Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 1.4e-84 316.2 156 100.0
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 1.7e-66 256.1 156 82.1
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 9.3e-65 250.4 157 80.3
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 2.1e-64 249.2 157 79.6
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 2.7e-64 248.8 157 79.0
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 5.6e-46 188.0 157 59.9
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 7.4e-46 187.6 157 58.6
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 4.0e-44 181.8 155 57.4
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 9.0e-44 180.6 155 56.8
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 4.5e-43 178.3 155 56.1
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 1.9e-41 172.9 156 55.1
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 4.2e-41 171.8 165 52.7
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 5.5e-41 171.4 157 55.4
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 1.6e-40 169.9 159 52.8
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 1.6e-40 169.9 159 52.8
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 2.7e-40 169.1 163 56.4
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 2.7e-40 169.1 160 50.6
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 2.7e-40 169.1 164 54.3
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 3.5e-40 168.7 156 56.4
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 6.0e-40 167.9 162 55.6
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.0e-39 167.2 155 54.2
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 1.3e-39 166.8 159 54.7
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 2.3e-39 166.0 161 54.0
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 3.0e-39 165.6 165 51.5
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 3.9e-39 165.2 156 51.9
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 3.9e-39 165.2 171 51.5
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 5.1e-39 164.9 152 53.9
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 6.7e-39 164.5 168 51.2
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.9e-38 162.9 159 53.5
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 7.4e-38 161.0 166 50.6
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 1.6e-37 159.8 161 54.7
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 3.7e-37 158.7 166 51.2
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 1.4e-36 156.8 151 52.3
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.4e-36 156.0 160 53.1
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 3.1e-36 155.6 159 50.3
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 6.9e-36 154.5 153 47.7
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 6.9e-36 154.5 159 49.1
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.2e-35 153.7 160 47.5
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.5e-35 153.3 152 48.0
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 2.0e-35 152.9 159 50.9
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 2.0e-35 152.9 159 50.9
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.0e-35 152.9 159 50.9
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.0e-35 152.9 161 52.2
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 2.6e-35 152.5 163 51.5
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 3.4e-35 152.1 155 51.0
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 4.5e-35 151.8 157 51.0
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 4.5e-35 151.8 162 50.6
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.5e-35 151.8 153 48.4
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 4.5e-35 151.8 160 50.0
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 5.9e-35 151.4 157 51.6
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 7.7e-35 151.0 160 51.2
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 7.7e-35 151.0 152 52.0
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 7.7e-35 151.0 155 49.7
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 1.0e-34 150.6 162 50.0
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 1.3e-34 150.2 162 50.0
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.3e-34 150.2 156 50.6
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 1.7e-34 149.8 168 51.8
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 2.2e-34 149.4 160 46.9
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 2.9e-34 149.1 197 44.7
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.8e-34 148.7 160 50.0
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 3.8e-34 148.7 162 49.4
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 3.8e-34 148.7 159 49.7
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 3.8e-34 148.7 162 50.0
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.8e-34 148.7 159 50.9
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 8.5e-34 147.5 160 48.8
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.1e-33 147.1 168 48.8
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.1e-33 147.1 160 45.6
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 1.9e-33 146.4 162 48.8
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.5e-33 146.0 153 47.1
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 4.2e-33 145.2 158 48.7
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 5.5e-33 144.8 158 49.4
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 7.2e-33 144.4 168 48.8
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 7.2e-33 144.4 158 48.1
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 7.2e-33 144.4 157 49.0
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 9.4e-33 144.1 164 50.0
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 1.6e-32 143.3 158 48.1
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 2.1e-32 142.9 154 51.9
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 2.1e-32 142.9 153 47.1
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.7e-32 142.5 165 48.5
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 7.9e-32 141.0 161 47.8
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 7.9e-32 141.0 157 49.7
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 1.4e-31 140.2 165 46.7
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 1.8e-31 139.8 169 49.1
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 3.9e-31 138.7 152 47.4
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.1e-30 137.1 152 46.7
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 2.0e-30 136.3 154 48.1
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 2.5e-30 136.0 158 48.7
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 3.3e-30 135.6 156 46.2
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 9.7e-30 134.0 157 45.9
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 1.3e-29 133.7 158 43.7
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 1.3e-29 133.7 220 37.3
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.7e-29 133.3 157 47.8
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 2.2e-29 132.9 137 50.4
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 2.8e-29 132.5 168 43.5
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 8.2e-29 131.0 170 47.1
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 8.2e-29 131.0 198 38.9
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 8.2e-29 131.0 151 47.0
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.1e-28 130.6 161 46.6
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 3.1e-28 129.0 152 42.8
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 3.4e-27 125.6 166 44.6
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 3.4e-27 125.6 111 54.1
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 7.7e-27 124.4 268 32.5
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 1.3e-26 123.6 150 48.0
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 1.7e-26 123.2 240 33.3
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 3.8e-26 122.1 157 43.3
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 3.8e-26 122.1 157 43.3
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 8.5e-26 120.9 156 46.8
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 1.4e-25 120.2 193 41.5
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 2.5e-25 119.4 170 42.4
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 5.5e-25 118.2 160 45.0
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 7.2e-25 117.9 194 40.7
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 1.2e-24 117.1 156 45.5
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 1.2e-24 117.1 216 35.6
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 3.6e-24 115.5 167 42.5
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 1.0e-23 114.0 158 41.8
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 1.0e-23 114.0 162 40.7
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 1.8e-23 113.2 156 45.5
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 3.9e-23 112.1 156 45.5
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 3.9e-23 112.1 167 40.1
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 3.9e-23 112.1 170 37.6
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.6e-22 109.4 156 44.2
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 3.3e-22 109.0 159 42.8
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 4.4e-22 108.6 156 42.3
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 5.7e-22 108.2 157 43.3
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 5.7e-22 108.2 156 44.2
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 9.7e-22 107.5 144 41.7
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 1.7e-21 106.7 155 43.2
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 1.7e-21 106.7 155 43.2
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 6.3e-21 104.8 148 46.6
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.1e-20 104.0 175 37.1
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.4e-20 103.6 158 41.1
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 3.1e-20 102.4 150 46.7
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 3.1e-20 102.4 153 45.8
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 4.1e-20 102.1 153 43.8
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 1.2e-19 100.5 81 53.1
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 1.5e-19 100.1 146 43.8
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 2.0e-19 99.8 153 44.4
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 2.0e-19 99.8 153 44.4
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 2.0e-19 99.8 160 36.2
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.4e-17 93.6 75 49.3
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 2.5e-17 92.8 73 60.3
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 2.5e-17 92.8 158 38.0
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 3.2e-17 92.4 118 47.5
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.6e-16 90.1 82 57.3
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 6.1e-16 88.2 77 46.8
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 1.0e-15 87.4 147 37.4
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 4.4e-14 82.0 88 53.4
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 1.8e-12 76.6 78 44.9
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 3.1e-12 75.9 108 47.2
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 4.1e-12 75.5 80 51.2
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.3e-10 70.5 74 50.0
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 2.2e-10 69.7 142 35.2
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 3.2e-09 65.9 44 61.4
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 5.5e-09 65.1 89 42.7
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 1.2e-08 63.9 77 36.4
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 1.6e-08 63.5 106 34.0
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 3.6e-08 62.4 87 46.0
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 4.4e-06 55.5 88 42.0


User provided reference genes

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