Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 5.9e-299 1030.0 495 100.0
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 5.4e-135 485.3 828 42.9
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 3.9e-133 479.2 829 41.6
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 2.1e-131 473.4 829 41.0
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 1.8e-130 470.3 866 40.0
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 2.6e-113 413.3 778 38.9
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 2.5e-108 396.7 799 36.0
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 1.6e-107 394.0 828 35.5
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 8.2e-107 391.7 831 35.1
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 8.2e-107 391.7 831 36.3
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 1.1e-106 391.3 830 34.8
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 2.0e-105 387.1 833 35.4
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 3.4e-105 386.3 838 35.1
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 3.8e-104 382.9 766 36.7
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 3.8e-104 382.9 836 35.2
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 6.5e-104 382.1 836 34.9
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 6.5e-104 382.1 836 34.9
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 6.5e-104 382.1 737 37.6
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 8.5e-104 381.7 833 35.5
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.9e-103 380.6 836 34.8
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 1.9e-103 380.6 825 35.3
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 3.2e-103 379.8 824 34.5
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 7.2e-103 378.6 739 37.2
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 9.3e-103 378.3 820 35.6
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 9.3e-103 378.3 824 35.8
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.2e-102 377.9 824 35.9
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 1.2e-102 377.9 750 38.1
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 1.6e-102 377.5 811 34.9
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.6e-102 377.5 842 34.9
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 1.6e-102 377.5 842 34.9
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 4.6e-102 375.9 832 34.7
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 4.6e-102 375.9 826 35.4
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 6.1e-102 375.6 748 37.0
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 6.1e-102 375.6 821 34.6
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 3.9e-101 372.9 821 34.3
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 3.9e-101 372.9 890 34.3
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 6.7e-101 372.1 744 37.2
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 6.7e-101 372.1 823 33.9
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 8.8e-101 371.7 820 34.1
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 1.1e-100 371.3 826 34.6
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 1.1e-100 371.3 817 35.0
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 1.5e-100 370.9 818 35.0
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 2.5e-100 370.2 824 34.5
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 3.3e-100 369.8 825 35.4
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 4.3e-100 369.4 821 34.2
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 5.7e-100 369.0 824 34.7
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 9.7e-100 368.2 827 35.2
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 2.8e-99 366.7 827 34.8
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 1.8e-98 364.0 826 34.6
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 2.4e-98 363.6 816 34.6
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 3.1e-98 363.2 818 34.4
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 4.1e-98 362.8 832 33.4
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 5.3e-98 362.5 819 33.9
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 1.2e-97 361.3 751 36.0
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 1.2e-97 361.3 749 36.7
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 1.2e-97 361.3 824 34.0
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 2.6e-97 360.1 818 34.5
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 5.9e-97 359.0 828 34.3
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 1.3e-96 357.8 828 34.3
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 2.2e-96 357.1 750 36.1
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 2.9e-96 356.7 822 33.5
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 3.8e-96 356.3 745 36.0
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 5.0e-96 355.9 801 34.3
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 1.1e-95 354.8 828 34.7
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 1.1e-95 354.8 573 40.3
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 2.5e-95 353.6 842 32.8
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 5.5e-95 352.4 821 34.0
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 9.4e-95 351.7 748 35.0
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 9.4e-95 351.7 749 35.6
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 1.4e-93 347.8 818 33.7
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 3.0e-93 346.7 735 35.9
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 1.3e-91 341.3 824 33.6
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 4.8e-91 339.3 735 34.6
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 1.1e-90 338.2 736 34.6
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 1.4e-90 337.8 750 34.5
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 2.4e-90 337.0 735 34.6
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 2.4e-90 337.0 884 32.8
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 3.1e-90 336.7 752 34.7
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 4.1e-90 336.3 739 34.6
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 5.3e-90 335.9 748 34.5
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 9.1e-90 335.1 746 35.4
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 1.5e-89 334.3 739 34.6
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 2.0e-89 334.0 740 34.6
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 2.6e-89 333.6 735 34.4
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.9e-88 330.1 414 46.4
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 6.5e-88 328.9 752 34.6
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 3.2e-87 326.6 754 33.4
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 5.5e-87 325.9 739 34.5
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 1.6e-86 324.3 745 34.4
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 3.6e-86 323.2 758 33.2
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.0e-85 321.6 741 33.2
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.1e-84 318.2 338 53.0
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 2.0e-84 317.4 743 33.2
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 3.3e-84 316.6 420 44.8
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 9.7e-84 315.1 311 54.7
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 1.4e-82 311.2 824 31.3
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 2.4e-82 310.5 836 30.4
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 1.6e-81 307.8 818 31.8
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 2.6e-81 307.0 817 31.9
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 2.6e-81 307.0 704 35.7
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 7.7e-81 305.4 704 34.8
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 9.1e-74 282.0 399 42.6
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 7.2e-71 272.3 639 35.1
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 3.8e-64 250.0 612 35.5
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 1.0e-56 225.3 175 64.0
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 2.1e-54 217.6 319 39.2
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 2.8e-54 217.2 384 39.8
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 4.7e-54 216.5 386 35.5
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 4.4e-52 209.9 627 32.5
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 6.0e-49 199.5 732 27.0
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.5e-47 194.1 201 48.3
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 4.7e-46 189.9 196 53.1
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.6e-25 121.7 107 59.8
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 1.0e-24 119.0 169 42.0
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 1.7e-24 118.2 97 62.9
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 3.0e-24 117.5 268 29.9
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 5.1e-24 116.7 90 64.4
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.6e-23 113.2 82 65.9
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 6.9e-21 106.3 59 69.5
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 2.2e-19 101.3 330 29.7
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.9e-19 100.9 120 47.5
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 3.8e-19 100.5 133 41.4
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 3.8e-19 100.5 133 41.4
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.1e-18 99.0 100 53.0
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 2.3e-16 91.3 97 50.5
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 8.7e-16 89.4 61 72.1
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 1.6e-14 85.1 284 24.6
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.4e-13 81.3 69 58.0
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 1.2e-12 79.0 73 53.4
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 7.6e-12 76.3 68 54.4
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 2.2e-11 74.7 105 45.7
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.4e-10 71.2 40 72.5
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 4.2e-10 70.5 145 32.4
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 4.2e-10 70.5 97 39.2
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 7.1e-10 69.7 99 38.4
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.6e-09 68.6 110 41.8
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.0e-08 65.9 106 35.8
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 3.9e-08 63.9 209 29.7
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 6.7e-08 63.2 59 54.2
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 8.1e-06 56.2 62 46.8


User provided reference genes

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