.6 149 65.1
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 4.4e-50 201.8 151 63.6
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 4.4e-50 201.8 151 63.6
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 4.4e-50 201.8 151 63.6
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 7.6e-50 201.1 138 63.8
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 9.9e-50 200.7 142 64.8
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.9e-50 200.7 142 64.8
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.3e-49 200.3 143 65.0
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.3e-49 200.3 151 62.3
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.9e-49 199.1 138 65.2
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 2.9e-49 199.1 151 62.3
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 4.9e-49 198.4 141 68.8
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 4.9e-49 198.4 139 66.2
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 6.4e-49 198.0 158 58.9
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 6.4e-49 198.0 146 61.6
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 8.4e-49 197.6 139 64.7
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-48 197.2 144 66.0
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 1.1e-48 197.2 139 64.7
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 1.4e-48 196.8 137 63.5
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.9e-48 196.4 146 63.0
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.9e-48 196.4 139 64.7
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 1.9e-48 196.4 139 64.7
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 1.9e-48 196.4 143 67.1
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.4e-48 196.1 150 62.7
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 2.4e-48 196.1 140 67.1
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 3.2e-48 195.7 139 65.5
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 3.2e-48 195.7 148 61.5
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.2e-48 195.7 148 61.5
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 4.1e-48 195.3 149 63.8
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 4.1e-48 195.3 147 63.9
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 1.2e-47 193.7 143 62.9
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.2e-47 193.7 150 64.7
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.6e-47 193.4 152 63.2
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.6e-47 193.4 152 63.2
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 1.6e-47 193.4 138 63.0
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.6e-47 193.4 140 63.6
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 2.7e-47 192.6 139 65.5
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 3.5e-47 192.2 150 62.0
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 3.5e-47 192.2 140 63.6
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 6.0e-47 191.4 141 64.5
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 7.8e-47 191.0 150 63.3
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.7e-46 189.9 137 59.9
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.7e-46 189.9 145 60.7
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.3e-46 189.5 140 65.0
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.3e-46 189.5 140 65.0
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 3.0e-46 189.1 139 59.7
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.9e-46 188.7 145 60.7
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 3.9e-46 188.7 139 61.9
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.6e-46 188.0 145 61.4
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.1e-45 187.2 138 63.0
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-45 187.2 145 61.4
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 1.5e-45 186.8 134 65.7
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.9e-45 186.4 148 59.5
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 1.9e-45 186.4 139 62.6
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 2.5e-45 186.0 139 61.2
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 5.6e-45 184.9 130 66.2
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 9.6e-45 184.1 145 60.7
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 2.1e-44 183.0 143 63.6
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 2.8e-44 182.6 147 61.2
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.1e-43 180.6 139 56.8
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.1e-43 180.6 139 56.8
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.1e-43 180.6 138 59.4
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.4e-43 180.3 148 60.1
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 1.8e-43 179.9 137 63.5
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 4.0e-43 178.7 145 60.0
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 6.9e-43 177.9 132 63.6
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.5e-42 176.8 137 62.0
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 1.5e-42 176.8 145 58.6
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.0e-42 176.4 177 52.0
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 2.6e-42 176.0 140 63.6
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.7e-41 173.3 141 56.0
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 1.7e-41 173.3 139 61.9
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.9e-41 172.6 138 58.7
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.9e-41 171.8 138 60.1
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 1.1e-40 170.6 144 56.2
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 2.4e-40 169.5 139 59.0
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 3.2e-40 169.1 139 57.6
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 1.2e-39 167.2 150 57.3
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 2.7e-39 166.0 135 56.3
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 3.5e-39 165.6 98 70.4
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 4.6e-39 165.2 138 60.1
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.8e-39 164.5 217 42.9
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 3.9e-38 162.2 137 60.6
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 6.6e-38 161.4 150 56.0
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 8.7e-38 161.0 159 50.3
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.9e-37 159.8 152 52.6
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 1.3e-36 157.1 118 66.9
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 8.1e-36 154.5 141 54.6
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 4.0e-35 152.1 138 47.8
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 2.6e-34 149.4 139 53.2
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 1.3e-33 147.1 116 61.2
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.1e-32 144.1 98 62.2
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.9e-32 143.3 146 52.1
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 5.4e-32 141.7 176 42.0
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 9.3e-32 141.0 142 47.9
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 2.7e-31 139.4 145 50.3
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 1.3e-30 137.1 136 48.5
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 4.8e-28 128.6 137 47.4
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 4.2e-24 115.5 134 44.8
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 1.9e-21 106.7 134 45.5
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 7.4e-21 104.8 133 42.9
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 9.6e-21 104.4 105 52.4
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 1.6e-20 103.6 75 66.7
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 5.3e-19 98.6 71 57.7
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.5e-18 97.1 119 43.7
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 2.9e-17 92.8 53 66.0
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.5e-16 89.7 71 66.2
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 2.1e-15 86.7 103 45.6
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 3.5e-15 85.9 78 61.5
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 3.5e-15 85.9 66 65.2
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 6.0e-15 85.1 50 66.0
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 2.2e-12 76.6 73 54.8
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 9.0e-11 71.2 61 60.7
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 3.8e-09 65.9 40 60.0
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 1.9e-08 63.5 71 50.7
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 2.3e-06 56.6 44 68.2


User provided reference genes

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